 Stephen Ficklin
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b8ccf71124
fixed stdClass problem
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vor 13 Jahren |
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spficklin
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af2ff151e6
Moved most extensions out. Moved base modules out of 'base' directory
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vor 13 Jahren |
 alexgl
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95aafcbd13
moving core modules into base
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vor 13 Jahren |
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spficklin
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fb76301d42
Fixed hook_access for all modules. This change supports use of other access permission modules, such as "node privacy by role"
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vor 13 Jahren |
 ccheng
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9e1584f598
Update permission checks
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vor 13 Jahren |
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spficklin
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e51634c8f3
Fixed permissoins problem for compatability with the node_privacy_by_role module
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vor 13 Jahren |
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ccheng
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4691cb02cf
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vor 13 Jahren |
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ccheng
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5305a34059
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vor 14 Jahren |
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spficklin
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7ced61cd61
Updated themeing for analyeses
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vor 14 Jahren |
 laceysanderson
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ade56a6971
Tripal: Removed Old Bulk Loader (Stephen) from core module
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vor 14 Jahren |
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spficklin
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051e7bd128
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vor 14 Jahren |
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spficklin
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0dd8d23333
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vor 14 Jahren |
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spficklin
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2b23f6c3e3
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vor 14 Jahren |
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spficklin
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5e0ef6ceff
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vor 14 Jahren |
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spficklin
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47dcfaa04c
Bug fixes for various modules and themes
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vor 14 Jahren |
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spficklin
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5ac6843b37
Fixed bugs and some themeing, and added support for parsing query matches in the blast analysis.
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vor 14 Jahren |
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ccheng
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318feef549
fix a bug that analysis_type wasn't picked up correctly when syncing.
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vor 14 Jahren |
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spficklin
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05d50175b0
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vor 14 Jahren |
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laceysanderson
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0f66f0150d
Added documentation to tripal_core, tripal_analysis, tripal_contact, tripal_stock for the new Doxygen API Site
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vor 14 Jahren |
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spficklin
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c616bca1ea
Add analysis requirement to GFF loader
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vor 14 Jahren |
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laceysanderson
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a0a61c372e
Made administration paths consistent and added module descriptions/help to new tripal admins for all modules except feature
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vor 14 Jahren |
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laceysanderson
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0df9939cce
Updated tripal API to use hooks for table description and retrieve only the table description needed by calling module_invoke_all. Also added foreign key descriptions to tripal_stock.api.inc:all, tripal_cv.api.inc:cvterm, tripal_db.api.inc:dbxref, tripal_analysis.api.inc:all, tripal_feature.api.inc:feature, tripal_organism.api.inc:all, tripal_contact.api.inc:all
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vor 14 Jahren |
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laceysanderson
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3cfd7ba884
Added Views Integration for tripal_analysis
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vor 14 Jahren |
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spficklin
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3ab974ee52
Added a new tripal_set_active_db function to replace Drupal's set_active_db function. This function allows Tripal to use a chado database in an external location or a chado database within another schema within the Drupal database. This keeps backwards compatibility with older versions of Tripal.
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vor 14 Jahren |
 mestato
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832463e97e
The syncing method now tries to figure out what type of analysis is being synchronized by checking the cvterm "analysis_type". This cvterm should be added to each analysis by the individual analysis modules or the user if the upload is directly into chado. The value for this cvterm should reflect the name of the module, "tripal_analysis_unigene", "tripal_analysis_blast", etc.
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vor 14 Jahren |
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mestato
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6729e33bcd
Added missing } on line 469.
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vor 14 Jahren |
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mestato
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61a9834df0
Add abililty for analysis module to detect a unigene-type analysis. Previously made unigene type analyses into generic type analyses.
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vor 14 Jahren |
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mestato
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442a75c16a
Fixed typo where interval was missing dollar sign.
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vor 14 Jahren |
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mestato
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4e3a64a161
Complete revision fo the cleanup method. Still deletes any orphans between node and chado_analysis in drupal but also checks for orphans without records in chado.
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vor 14 Jahren |
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mestato
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1b4bb14abc
Fixed error Parameter 1 to theme_tripal_analysis_analysis_table() expected to be a reference, value given in /local/sites/drupal/sites/dev.citrusgenomedb.org/modules/devel_themer/devel_themer.module on line 418. Also changed tripal_analysis_analysis_table to tripal_analysis_analysis_page to be more clear.
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vor 14 Jahren |
