name] = $view; // Admin view $view = tripal_library_admin_defaultviews_library(); $view = tripal_make_view_compatible_with_external($view); $views[$view->name] = $view; return $views; } /** * Defines the library user search default view. * * @ingroup tripal_legacy_library */ function tripal_library_defaultvalue_user_library() { // As a shortcut, currently I am copying the admin view and then tweaking it // In the future this should be replaced by a views export $view = tripal_library_admin_defaultviews_library(); // change some view admin stuff $view->name = 'tripal_library_user_library'; $view->human_name = 'Library User Search'; $view->description = 'Allows users to search library data'; $view->tag = 'tripal search'; // Change the path $view->display['page_1']->display_options['path'] = 'chado/library'; $view->display['page_1']->display_options['menu'] = [ 'type' => 'normal', 'title' => 'Libraries', 'description' => 'Biological library including BAC, cDNA, FOSMID, etc.', 'weight' => '-10', ]; unset($view->display['page_1']->display_options['tab_options']); // Change the permission $view->display['default']->display_options['access']['perm'] = 'access chado_library content'; // Remove edit/delete node unset( $view->display['default']->display_options['fields']['delete_node'], $view->display['default']->display_options['fields']['edit_node'], $view->display['default']->display_options['fields']['nothing'] ); // Remove the admin action links unset($view->display['default']->display_options['header']['action_links_area']); return $view; } /** * Default administration library view * * @ingroup tripal_legacy_library */ function tripal_library_admin_defaultviews_library() { $view = new view(); $view->name = 'tripal_library_admin_libraries'; $view->description = 'DO NOT DISABLE'; $view->tag = 'tripal admin'; $view->base_table = 'library'; $view->human_name = 'Library Admin'; $view->core = 0; $view->api_version = '3.0'; $view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */ /* Display: Defaults */ $handler = $view->new_display('default', 'Defaults', 'default'); $handler->display->display_options['title'] = 'Libraries'; $handler->display->display_options['use_more_always'] = FALSE; $handler->display->display_options['access']['type'] = 'perm'; $handler->display->display_options['access']['perm'] = 'access chado_library content'; $handler->display->display_options['cache']['type'] = 'none'; $handler->display->display_options['query']['type'] = 'views_query'; $handler->display->display_options['exposed_form']['type'] = 'input_required'; $handler->display->display_options['exposed_form']['options']['submit_button'] = 'Search'; $handler->display->display_options['exposed_form']['options']['text_input_required'] = 'Click search to see a listing of libraries that meet the filter requirements. Use the filters to restrict this set to a more reasonable number of libraries or to find a specific library.'; $handler->display->display_options['exposed_form']['options']['text_input_required_format'] = 'full_html'; $handler->display->display_options['pager']['type'] = 'full'; $handler->display->display_options['pager']['options']['items_per_page'] = '25'; $handler->display->display_options['pager']['options']['offset'] = '0'; $handler->display->display_options['pager']['options']['id'] = '0'; $handler->display->display_options['pager']['options']['quantity'] = '9'; $handler->display->display_options['style_plugin'] = 'table'; $handler->display->display_options['style_options']['grouping'] = ''; $handler->display->display_options['style_options']['columns'] = [ 'uniquename' => 'uniquename', 'name_1' => 'name_1', 'common_name' => 'common_name', 'name' => 'name', 'is_obsolete' => 'is_obsolete', ]; $handler->display->display_options['style_options']['default'] = 'uniquename'; $handler->display->display_options['style_options']['info'] = [ 'uniquename' => [ 'sortable' => 1, 'separator' => '', ], 'name_1' => [ 'sortable' => 1, 'separator' => '', ], 'common_name' => [ 'sortable' => 1, 'separator' => '', ], 'name' => [ 'sortable' => 1, 'separator' => '', ], 'is_obsolete' => [ 'sortable' => 1, 'separator' => '', ], ]; /* Header: Global: Action Links */ $handler->display->display_options['header']['action_links_area']['id'] = 'action_links_area'; $handler->display->display_options['header']['action_links_area']['table'] = 'views'; $handler->display->display_options['header']['action_links_area']['field'] = 'action_links_area'; $handler->display->display_options['header']['action_links_area']['label'] = 'Action Links'; $handler->display->display_options['header']['action_links_area']['empty'] = TRUE; $handler->display->display_options['header']['action_links_area']['link-1'] = [ 'label-1' => 'Add Library', 'path-1' => 'node/add/tripal-library', ]; $handler->display->display_options['header']['action_links_area']['link-2'] = [ 'label-2' => '', 'path-2' => '', ]; $handler->display->display_options['header']['action_links_area']['link-3'] = [ 'label-3' => '', 