t('MD5 checksum'), 'description' => t('A field for generating MD5 checksum for a sequence.'), 'default_widget' => 'chado_feature__md5checksum_widget', 'default_formatter' => 'chado_feature__md5checksum_formatter', 'settings' => array(), 'storage' => array( 'type' => 'field_chado_storage', 'module' => 'tripal_chado', 'active' => TRUE ), ); } /** * @see TripalField::attach_info() */ function attach_info($entity_type, $bundle, $settings) { $field_info = array(); $table_name = $settings['data_table']; $type_table = $settings['type_table']; $type_field = $settings['field']; $cv_id = $settings['cv_id']; $cvterm_id = $settings['cvterm_id']; // If this is not the feature table then we don't want to attach. if ($table_name != 'feature') { return $field_info; } // Create an array with information about this field. $field_info = array( 'field_name' => 'feature__md5checksum', 'field_type' => 'chado_feature__md5checksum', 'widget_type' => 'chado_feature__md5checksum_widget', 'description' => 'The MD5 checksum for the sequence.', 'label' => 'MD5 Checksum', 'is_required' => 0, 'storage' => 'field_chado_storage', 'widget_settings' => array( 'display_label' => 1 ), 'field_settings' => array( 'chado_table' => $table_name, 'chado_column' => 'md5checksum', 'semantic_web' => array( 'name' => 'md5_checksum', 'accession' => 'md5_checksum', 'ns' => 'local', 'nsurl' => '', ), ), ); return $field_info; } /** * @see TripalField::widget_info() */ function widget_info() { return array( 'label' => t('MD5 Checksum Checkbox'), 'field types' => array('chado_feature__md5checksum'), ); } /** * @see TripalField::formatter_info() */ function formatter_info() { return array( 'label' => t('MD5 Checksum'), 'field types' => array('chado_feature__md5checksum'), 'settings' => array( ), ); } /** * @see TripalField::formatter_view() */ function formatter_view(&$element, $entity_type, $entity, $field, $instance, $langcode, $items, $display) { foreach ($items as $delta => $item) { $content = key_exists('value', $item) ? $item['value'] : ''; $element[$delta] = array( // We create a render array to produce the desired markup, '#type' => 'markup', '#markup' => $content, ); } } /** * @see TripalField::widget_form() */ function widget_form(&$widget, $form, $form_state, $field, $instance, $langcode, $items, $delta, $element) { $widget['value'] = array( '#type' => 'checkbox', '#title' => $element['#title'], '#description' => $element['#description'], '#options' => array(0, 1), '#default_value' => 1, '#weight' => isset($element['#weight']) ? $element['#weight'] : 0, '#delta' => $delta, '#element_validate' => array('chado_feature__md5checksum_widget_validate'), ); } /** * @see TripalField::load() */ function load($field, $entity, $details) { $record = $details['record']; $field_name = $field['field_name']; if ($record and property_exists($record, 'md5checksum')) { $entity->{$field_name}['und'][] = array('value' => $record->md5checksum); } } } /** * Callback function for validating the chado_feature__md5checksum_widget. */ function chado_feature__md5checksum_widget_validate($element, &$form_state) { $field_name = $element['#parents'][0]; // Calculate the md5 checksum for the sequence only if md5 box is checked and // the residues exist. $residues = tripal_chado_get_field_form_values('feature__residues', $form_state); if ($residues) { $residues = preg_replace('/\s/', '', $residues); tripal_chado_set_field_form_values($field_name, $form_state, md5($residues)); } else { // Otherwise, remove the md5 value tripal_chado_set_field_form_values($field_name, $form_state, '__NULL__'); } }