array(
'name' => 'taxonomy',
),
);
$message = t('Site administrators: This page is meant to provide
a heirarchical taxonomic tree for all of the organism present
in this site. This may not be useful if you only have a few
species. If so, you can turn off this page by disabling this page on
the site\'s Navigation Menu. Otherwise, to generate the taxonomy go to this site\'s
NCBI taxonomy loader to import the taxonomy information from NCBI.
Note: If you add new species to this site, you should rerun the
NCBI taxonomy loader to update the view',
array(
'@menu' => url('admin/structure/menu/manage/navigation'),
'@taxloader' => url('admin/tripal/loaders/chado_taxonomy'
))
);
$admin_message = tripal_set_message($message, TRIPAL_INFO, array('return_html' => TRUE));
$content['admin_message'] = array(
'#type' => 'markup',
'#markup' => t('This site has not yet prepared the taxonomy for viewing.') . $admin_message,
);
$phylotree = chado_generate_var('phylotree', $values);
if ($phylotree) {
$node = new stdClass();
$node->phylotree = $phylotree;
$phylotree = chado_expand_var($phylotree,'field','phylotree.comment');
module_load_include('inc', 'tripal_chado', 'includes/tripal_chado.phylotree');
tripal_phylogeny_prepare_tree_viewer($phylotree);
if ($phylotree->type_id->name == "taxonomy" and $phylotree->has_nodes) {
$content['comment'] = array(
'#type' => 'markup',
'#markup' =>$phylotree->comment
);
$ajax_loader = url(drupal_get_path('module', 'tripal') . '/theme/images/ajax-loader.gif');
$content['phylogram'] = array(
'#type' => 'markup',
'#markup' => '
'
);
}
}
return $content;
}