 Stephen Ficklin
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87336132de
Added publication import prior to publication content type creation
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9 years ago |
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Stephen Ficklin
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664957bd0e
Fixed bug in GFF loader when no phase is provided
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9 years ago |
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Stephen Ficklin
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3b8c1d6b63
Fixed bug with cvtermynonym being wiped out after OBO loading in Chado prepare step
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9 years ago |
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Stephen Ficklin
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c475797679
Fixed bug in chado_set_active that was cuasing the search path to not get reset
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9 years ago |
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Stephen Ficklin
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27de91456f
Fix to OBO loading on Chado setup
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9 years ago |
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Stephen Ficklin
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53b89155aa
Merge branch '7.x-2.x-ds' of github.com:tripal/tripal into 7.x-2.x-ds
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9 years ago |
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Stephen Ficklin
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c8b40b4f84
Fixed bug with preparing Chado multiple times. Fixed bug with setting the field term name
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9 years ago |
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Stephen Ficklin
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662dce0cd9
minor bug fixes
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9 years ago |
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Stephen Ficklin
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014b28ae8a
Fixed problems with upgrade from T2 to T3
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9 years ago |
 Chun-Huai Cheng
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9b94bb5089
changed the dependency so that tripal_chado_views depends on tripal_chado. and Removed a callback to an undefined function
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9 years ago |
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Stephen Ficklin
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298111586d
Added Tripal Views to Tripal v3 (non legacy) and renamed Tripal Chado Views. Fixed several bugs, removed unneeded files
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9 years ago |
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Stephen Ficklin
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fe0d5b9b97
Added a new field for the content type if it's not used to identify the content. And fixed a few bugs
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9 years ago |
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Stephen Ficklin
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0e3a2d81aa
Worked through several warnings/errors
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9 years ago |
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Stephen Ficklin
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a584591704
Added Map content type
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9 years ago |
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Stephen Ficklin
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de402b67fd
Added new chado_bundle table to link a bundle directly to a chado table. Previously it was mapped via the chado_cvterm_mapping table which mapped cvterms but wasn't exact enough for bundles. Also improved the content creation form to allow for more customization for how bundles are mapped to Chado
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9 years ago |
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Stephen Ficklin
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2ad2077658
Working to fix mapping of bundles to Chado tables
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9 years ago |
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Stephen Ficklin
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d41dbf1ca8
Added new widget, formater and instance classes
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9 years ago |
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Stephen Ficklin
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97801c5cd2
Nightly check-in
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9 years ago |
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Chun-Huai Cheng
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bbdd00ebbc
when a new tripal content type is created. it'll insert, or update if not exsit, a new tripal_cvterm_mapping record. Added local:biomaterial and initial population of tripal_cvterm_mapping to the prepare chado function.
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10 years ago |
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Stephen Ficklin
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2efdb88c48
Updated taxrank OBO to use PURL and removed some drupal_write_record from API functions
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10 years ago |
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Stephen Ficklin
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ecafddf634
Fixed issue with RO OBO
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10 years ago |
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Stephen Ficklin
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c4f37fafee
Working on Views integration of fields/entities
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10 years ago |
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Stephen Ficklin
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7526753974
Working on cleanup of semantic web term assignments for web services
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10 years ago |
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Stephen Ficklin
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76681a2520
Reorganized the TripalField class and removed the attach_info() function. Broke out into two new functions: create_info and create_instance_info. This is better as it doesn't try to lump creating of a field and creating of an instance into one function and it supports all of thesettings for both operations
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10 years ago |
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Stephen Ficklin
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ee2027949d
Added new files for organization of semantic web support
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10 years ago |
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Stephen Ficklin
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5104bf6ce0
moving control of semantic web settings out of field classes
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10 years ago |
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Stephen Ficklin
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662962e541
Created a chado_semweb table for storing mapping of terms to Chado table columns.
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10 years ago |
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Stephen Ficklin
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15959fd25f
Fixed lots of bugs in the fields
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10 years ago |
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Stephen Ficklin
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da55d9884c
Updated Chado setup script to not reload ontologies if they are already loaded
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10 years ago |
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Stephen Ficklin
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04e587b9d6
Fixed issues with field renaming
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10 years ago |
