 Stephen Ficklin
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d14083521c
minor updates
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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935339fe50
Uncommented FASTA loading
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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f48925d9ff
Improved memory performance, now supports updates to existing records
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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7ddece2def
Now supporting the organism attribute
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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70ca9bb46e
periodic checkin
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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2c9f613b93
Now supporting Ontology_term
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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ad24a2ad57
Periodic checkin. Fixed quite a few issues and simplified some code
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%!s(int64=4) %!d(string=hai) anos |
 Peter Richter
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87b3e15dbf
Add loadFastas functionality in GFF3Importer
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%!s(int64=4) %!d(string=hai) anos |
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Peter Richter
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0f922ac4ff
Update GFF3Importer - Load Derives_froms
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%!s(int64=4) %!d(string=hai) anos |
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Peter Richter
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e8548ad31a
Uncomment actual insertion of FeatureLocs batch
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%!s(int64=4) %!d(string=hai) anos |
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Peter Richter
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7ef8a2b7e6
Get sequence cv from $this->feature_cv
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%!s(int64=4) %!d(string=hai) anos |
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Peter Richter
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c599975d97
Use corrected fmax
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%!s(int64=4) %!d(string=hai) anos |
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Peter Richter
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59154d4900
Fix assignFeatureIDs
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%!s(int64=4) %!d(string=hai) anos |
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Peter Richter
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fe28ce4bf7
Update GFF3Importer - Load Dbxrefs
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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7f25c0f0dc
Updates to the GFF3 loader
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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4445b1c165
Fixed bug in new GFF3 loader with landmark creation
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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6c90a75a49
new GFF3 loader now supports aliases
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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d75a16a2d3
new GFF3 loader now supports featureprop and featureloc
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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2cd2a5e14e
Rewrite of GFF3 loader working with base features
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%!s(int64=4) %!d(string=hai) anos |
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Stephen Ficklin
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c040951961
Testing updates to loader using ChaodRecord
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%!s(int64=4) %!d(string=hai) anos |
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Peter Richter
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6d86c97c49
Skip validation for inserts into chado tables
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%!s(int64=5) %!d(string=hai) anos |
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Peter Richter
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c6bdf738b3
Minor fixes in GFF3Importer
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%!s(int64=5) %!d(string=hai) anos |
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Peter Richter
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a77aef355a
Remove "use_transaction" option from GFF Importer
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%!s(int64=5) %!d(string=hai) anos |
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Peter Richter
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0d9f7bb97d
Use cvterm lookup table in helper methods
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%!s(int64=5) %!d(string=hai) anos |
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Stephen Ficklin
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74b9840490
Fixed loadOntology function in the GFF3 importer to not return if it hits a failed term, but to continue. I also fixed where there were missing try catch blocks in some of the update functions and fixed some commenting
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%!s(int64=6) %!d(string=hai) anos |
 bradfordcondon
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5a8103068a
run phpstorm base style formatter
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%!s(int64=6) %!d(string=hai) anos |
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Bradford Condon
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a959af7263
fix bug loading taxonomy importer
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%!s(int64=6) %!d(string=hai) anos |
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Bradford Condon
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e6119f0ff4
change wording anddefaults of variable
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%!s(int64=6) %!d(string=hai) anos |
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Bradford Condon
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b521059ebc
add checkbox for proteins to be created and simple test for successful GFF run and GFF with without protein imported
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%!s(int64=6) %!d(string=hai) anos |
 Lacey-Anne Sanderson
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907aba4d19
Merge branch '7.x-3.x' into 7.x-3.x-small_fixes
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%!s(int64=7) %!d(string=hai) anos |
