Create a new bulk loader template
"; $del_url = url("admin/tripal/tripal_bulk_loader_template/delete"); $output .= "Delete a bulk loader template"; return $output; } ////////////////////////////////////////////////////////////////////////////////////// // Create Template ////////////////////////////////////////////////////////////////////////////////////// /** * tripal_bulk_loader_admin_template_form */ function tripal_bulk_loader_create_template_base_form (&$form_state = NULL) { // Basic Details-------------------------------------------------------------- $form['bulk_loader'] = array( '#type' => 'fieldset', '#title' => t('Step 1: Basic Template Details'), ); $modules = module_invoke_all('tripal_bulk_loader_supported_modules'); $modules[''] = 'Select A Module'; if ($form_state['storage']['base_table']) { $base_table = $form_state['storage']['base_table']; } else { $base_table = ''; } $form['bulk_loader']['chado_module'] = array( '#title' => t('Chado Module'), '#description' => t('Please select the module for which you would like to create an importer'), '#type' => 'select', '#options' => $modules, '#default_value' => $base_table, '#weight' => 0, '#required' => TRUE ); $form['bulk_loader']['template_name'] = array( '#type' => 'textfield', '#title' => t('Template Name'), '#default_value' => $form_state['storage']['template_name'], ); if ($base_table) { // Add Fields--------------------------------------------------------------------- $form = array_merge($form, tripal_bulk_loader_add_template_field_form($form_state)); // List Current Fields------------------------------------------------------------ $form['current_fields'] = array( '#type' => 'fieldset', '#title' => t('Step 3: Confirm Fields') ); if ($form_state['storage']['template']) { $form['current_fields']['items'] = array( '#type' => 'item', '#value' => theme('tripal_bulk_loader_template', $form_state['storage']['template_id']), ); } else { $form['current_fields']['items'] = array( '#type' => 'item', '#value' => t('There are currently no fields added to this template.'), ); } // Submit------------------------------------------------------------------------- $form['submit-save'] = array( '#type' => 'submit', '#value' => 'Save Template' ); } else { $form['submit-next_step'] = array( '#type' => 'submit', '#value' => 'Next Step' ); } //end of if base details are set return $form; } /** * tripal_bulk_loader_admin_template_form_validate */ function tripal_bulk_loader_create_template_base_form_validate($form, &$form_state){ if(!$form_state['ahah_submission']) { if ($form_state['values']['op'] == 'Add Field') { if ($form_state['values']['type'] == 'column') { if (!$form_state['values']['column']) { form_set_error('column', 'Column is Required!'); } if (!$form_state['values']['sheet']) { form_set_error('sheet', 'Worksheet Name is Required!'); } } elseif ($form_state['values']['type'] == 'constant') { if (!$form_state['values']['constant_value']) { form_set_error('constant_value', 'Value of Constant is Required!'); } } } elseif ($form_state['values']['op'] == 'Save Template') { if (!$form_state['storage']['template']) { form_set_error('', 'Tempalte must contain at least one field'); } } } } /** * tripal_bulk_loader_admin_template_form_submit */ function tripal_bulk_loader_create_template_base_form_submit($form, &$form_state){ // AHAH Storage ---------------------------------------------------------- $form_state['rebuild'] = TRUE; $form_state['storage']['base_table'] = $form_state['values']['chado_module']; $form_state['storage']['template_name'] = $form_state['values']['template_name']; if (!$form_state['ahah_submission']) { // When template is first defined if ($form_state['values']['op'] == 'Next Step') { $record = array( 'name' => $form_state['values']['template_name'], 'template_array' => ' ' ); drupal_write_record('tripal_bulk_loader_template', $record); $form_state['storage']['template_id'] = $record['template_id']; // Add Field to Template---------------------------------------------- } elseif ($form_state['values']['op'] == 'Add Field') { $form_state = tripal_bulk_loader_add_template_field_form_submit($form_state); // Save Template ---------------------------------------------------- } $record = array( 'name' => $form_state['values']['template_name'], 