t('Expression'), 'description' => t('Associates an expression with this record.'), 'default_widget' => 'chado_linker__expression_widget', 'default_formatter' => 'chado_linker__expression_formatter', 'settings' => array(), 'storage' => array( 'type' => 'field_chado_storage', 'module' => 'tripal_chado', 'active' => TRUE ), ); } function widget_info() { return array( 'label' => t('Expressions'), 'field types' => array('chado_linker__expression'), ); } public function formatter_info() { return array( 'label' => t('Expression'), 'field types' => array('chado_linker__expression'), 'settings' => array( ), ); } public function attach_info($entity_type, $bundle, $settings) { $field_info = array(); $table_name = $settings['data_table']; $type_table = $settings['type_table']; $type_field = $settings['field']; $cv_id = $settings['cv_id']; $cvterm_id = $settings['cvterm_id']; // If the linker table does not exists then we don't want to add attach. $expression_table = $table_name . '_expression'; if (!chado_table_exists($expression_table)) { return $field_info; } $schema = chado_get_schema($expression_table); $pkey = $schema['primary key'][0]; // Initialize the field array. $field_info = array( 'field_name' => $table_name . '__expression', 'field_type' => 'chado_linker__expression', 'widget_type' => 'chado_linker__expression_widget', 'widget_settings' => array('display_label' => 1), 'description' => '', 'label' => 'Expression', 'is_required' => 0, 'cardinality' => FIELD_CARDINALITY_UNLIMITED, 'storage' => 'field_chado_storage', 'field_settings' => array( 'chado_table' => $expression_table, 'chado_column' => $pkey, 'base_table' => $table_name, 'semantic_web' => array( 'name' => '', 'accession' => '', 'ns' => '', 'nsurl' => '', ), ), ); return $field_info; } public function formatter_settings_summary($field, $instance, $view_mode) { } public function formatter_settings_form($field, $instance, $view_mode, $form, &$form_state) { } public function formatter_view(&$element, $entity_type, $entity, $field, $instance, $langcode, $items, $display) { } public function widget_form(&$widget, $form, $form_state, $field, $instance, $langcode, $items, $delta, $element) { } public function load($field, $entity, $record) { $field_name = $field['field_name']; $field_type = $field['type']; $field_table = $field['settings']['chado_table']; $field_column = $field['settings']['chado_column']; // Get the FK that links to the base record. $schema = chado_get_schema($field_table); $base_table = $record['record']->tablename; $pkey = $schema['primary key'][0]; $fkey_lcolumn = key($schema['foreign keys'][$base_table]['columns']); $fkey_rcolumn = $schema['foreign keys'][$base_table]['columns'][$fkey_lcolumn]; // Set some defaults for the empty record. $entity->{$field_name}['und'][0] = array( 'value' => '', $field_table . '__' . $fkey_lcolumn => '', $field_table . '__' . 'expression_id' => '', $field_table . '--' . 'expression__name' => '', ); $linker_table = $base_table . '_expression'; $options = array( 'return_array' => 1, ); $record = chado_expand_var($record, 'table', $linker_table, $options); if (count($record->$linker_table) > 0) { $i = 0; foreach ($record->$linker_table as $index => $linker) { $expression = $linker->expression_id; $entity->{$field_name}['und'][$i] = array( 'value' => $linker->$pkey, $field_table . '__' . $fkey_lcolumn => $linker->$fkey_lcolumn->$fkey_lcolumn, $field_table . '__' . 'expression_id' => $expression->expression_id, $field_table . '--' . 'expression__name' => $expression->uniquename, ); if (property_exists($entity->chado_record->$field_column, 'entity_id')) { $fk_entity_id = $entity->chado_record->$field_column->entity_id; $entity->{$field_name}['und'][$i]['entity_id'] = $fk_entity_id; $entity->{$field_name}['und'][$i]['entity_type'] = 'TripalEntity'; } $i++; } } } public function settings_form($field, $instance, $has_data) { } }