 Risharde Ramnath
|
d25737f6e4
GFF loader modification to throw error if strand character is invalid. Added unit test with an invalid strand gff to confirm it works.
|
4 年之前 |
|
Risharde Ramnath
|
ea8b4a0b58
GFF fix for strands that are specified as question marks + finish php unit test for strands
|
4 年之前 |
|
Risharde Ramnath
|
a396ae070a
Added new test to check on score values - integer, double and negative double
|
4 年之前 |
|
Risharde Ramnath
|
da939901ea
Fixed ID regular expression check in GFF loader, added new test for invalid start end values and corresponding test gff file
|
4 年之前 |
|
Risharde Ramnath
|
49651d6c8a
Better ID validation check within the GFF3 loader
|
4 年之前 |
|
Risharde Ramnath
|
fefe37536c
Minor fix regarding whitespace detection in GFF3 importer ID validation
|
4 年之前 |
|
Risharde Ramnath
|
5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
|
4 年之前 |
|
Risharde Ramnath
|
baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
|
4 年之前 |
|
Risharde Ramnath
|
b2c0291cb4
Fixed testGFFImporterAttributeFastas() test, assertion values were based on the wrong file. Updated with the correct string lengths and md5 values
|
4 年之前 |
|
Risharde Ramnath
|
5f4d0f8b6a
Removed additional gap from small_gene.gff since only one gap variable is allowed per gene. Fixed the test to only look for one gap - test public function testGFFImporterAttributeProperty() {completes correctly
|
4 年之前 |
 Stephen Ficklin
|
8b0cfedbe4
Added check for Gap in the GFF
|
4 年之前 |
|
Stephen Ficklin
|
d25ed35546
Merge pull request #1103 from risharde/1040-tv3-gff3_performance
|
4 年之前 |
|
Risharde Ramnath
|
bde6690233
Bug fix that makes GFFImporter caching of features work correctly
|
4 年之前 |
|
Stephen Ficklin
|
dfdd0dcb63
Updated documentation
|
4 年之前 |
|
Stephen Ficklin
|
4ef5653ee0
Fixed caching bug and cleaned up memory leaks
|
4 年之前 |
|
Stephen Ficklin
|
0ab2db8eb1
Now FASTA sequences are being added... all done except testing!
|
4 年之前 |
|
Stephen Ficklin
|
2a7510c736
Now supports creation of proteins and tarets
|
4 年之前 |
|
Stephen Ficklin
|
dbedaf88b0
GFF3 loader: Added file caching to reduce memory requirements. Added insert to analyisfeature table
|
5 年之前 |
|
Stephen Ficklin
|
f2bd2bb030
Fixed bugs in GFF loader when landmarks are present and with finding feature property CV terms
|
5 年之前 |
|
Stephen Ficklin
|
d14083521c
minor updates
|
5 年之前 |
|
Stephen Ficklin
|
935339fe50
Uncommented FASTA loading
|
5 年之前 |
|
Stephen Ficklin
|
f48925d9ff
Improved memory performance, now supports updates to existing records
|
5 年之前 |
|
Stephen Ficklin
|
7ddece2def
Now supporting the organism attribute
|
5 年之前 |
|
Stephen Ficklin
|
70ca9bb46e
periodic checkin
|
5 年之前 |
|
Stephen Ficklin
|
2c9f613b93
Now supporting Ontology_term
|
5 年之前 |
|
Stephen Ficklin
|
ad24a2ad57
Periodic checkin. Fixed quite a few issues and simplified some code
|
5 年之前 |
|
Stephen Ficklin
|
9807839cf5
Merge branch '1040-tv3-gff3_performance' of github.com:tripal/tripal into 1040-tv3-gff3_performance
|
5 年之前 |
|
Stephen Ficklin
|
c8f1ead03b
Merge branch '7.x-3.x' into 1040-tv3-gff3_performance
|
5 年之前 |
|
Stephen Ficklin
|
cec41a61ec
Merge pull request #1076 from par12005/1040-tv3-gff3_performance
|
5 年之前 |
|
Stephen Ficklin
|
04dee243fb
Merge pull request #1085 from dsenalik/tripaltypos20200912
|
5 年之前 |
