 Risharde Ramnath
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d25737f6e4
GFF loader modification to throw error if strand character is invalid. Added unit test with an invalid strand gff to confirm it works.
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4 роки тому |
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Risharde Ramnath
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ea8b4a0b58
GFF fix for strands that are specified as question marks + finish php unit test for strands
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4 роки тому |
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Risharde Ramnath
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da939901ea
Fixed ID regular expression check in GFF loader, added new test for invalid start end values and corresponding test gff file
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4 роки тому |
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Risharde Ramnath
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49651d6c8a
Better ID validation check within the GFF3 loader
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4 роки тому |
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Risharde Ramnath
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fefe37536c
Minor fix regarding whitespace detection in GFF3 importer ID validation
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4 роки тому |
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Risharde Ramnath
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5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
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4 роки тому |
 Stephen Ficklin
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8b0cfedbe4
Added check for Gap in the GFF
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4 роки тому |
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Risharde Ramnath
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bde6690233
Bug fix that makes GFFImporter caching of features work correctly
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4 роки тому |
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Stephen Ficklin
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4ef5653ee0
Fixed caching bug and cleaned up memory leaks
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4 роки тому |
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Stephen Ficklin
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0ab2db8eb1
Now FASTA sequences are being added... all done except testing!
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4 роки тому |
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Stephen Ficklin
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2a7510c736
Now supports creation of proteins and tarets
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4 роки тому |
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Stephen Ficklin
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dbedaf88b0
GFF3 loader: Added file caching to reduce memory requirements. Added insert to analyisfeature table
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4 роки тому |
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Stephen Ficklin
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f2bd2bb030
Fixed bugs in GFF loader when landmarks are present and with finding feature property CV terms
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4 роки тому |
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Stephen Ficklin
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d14083521c
minor updates
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4 роки тому |
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Stephen Ficklin
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935339fe50
Uncommented FASTA loading
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4 роки тому |
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Stephen Ficklin
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f48925d9ff
Improved memory performance, now supports updates to existing records
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4 роки тому |
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Stephen Ficklin
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7ddece2def
Now supporting the organism attribute
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4 роки тому |
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Stephen Ficklin
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70ca9bb46e
periodic checkin
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4 роки тому |
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Stephen Ficklin
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2c9f613b93
Now supporting Ontology_term
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4 роки тому |
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Stephen Ficklin
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ad24a2ad57
Periodic checkin. Fixed quite a few issues and simplified some code
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4 роки тому |
 Peter Richter
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87b3e15dbf
Add loadFastas functionality in GFF3Importer
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4 роки тому |
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Peter Richter
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0f922ac4ff
Update GFF3Importer - Load Derives_froms
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4 роки тому |
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Peter Richter
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e8548ad31a
Uncomment actual insertion of FeatureLocs batch
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4 роки тому |
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Peter Richter
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7ef8a2b7e6
Get sequence cv from $this->feature_cv
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4 роки тому |
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Peter Richter
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c599975d97
Use corrected fmax
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4 роки тому |
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Peter Richter
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59154d4900
Fix assignFeatureIDs
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4 роки тому |
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Peter Richter
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fe28ce4bf7
Update GFF3Importer - Load Dbxrefs
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4 роки тому |
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Stephen Ficklin
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7f25c0f0dc
Updates to the GFF3 loader
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4 роки тому |
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Stephen Ficklin
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4445b1c165
Fixed bug in new GFF3 loader with landmark creation
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4 роки тому |
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Stephen Ficklin
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6c90a75a49
new GFF3 loader now supports aliases
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4 роки тому |