'template_array' => serialize($form_state['storage']['template']) ); //Check if template exists $sql = "SELECT count(*) as count FROM tripal_bulk_loader_template WHERE name='%s'"; if (db_result(db_query($sql, $form_state['values']['template_name']))) { // Update Previous drupal_write_record('tripal_bulk_loader_template', $record, array('name')); } else { // Insert New drupal_write_record('tripal_bulk_loader_template', $record); } } //end of if not ahah submission else { $form_state = tripal_bulk_loader_add_template_field_form_submit($form_state); } } ////////////////////////////////////////////////////////////////////////////////////// // Edit Template ////////////////////////////////////////////////////////////////////////////////////// /** * */ function tripal_bulk_loader_edit_template_base_form ($form_state = NULL){ $form = array(); $sql = "SELECT * FROM {tripal_bulk_loader_template}"; $resource = db_query($sql); $templates = array(); $templates[''] = 'Select a Template'; while ($r = db_fetch_object($resource)) { $templates[$r->template_id] = $r->name; } if ($form_state['storage']['template_id']) { $form['template_name'] = array( '#type' => 'item', '#title' => 'Template', '#value' => $templates[$form_state['storage']['template_id']], ); } else { $form['template_name'] = array( '#title' => t('Template'), '#description' => t('Please select the template you would like to edit.'), '#type' => 'select', '#options' => $templates, '#default_value' => $form_state['storage']['template_id'], '#weight' => 0, '#required' => TRUE, ); } $form['records'] = array( '#type' => ($form_state['storage']['template_id'])? 'fieldset' : 'hidden', '#title' => t('Current Records'), '#weight' => -10, ); $form['records']['description'] = array( '#type' => 'item', '#value' => 'Records will be inserted into the chado database in the order listed below. To ' .'change this order: ', ); $form['records']['records-data'] = array( '#tree' => TRUE, ); $form['records']['no_records'] = array( '#type' => 'hidden', '#value' => TRUE, ); $form['records']['submit-reorder'] = array( '#type' => 'submit', '#value' => 'Save Order', ); $form['fields'] = array( '#type' => ($form_state['storage']['template_id'])? 'fieldset' : 'hidden', '#title' => t('Current Fields'), '#weight' => 2, ); $form['fields']['fields-data'] = array( '#tree' => TRUE, ); if ($form_state['storage']['template']) { // List Current Fields ------------------------------------------------------------- $i=1; foreach ($form_state['storage']['template'] as $priority => $table_array) { if (!is_array($table_array)) { continue; } $form['records']['no_records']['#value'] = FALSE; $form['records']['records-data'][$priority] = array( 'title' => array( '#type' => 'markup', '#value' => $table_array['record_id'], ), 'chado_table' => array( '#type' => 'markup', '#value' => $table_array['table'], ), 'new_priority' => array( '#type' => 'select', '#options' => range(1, sizeof($form_state['storage']['template'])), '#default_value' => $priority, ), 'old_priority' => array( '#type' => 'hidden', '#value' => $priority, ), 'id' => array( '#type' => 'hidden', '#value' => $priority, ), ); foreach ($table_array['fields'] as $field_index => $field) { $form['fields']['fields-data'][$i] = array( 'record_id' => array( '#type' => 'item', '#value' => $table_array['record_id'], ), 'priority_hidden' => array( '#type' => 'hidden', '#value' => $priority, ), 'field_name' => array( '#type' => 'item', '#value' => $field['title'], ), 'chado_table_name' => array( '#type' => 'item', '#value' => $table_array['table'], ), 'chado_table_hidden' => array( '#type' => 'hidden', '#value' => $table_array['table'], ), 'chado_field_name' => array( '#type' => 'item', '#value' => $field['field'], ), 'sheet_name' => array( '#type' => 'item', '#value' => $field['spreadsheet sheet'], ), 'column_num' => array( '#type' => 'item', '#value' => $field['spreadsheet column'], ), 'constant_value' => array( '#type' => 'item', '#value' => $field['constant value'], ), 'field_index' => array( '#type' => 'hidden', '#value' => $field_index ), 'foreign_record_id' => array( '#type' => 'item', '#value' => $field['foreign key'], ), 'edit_submit' => array( '#type' => 'submit', '#value' => "Edit Field #$i", ), 'delete_submit' => array( '#type' => 'submit', '#value' => "Delete Field #$i", ), ); $i++; } } $form['fields']['total_fields'] = array( '#type' => 'item', '#value' => $i, ); $form['fields']['add_field'] = array( '#type' => 'submit', '#value' => 'Add Field', ); } $value = ($form_state['storage']['template_id'])? 