 Stephen Ficklin
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34f161ac8e
Fixes to GFF3 loader
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3 years ago |
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Stephen Ficklin
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c17ededb49
Merge pull request #1137 from risharde/1040-tv3-gff3_performance
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4 years ago |
 Risharde Ramnath
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70858e9b53
Remove unnecessary urldecoding for parent attribute
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4 years ago |
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Risharde Ramnath
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9035086bfe
Fixed tests that were affected by tag and value checks that have now been removed
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4 years ago |
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Risharde Ramnath
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27de73ff9b
Remove validation for tag and tag values. Remove additional output code for logMessage.
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4 years ago |
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Risharde Ramnath
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dcfd25d186
Modified TripalImporter logmessage function to output log messages to terminal / command line when code is executed on command line
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4 years ago |
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Risharde Ramnath
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5da8b12b88
Unit test - alias/synonym attribute verification
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4 years ago |
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Risharde Ramnath
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cbf205fced
Unit test - parent verification
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4 years ago |
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Risharde Ramnath
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ac790a4eeb
Unit test for escaped characters with tag values
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4 years ago |
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Stephen Ficklin
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51cdd1467b
Forgot to remove a print_r statement
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4 years ago |
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Stephen Ficklin
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2253f7ee3c
Fixed both issues described in #1135. Also made a few additional fixes for issues with PHP 7.4, and adjusted the default layouts for sequences
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4 years ago |
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Risharde Ramnath
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541d67099e
Fix merge
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4 years ago |
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Stephen Ficklin
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bf8a978bb2
Fixed warning messags when submitting form and bug when adding proteins
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4 years ago |
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Risharde Ramnath
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5260a06a06
This latest commit detects a bug using the testGFFImporterEscapedTagValueWithComma unit test
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4 years ago |
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Risharde Ramnath
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085cf9eabd
Tag value unit test added
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4 years ago |
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Risharde Ramnath
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2f66751d03
2 validation checks for attribute tag name and attribute tag value plus unit test for tag name that contains a comma
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4 years ago |
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Risharde Ramnath
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bba096323a
Fixed a mix up of validation for ID which should have been for seqid. Removed validation for ID. Altered tests to properly work. Added new test for invalid character in seqid/landmark id
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4 years ago |
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Stephen Ficklin
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4b60f9b9e6
Merge pull request #1134 from risharde/1040-tv3-gff3_performance
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4 years ago |
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Risharde Ramnath
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9534e04478
GFF unit test data related to phase tests
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4 years ago |
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Risharde Ramnath
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5278d2a50b
Fix for GFF if phase value is invalid + unit tests for the gff phase column that checks for valid and invalid characters
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4 years ago |
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Stephen Ficklin
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dd3747cc1f
Merge branch '1040-tv3-gff3_performance' of github.com:tripal/tripal into 1040-tv3-gff3_performance
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4 years ago |
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Stephen Ficklin
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2d3d660bfd
Fixed merge conflict
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4 years ago |
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Stephen Ficklin
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842dc83253
Merge pull request #1133 from risharde/1040-tv3-gff3_performance
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4 years ago |
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Risharde Ramnath
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fa97f6af76
Remove strange empty files
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4 years ago |
 Lacey-Anne Sanderson
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48f098f843
Merge pull request #1119 from tripal/1118-tv3-ws_bugs
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4 years ago |
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Lacey-Anne Sanderson
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e2b5386bd0
Merge pull request #1117 from tripal/1116-tv3-edam_import
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4 years ago |
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Risharde Ramnath
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d25737f6e4
GFF loader modification to throw error if strand character is invalid. Added unit test with an invalid strand gff to confirm it works.
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4 years ago |
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Risharde Ramnath
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ea8b4a0b58
GFF fix for strands that are specified as question marks + finish php unit test for strands
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4 years ago |
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Stephen Ficklin
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f1cfe3aa6b
Merge branch '7.x-3.x' into 1116-tv3-edam_import
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4 years ago |
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Stephen Ficklin
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29ac9f7e95
Merge pull request #1131 from tripal/tv3-ci-docs
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4 years ago |
