'schema', // The name of the term. 'term_name' => 'publication', // The unique ID (i.e. accession) of the term. 'term_accession' => 'publication', // Set to TRUE if the site admin is allowed to change the term // type. This will create form elements when editing the field instance // to allow the site admin to change the term settings above. 'term_fixed' => FALSE, ]; // The default widget for this field. public static $default_widget = 'schema__publication_widget'; // The default formatter for this field. public static $default_formatter = 'schema__publication_formatter'; // -------------------------------------------------------------------------- // PROTECTED CLASS MEMBERS -- DO NOT OVERRIDE // -------------------------------------------------------------------------- // An array containing details about the field. The format of this array // is the same as that returned by field_info_fields() protected $field; // An array containing details about an instance of the field. A field does // not have to have an instance. But if dealing with an instance (such as // when using the widgetForm, formatterSettingsForm, etc.) it should be set. protected $instance; /** * @see TripalField::elementInfo() */ public function elementInfo() { $field_term = $this->getFieldTermID(); return [ $field_term => [ 'operations' => [], 'sortable' => FALSE, 'searchable' => FALSE, 'type' => 'xs:string', 'readonly' => TRUE, ], ]; } /** * * @see TripalField::load() */ public function load($entity) { $record = $entity->chado_record; $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->instance['settings']['chado_table']; $field_column = $this->instance['settings']['chado_column']; $base_table = $this->instance['settings']['base_table']; // These fields are used when the publications come through a linker table. $pkey = ''; $fkey_lcolumn = ''; $fkey_rcolumn = ''; $linker_table = ''; // If we don't have a chado record return before creating a stub for this field! if (!$record) { return; } // If the field table and the base table are not the same thing then // we are going through a linker table. if ($field_table != $base_table) { // Get the FK that links to the base record. $schema = chado_get_schema($field_table); $pkey = $schema['primary key'][0]; $fkey_lcolumn = key($schema['foreign keys'][$base_table]['columns']); $fkey_rcolumn = $schema['foreign keys'][$base_table]['columns'][$fkey_lcolumn]; $linker_table = $base_table . '_pub'; // Set some defaults for the empty record. $entity->{$field_name}['und'][0] = [ 'value' => [], 'chado-' . $field_table . '__' . $pkey => '', 'chado-' . $field_table . '__' . $fkey_lcolumn => '', 'chado-' . $field_table . '__' . 'pub_id' => '', ]; } // Otherwise, the base table has a pub_id field. else { $entity->{$field_name}['und'][0] = [ 'value' => [], 'chado-' . $field_table . '__' . $field_column => '', ]; } // Get the list of publications $pubs = []; if ($linker_table) { $options = [ 'return_array' => 1, ]; $record = chado_expand_var($record, 'table', $linker_table, $options); if (property_exists($record, $linker_table) and is_array($record->$linker_table) and count($record->$linker_table) > 0) { $i = 0; foreach ($record->$linker_table as $index => $linker) { $pub = $linker->pub_id; $pubs[$pub->pub_id] = [ 'pub' => $pub, 'pkey' => $linker->$pkey, ]; } } } else { $pub = $record->{$field_column}; if ($pub) { $pubs[$pub->pub_id]['pub'] = $pub; } } $i = 0; foreach ($pubs as $pub_id => $pub) { $pub_details = chado_get_minimal_pub_info($pub['pub']); $entity->{$field_name}['und'][$i]['value'] = $pub_details; if ($linker_table) { $entity->{$field_name}['und'][$i]['chado-' . $field_table . '__' . $pkey] = $pub['pkey']; $entity->{$field_name}['und'][$i]['chado-' . $field_table . '__' . $fkey_lcolumn] = $linker->$fkey_lcolumn->$fkey_lcolumn; $entity->{$field_name}['und'][$i]['chado-' . $field_table . '__' . 'pub_id'] = $pub_id; } else { $entity->{$field_name}['und'][$i]['chado-' . $field_table . '__' . $field_column] = $pub_id; } if (property_exists($pub['pub'], 'entity_id')) { $entity->{$field_name}['und'][$i]['value']['entity'] = 'TripalEntity:' . $pub['pub']->entity_id; } $i++; } } }