 Risharde Ramnath
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fa97f6af76
Remove strange empty files
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5 years ago |
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Risharde Ramnath
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d25737f6e4
GFF loader modification to throw error if strand character is invalid. Added unit test with an invalid strand gff to confirm it works.
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5 years ago |
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Risharde Ramnath
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ea8b4a0b58
GFF fix for strands that are specified as question marks + finish php unit test for strands
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5 years ago |
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Risharde Ramnath
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a396ae070a
Added new test to check on score values - integer, double and negative double
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5 years ago |
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Risharde Ramnath
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da939901ea
Fixed ID regular expression check in GFF loader, added new test for invalid start end values and corresponding test gff file
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5 years ago |
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Risharde Ramnath
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49651d6c8a
Better ID validation check within the GFF3 loader
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5 years ago |
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Risharde Ramnath
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fefe37536c
Minor fix regarding whitespace detection in GFF3 importer ID validation
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5 years ago |
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Risharde Ramnath
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5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
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5 years ago |
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Risharde Ramnath
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baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
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5 years ago |
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Risharde Ramnath
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b2c0291cb4
Fixed testGFFImporterAttributeFastas() test, assertion values were based on the wrong file. Updated with the correct string lengths and md5 values
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5 years ago |
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Risharde Ramnath
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5f4d0f8b6a
Removed additional gap from small_gene.gff since only one gap variable is allowed per gene. Fixed the test to only look for one gap - test public function testGFFImporterAttributeProperty() {completes correctly
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5 years ago |
 Stephen Ficklin
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8b0cfedbe4
Added check for Gap in the GFF
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5 years ago |
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Stephen Ficklin
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d25ed35546
Merge pull request #1103 from risharde/1040-tv3-gff3_performance
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5 years ago |
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Risharde Ramnath
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bde6690233
Bug fix that makes GFFImporter caching of features work correctly
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5 years ago |
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Stephen Ficklin
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dfdd0dcb63
Updated documentation
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5 years ago |
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Stephen Ficklin
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4ef5653ee0
Fixed caching bug and cleaned up memory leaks
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5 years ago |
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Stephen Ficklin
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0ab2db8eb1
Now FASTA sequences are being added... all done except testing!
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5 years ago |
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Stephen Ficklin
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2a7510c736
Now supports creation of proteins and tarets
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5 years ago |
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Stephen Ficklin
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dbedaf88b0
GFF3 loader: Added file caching to reduce memory requirements. Added insert to analyisfeature table
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5 years ago |
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Stephen Ficklin
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f2bd2bb030
Fixed bugs in GFF loader when landmarks are present and with finding feature property CV terms
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5 years ago |
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Stephen Ficklin
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d14083521c
minor updates
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5 years ago |
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Stephen Ficklin
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935339fe50
Uncommented FASTA loading
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5 years ago |
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Stephen Ficklin
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f48925d9ff
Improved memory performance, now supports updates to existing records
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5 years ago |
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Stephen Ficklin
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7ddece2def
Now supporting the organism attribute
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5 years ago |
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Stephen Ficklin
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70ca9bb46e
periodic checkin
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5 years ago |
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Stephen Ficklin
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2c9f613b93
Now supporting Ontology_term
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5 years ago |
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Stephen Ficklin
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ad24a2ad57
Periodic checkin. Fixed quite a few issues and simplified some code
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5 years ago |
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Stephen Ficklin
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9807839cf5
Merge branch '1040-tv3-gff3_performance' of github.com:tripal/tripal into 1040-tv3-gff3_performance
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5 years ago |
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Stephen Ficklin
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c8f1ead03b
Merge branch '7.x-3.x' into 1040-tv3-gff3_performance
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5 years ago |
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Stephen Ficklin
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cec41a61ec
Merge pull request #1076 from par12005/1040-tv3-gff3_performance
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5 years ago |
