 Stephen Ficklin
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ea9feba75a
added missing file, fixed mistake with two form_alter hooks in pub module
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vor 11 Jahren |
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Stephen Ficklin
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8c80a17d2e
Transactions are working on GFF loader and added to OBO Loader
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vor 11 Jahren |
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Stephen Ficklin
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a77526a07e
Removed ability to preview nodes. The templates are messed up in preview and it's easier to just remove the button
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vor 11 Jahren |
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Stephen Ficklin
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ab3efa20a1
commit for pull
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vor 11 Jahren |
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Stephen Ficklin
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bee0b0728e
Working on GFF loader. Fixed bug in core with featureloc table and chado_query
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vor 11 Jahren |
 spficklin
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38e9922c11
Converted tripal_pub
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vor 11 Jahren |
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spficklin
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34bfc95115
Nightly checking
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vor 11 Jahren |
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spficklin
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d922b7a57b
Fixed minor coding review problems
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vor 11 Jahren |
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spficklin
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21b40fa629
Fixed GFF loader to give features with no ID a generic name with 1-based coordinates
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vor 11 Jahren |
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Stephen Ficklin
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086eb4b649
Fixed bug in sequence retreval API function if parent has no residues
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vor 12 Jahren |
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spficklin
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1156b83efb
Added support for 'organism=genus:speices' attribute for importing GFF files
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vor 12 Jahren |
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spficklin
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e557f16da4
Added specific handling of Patent type publications. Fixed the tpub.obo as some of the accessions were missing the colon between the DB name and number.
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vor 12 Jahren |
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spficklin
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2756a7cce1
Added brackets around all table names in SQL statements throughout all of Tripal
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vor 12 Jahren |
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spficklin
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fc8149faec
Updated the GFF loader to add a date timestamp to the uniquename if none is provided in the GFF file. This ensures that the value will always be unique. Also, updated the GFF file to use the landmark_type provided by the user to look for the landmark if one is provided. Also changed the GFF loader so that it will recognize an entry for landmark using either the uniquename or the name
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vor 12 Jahren |
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spficklin
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c423725e2a
Updated Doxygen comments
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vor 12 Jahren |
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spficklin
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cf8e652b36
Fixed GFF loader for deleting entries in a GFF file. It was broken
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vor 12 Jahren |
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spficklin
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c0f8f4256a
Fixed jobs report so that it updates job status whenever the page is loaded. Previously it only updated job status when a job was launched
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vor 12 Jahren |
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spficklin
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4560a2dce9
Made some additional bug fixes and improvements to the GFF loader
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vor 12 Jahren |
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spficklin
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8924d71248
Added support to the GFF loader for specifying target species and tyeps
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vor 12 Jahren |
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spficklin
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8098c77257
Fixed memory leaks in OBO loader.
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vor 12 Jahren |
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spficklin
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09b02611ed
Fixed memory leaks in the Tripal core API when storing the persistent connection. Alos fixed memory leaks in GFF loader and added loading of FASTA sequences embeded in the GFF file ##FASTA section
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vor 12 Jahren |
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spficklin
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d702ccbc99
Bug fix with GFF loader
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vor 12 Jahren |
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spficklin
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42fe28540f
Fixed issue #1712422. Changed all Chado querie to use chado_query() rather than db_query()
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vor 12 Jahren |
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spficklin
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969e4bbb18
Fixed bugs in GFF loader when parsing Target= attribute
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vor 12 Jahren |
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spficklin
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ad26575c11
Fixed bug when adding properties from GFF loader
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vor 12 Jahren |
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spficklin
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bcd4a7eb2a
The OBO loader had a problem where it wouldn't add synonyms. It was a bug in the code. Should be fixed
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vor 12 Jahren |
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spficklin
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cd87d5a56a
Fixed Drupal formatting standards
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vor 12 Jahren |
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spficklin
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2a743acf56
Made transactions optional in GFF loader. Changed all appropriate db_queryt to chado_query in feature module. Added a drush command to sync a single feature (useful for debugging/testing).
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vor 12 Jahren |
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spficklin
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02155ecfe5
Fixed bug in GFF loader
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vor 12 Jahren |
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spficklin
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c5da76a2b4
Fixed bug in GFF loader
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vor 12 Jahren |
