 spficklin
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c0f8f4256a
Fixed jobs report so that it updates job status whenever the page is loaded. Previously it only updated job status when a job was launched
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12 gadi atpakaļ |
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spficklin
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7ee06408f0
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
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12 gadi atpakaļ |
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spficklin
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4560a2dce9
Made some additional bug fixes and improvements to the GFF loader
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12 gadi atpakaļ |
 Lacey Sanderson
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7eadda2e68
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
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12 gadi atpakaļ |
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Lacey Sanderson
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95b740ff06
Issue 1764346 #5: Added API functions to delete records and fields. On delete of either the indicies of the template are reset to ensure there is no gap. This should fix the weird behaviour.
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12 gadi atpakaļ |
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spficklin
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8924d71248
Added support to the GFF loader for specifying target species and tyeps
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12 gadi atpakaļ |
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spficklin
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8098c77257
Fixed memory leaks in OBO loader.
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12 gadi atpakaļ |
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Lacey Sanderson
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fd2555c5a3
Quick Bulk Loader Fix: Is unique now ignores if the name hasn't changed in edit record and is unique
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12 gadi atpakaļ |
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spficklin
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e332937b6a
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
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12 gadi atpakaļ |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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12 gadi atpakaļ |
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Lacey Sanderson
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72e2638b60
Issue 1764346 #1: small fix so that the edit field check works properly.
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12 gadi atpakaļ |
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Lacey Sanderson
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efc0acb2b2
Issue 1764346 #1: Added an is_unique check to the edit record to ensure that the record name remains unique
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12 gadi atpakaļ |
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Lacey Sanderson
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995e6e811c
Small fix to bulk loader to work with Tripal API -set update to return record to perserve default functionality
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12 gadi atpakaļ |
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spficklin
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31221a7dc5
One more fix to the chado_query regular expressions to handle nested select statements where the FROM doesn't have a table but a nested statement
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12 gadi atpakaļ |
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spficklin
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7a8f7da935
One more fix to the chado_query regular expressions to handle nested select statements where the FROM doesn't have a table but a nested statement
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12 gadi atpakaļ |
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spficklin
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48631d702c
Fixed a bug when registering a new analysis module. If the module already existed in the table it threw an error. Now it checks first. Also fixed bug with chado_query to not add a 'chado.' prefix in the 'substring' psql function. Also updated the tripal_core_chado_update module to return the primary key if a single record is updated and if the return_record option is given.
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12 gadi atpakaļ |
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Lacey Sanderson
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9ea011d881
Added tripal_core_chado_clear_prepared function to clear previously prepared statements. Also changed chado. prefixing in chado query to only apply if there isn't already a prefix added.
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12 gadi atpakaļ |
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spficklin
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2ba111dac2
Oops should have put the code to add the chado schema to the SQL in a differnet place in the chado_query function.
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12 gadi atpakaļ |
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spficklin
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6060c25204
Addressed issue #1787390. The chado_query function now uses regular expressions to change an SQL statement to prefix table names with the chado schema but only does so if Chado is not local
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12 gadi atpakaļ |
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spficklin
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0b674f6e64
Removed old relationship aggregator table and code. We don't use it.
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12 gadi atpakaļ |
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spficklin
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bd92f8335a
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
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12 gadi atpakaļ |
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spficklin
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403d2803cf
Fixed issue #1661530
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12 gadi atpakaļ |
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Lacey Sanderson
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538fa53d05
Merge branch '6.x-1.x' of git.drupal.org:sandbox/spficklin/1337878 into 6.x-1.x
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12 gadi atpakaļ |
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Lacey Sanderson
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f148723b13
Issue #1840808: Fixed update in bulk loader. Now it checks to see if the record is pre-existing before an update. Also fixed the tripal_core_chado_update function to return the created record w/ primary key like the insert function does.
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12 gadi atpakaļ |
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spficklin
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9bb94c3748
Fixed issue #1699022. Took out all code that tried to distinguish a revision.
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12 gadi atpakaļ |
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spficklin
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f5204888f4
Addressed issue #1850226. Added a check to makesure that if a feature was being updated through a match on the name and it had a new uniquename, that it wouldn't conflict with an existing feature of the same uniquename. Also cleaned up some of the error messages and added some more problem checking
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12 gadi atpakaļ |
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spficklin
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d702ccbc99
Bug fix with GFF loader
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12 gadi atpakaļ |
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spficklin
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7c95f3d958
Fixed Issue #1809994. The FASTA loader now correctly loads relationships and external DB referneces. Also, removed the requirement that residues have only IUPAC characters. The check incorrectly forgot protein characters, but also sometimes there may be additional characters and we shouldn't limit the field
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12 gadi atpakaļ |
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spficklin
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fe13e2e1d6
Added function to stocks admin configuration for cleaning up orphaned stocks
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12 gadi atpakaļ |
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spficklin
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ca9bbddea1
Fixed bug with ampersand in function call
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12 gadi atpakaļ |