'path-3' => '', ]; $handler->display->display_options['header']['action_links_area']['link-4'] = [ 'label-4' => '', 'path-4' => '', ]; /* No results behavior: Global: Text area */ $handler->display->display_options['empty']['text']['id'] = 'area'; $handler->display->display_options['empty']['text']['table'] = 'views'; $handler->display->display_options['empty']['text']['field'] = 'area'; $handler->display->display_options['empty']['text']['content'] = 'No libraries match the supplied criteria.'; $handler->display->display_options['empty']['text']['format'] = '1'; /* Relationship: Library: Library => Node */ $handler->display->display_options['relationships']['library_id']['id'] = 'library_id'; $handler->display->display_options['relationships']['library_id']['table'] = 'chado_library'; $handler->display->display_options['relationships']['library_id']['field'] = 'library_id'; /* Field: Content: Nid */ $handler->display->display_options['fields']['nid']['id'] = 'nid'; $handler->display->display_options['fields']['nid']['table'] = 'node'; $handler->display->display_options['fields']['nid']['field'] = 'nid'; $handler->display->display_options['fields']['nid']['relationship'] = 'library_id'; $handler->display->display_options['fields']['nid']['exclude'] = TRUE; /* Field: Node URL */ $handler->display->display_options['fields']['nid_1']['id'] = 'nid_1'; $handler->display->display_options['fields']['nid_1']['table'] = 'node'; $handler->display->display_options['fields']['nid_1']['field'] = 'nid'; $handler->display->display_options['fields']['nid_1']['relationship'] = 'feature_id'; $handler->display->display_options['fields']['nid_1']['ui_name'] = 'Node URL'; $handler->display->display_options['fields']['nid_1']['label'] = ''; $handler->display->display_options['fields']['nid_1']['exclude'] = TRUE; $handler->display->display_options['fields']['nid_1']['alter']['alter_text'] = TRUE; $handler->display->display_options['fields']['nid_1']['alter']['text'] = 'node/[nid]'; $handler->display->display_options['fields']['nid_1']['element_label_colon'] = FALSE; /* Field: Chado Library: Uniquename */ $handler->display->display_options['fields']['uniquename']['id'] = 'uniquename'; $handler->display->display_options['fields']['uniquename']['table'] = 'library'; $handler->display->display_options['fields']['uniquename']['field'] = 'uniquename'; $handler->display->display_options['fields']['uniquename']['label'] = 'Unique Name'; $handler->display->display_options['fields']['uniquename']['alter']['make_link'] = TRUE; $handler->display->display_options['fields']['uniquename']['alter']['path'] = '[nid_1]'; /* Field: Chado Library: Name */ $handler->display->display_options['fields']['name_1']['id'] = 'name_1'; $handler->display->display_options['fields']['name_1']['table'] = 'library'; $handler->display->display_options['fields']['name_1']['field'] = 'name'; $handler->display->display_options['fields']['name']['alter']['make_link'] = TRUE; $handler->display->display_options['fields']['name']['alter']['path'] = '[nid_1]'; /* Field: Chado Organism: Common Name */ $handler->display->display_options['fields']['common_name']['id'] = 'common_name'; $handler->display->display_options['fields']['common_name']['table'] = 'organism'; $handler->display->display_options['fields']['common_name']['field'] = 'common_name'; $handler->display->display_options['fields']['common_name']['label'] = 'Organism'; /* Field: Chado Cvterm: Name */ $handler->display->display_options['fields']['name']['id'] = 'name'; $handler->display->display_options['fields']['name']['table'] = 'cvterm'; $handler->display->display_options['fields']['name']['field'] = 'name'; $handler->display->display_options['fields']['name']['label'] = 'Type'; /* Field: Chado Library: Is Obsolete */ $handler->display->display_options['fields']['is_obsolete']['id'] = 'is_obsolete'; $handler->display->display_options['fields']['is_obsolete']['table'] = 'library'; $handler->display->display_options['fields']['is_obsolete']['field'] = 'is_obsolete'; $handler->display->display_options['fields']['is_obsolete']['label'] = 'Obsolete?'; $handler->display->display_options['fields']['is_obsolete']['alter']['alter_text'] = TRUE; $handler->display->display_options['fields']['is_obsolete']['alter']['text'] = 'Yes'; $handler->display->display_options['fields']['is_obsolete']['empty'] = 'No'; $handler->display->display_options['fields']['is_obsolete']['empty_zero'] = TRUE; $handler->display->display_options['fields']['is_obsolete']['separator'] = ''; /* Field: Content: Delete link */ $handler->display->display_options['fields']['delete_node']['id'] = 'delete_node'; $handler->display->display_options['fields']['delete_node']['table'] = 'views_entity_node'; $handler->display->display_options['fields']['delete_node']['field'] = 'delete_node'; $handler->display->display_options['fields']['delete_node']['relationship'] = 'library_id'; $handler->display->display_options['fields']['delete_node']['exclude'] = TRUE; /* Field: Content: Edit link */ $handler->display->display_options['fields']['edit_node']['id'] = 'edit_node'; $handler->display->display_options['fields']['edit_node']['table'] = 'views_entity_node'; $handler->display->display_options['fields']['edit_node']['field'] = 'edit_node'; $handler->display->display_options['fields']['edit_node']['relationship'] = 'library_id'; $handler->display->display_options['fields']['edit_node']['exclude'] = TRUE; /* Field: Global: Custom text */ $handler->display->display_options['fields']['nothing']['id'] = 'nothing'; $handler->display->display_options['fields']['nothing']['table'] = 'views'; $handler->display->display_options['fields']['nothing']['field'] = 'nothing'; $handler->display->display_options['fields']['nothing']['label'] = ''; $handler->display->display_options['fields']['nothing']['alter']['text'] = '[edit_node] [delete_node]'; $handler->display->display_options['fields']['nothing']['element_label_colon'] = FALSE; /* Sort criterion: Chado Library: Id */ $handler->display->display_options['sorts']['library_id']['id'] = 'library_id'; $handler->display->display_options['sorts']['library_id']['table'] = 'library'; $handler->display->display_options['sorts']['library_id']['field'] = 'library_id'; $handler->display->display_options['sorts']['library_id']['order'] = 'DESC'; /* Filter criterion: Chado Organism: Common Name */ $handler->display->display_options['filters']['common_name']['id'] = 'common_name'; $handler->display->display_options['filters']['common_name']['table'] = 'organism'; $handler->display->display_options['filters']['common_name']['field'] = 'common_name'; $handler->display->display_options['filters']['common_name']['value'] = 'All'; $handler->display->display_options['filters']['common_name']['group'] = '0'; $handler->display->display_options['filters']['common_name']['exposed'] = TRUE; $handler->display->display_options['filters']['common_name']['expose']['operator_id'] = 'common_name_op'; $handler->display->display_options['filters']['common_name']['expose']['label'] = 'Organism'; $handler->display->display_options['filters']['common_name']['expose']['operator'] = 'common_name_op'; $handler->display->display_options['filters']['common_name']['expose']['identifier'] = 'organism_common_name'; $handler->display->display_options['filters']['common_name']['expose']['remember_roles'] = [ 2 => '2', 1 => 0, 3 => 0, ]; /* Filter criterion: Chado Library: Type Id */ $handler->display->display_options['filters']['type_id']['id'] = 'type_id'; $handler->display->display_options['filters']['type_id']['table'] = 'library'; $handler->display->display_options['filters']['type_id']['field'] = 'type_id'; $handler->display->display_options['filters']['type_id']['group'] = '0'; $handler->display->display_options['filters']['type_id']['exposed'] = TRUE; $handler->display->display_options['filters']['type_id']['expose']['operator_id'] = 'type_id_op'; $handler->display->display_options['filters']['type_id']['expose']['label'] = 'Type'; $handler->display->display_options['filters']['type_id']['expose']['operator'] = 'type_id_op'; $handler->display->display_options['filters']['type_id']['expose']['identifier'] = 'type_id'; $handler->display->display_options['filters']['type_id']['expose']['remember_roles'] = [ 2 => '2', 1 => 0, 3 => 0, ]; /** MANUALLY ADD since filter handler no exporting correctly */ $handler->display->display_options['filters']['common_name']['expose']['values_form_type'] = 'select'; $handler->display->display_options['filters']['common_name']['expose']['select_multiple'] = FALSE; $handler->display->display_options['filters']['common_name']['expose']['select_optional'] = TRUE; $handler->display->display_options['filters']['common_name']['expose']['max_length'] = 40; /* Display: Page */ $handler = $view->new_display('page', 'Page', 'page_1'); $handler->display->display_options['path'] = 'admin/tripal/legacy/tripal_library/libraries'; $handler->display->display_options['menu']['type'] = 'default tab'; $handler->display->display_options['menu']['title'] = 'Libraries'; $handler->display->display_options['menu']['description'] = 'A library is a collection of features of a given type. For example, a cDNA or BAC clone library.'; $handler->display->display_options['menu']['weight'] = '0'; $handler->display->display_options['menu']['name'] = 'management'; $handler->display->display_options['menu']['context'] = 0; $handler->display->display_options['menu']['context_only_inline'] = 0; $handler->display->display_options['tab_options']['weight'] = '0'; /** MANUALLY ADD since filter handler no exporting correctly * $handler->display->display_options['filters']['common_name']['expose']['values_form_type'] = 'select'; * $handler->display->display_options['filters']['common_name']['expose']['select_multiple'] = FALSE; * $handler->display->display_options['filters']['common_name']['expose']['select_optional'] = TRUE; * $handler->display->display_options['filters']['common_name']['expose']['max_length'] = 40; */ return $view; }