 Stephen Ficklin
|
f2e3d2fbb1
Fixed merge conflict with 7.x-3.x
|
4 gadi atpakaļ |
 Lacey Sanderson
|
d5fe19a22a
Attempt to fix Issue #681.
|
5 gadi atpakaļ |
|
Stephen Ficklin
|
dcdf5bafe0
Fix for issue #117
|
5 gadi atpakaļ |
 bradfordcondon
|
5a8103068a
run phpstorm base style formatter
|
5 gadi atpakaļ |
|
bradfordcondon
|
770a7c33a5
update the NCBI taxon db to not go to purl but to NCBI
|
6 gadi atpakaļ |
 Anthony Bretaudeau
|
7054d85713
fix a few warnings (and remove many trailing white spaces)
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
d20f4065e2
Merge branch '7.x-3.x' into 525-tv3-obo_speed_colon
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
adc5289fc4
Fixed bug with NCIT db creation
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
823bdbbd57
Fixed a few more bugs
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
c8dd07b801
OBO Loader all functions complete. Restored chado_insert_cvterm
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
dbe2f223a2
periodic checkin
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
4e6cc401be
Periodic check-in
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
ccd6b1410d
Removed local__gbrowse_image field. it will go to the trpfancy_fields module
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
a27b2f798a
While trying to fix this the wrong CDS problem I needed the so__cds field to work (which it now is with this commit). I also added a jbrowse viewer so I could easily see how the genes are supposed to look
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
5d06f20ac2
Fixes to these fields: sep__protocol, schema__additional_type, local__contact.
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
61495b0eb7
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
de91c6400d
This commit adds support for the protocol, assay and arraydesign tables as well as adds many new terms for chado table columns that didn't have terms associated
|
6 gadi atpakaļ |
 Shawna Spoor
|
9096723c9a
found deprecated terms that needed to be swapped out
|
6 gadi atpakaļ |
|
Shawna Spoor
|
d4ccef15fc
changes to bring the tripal chado api module files into naming standards setout in ticket 330
|
6 gadi atpakaļ |
|
Stephen Ficklin
|
6689fe9155
Fixed URL for SWO vocab
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
b39dfbb6ae
Made fixes to the TPUB and TContact db and cv entries and added a sw_url to the vocab details
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
d370da91d6
WS working with HydraConsole, still need to add fields of content types
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
53937d9639
Updated web services to work with the HydraConsole
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
d9e87077f6
Added support for Phylogenetic Tree content type and visualization field
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
a366e1199b
Converted taxonomy importer to new TripalImporter class and added ability to import taxonomy IDs from NCBI
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
39c8baf932
A variety of small bug and text fixes
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
f853f19cb6
Changed Analysis content type to use operation:2945 term. issue #151
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
6b78d9da21
Added biological sample entity type
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
ccde805a45
Added necessary code to support the biomaterial table
|
7 gadi atpakaļ |
|
Stephen Ficklin
|
85d98bdce0
Added an email term for contacts
|
7 gadi atpakaļ |