'Save Template' : 'Edit Template'; $form['submit'] = array( '#type' => 'submit', '#value' => $value ); dpm($_SESSION, 'SESSION -main'); return $form; } /** * */ function tripal_bulk_loader_edit_template_base_form_submit($form, &$form_state){ dpm('SUBMIT: Edit Base'); $form_state['rebuild'] = TRUE; if (preg_match('/^\d+$/', $form_state['values']['template_name'])) { $form_state['storage']['template_id'] = $form_state['values']['template_name']; } $sql = "SELECT * FROM {tripal_bulk_loader_template} WHERE template_id=%d"; $result = db_fetch_object(db_query($sql, $form_state['storage']['template_id'])); $form_state['storage']['template'] = unserialize($result->template_array); switch ($form_state['values']['op']) { // Initialize after template is chosen ---------------------------------------- case 'Edit Template': $form_state['storage']['record2priority'] = array(); foreach ($form_state['storage']['template'] as $priority => $record_array) { if (!is_array($record_array)) { continue; } $form_state['storage']['record2priority'][$record_array['record_id']] = $priority; } break; // Save Reordered Records ----------------------------------------------------- case 'Save Order': dpm('save order'); $new_template = $form_state['storage']['template']; // unset old elements $form_state['storage']['record2priority'] = array(); foreach ($new_template as $priority => $record_array) { if (preg_match('/\d+/', $priority)) { unset($new_template[$priority]); } } //set elements in new order foreach ($form_state['values']['records-data'] as $item) { $new_template[$item['new_priority']] = $form_state['storage']['template'][$item['old_priority']]; $record_name = $new_template[$item['new_priority']]['record_id']; $form_state['storage']['record2priority'][$record_name] = $item['new_priority']; } ksort($new_template); $form_state['storage']['template'] = $new_template; break; case 'Add Field': drupal_goto('admin/tripal/tripal_bulk_loader_template/edit/add_field', array('template_id'=>$form_state['storage']['template_id'])); break; default: // Delete Field --------------------------------------------------------------- if (preg_match('/Delete Field #(\d+)/', $form_state['values']['op'], $matches)) { $field_data = $form_state['values']['fields-data'][$matches[1]]; $priority = $field_data['priority_hidden']; $field_key = $field_data['field_index']; unset($form_state['storage']['template'][$priority]['fields'][$field_key]); if (!$form_state['storage']['template'][$priority]['fields']) { unset($form_state['storage']['record2priority'][$form_state['storage']['template'][$priority]['record_id']]); unset($form_state['storage']['template'][$priority]); } drupal_set_message('Deleted Field from Template.'); // Edit Field ----------------------------------------------------------------- } elseif (preg_match('/Edit Field #(\d+)/', $form_state['values']['op'], $matches)) { $field_data = $form_state['values']['fields-data'][$matches[1]]; $priority = $field_data['priority_hidden']; $field_key = $field_data['field_index']; } break; } //end of switch // Save Template $record = array( 'template_id' => $form_state['storage']['template_id'], 'template_array' => serialize($form_state['storage']['template']) ); drupal_write_record('tripal_bulk_loader_template', $record, array('template_id')); drupal_set_message('Template Saved.'); } ////////////////////////////////////////////////////////////////////////////////////// // Delete Template ////////////////////////////////////////////////////////////////////////////////////// function tripal_bulk_loader_delete_template_base_form () { $form = array(); $sql = "SELECT * FROM {tripal_bulk_loader_template}"; $resource = db_query($sql); $templates = array(); $templates[''] = 'Select a Template'; while ($r = db_fetch_object($resource)) { $templates[$r->template_id] = $r->name; } $form['template_name'] = array( '#title' => t('Template'), '#description' => t('Please select the template you would like to edit.'), '#type' => 'select', '#options' => $templates, '#weight' => 0, '#required' => TRUE, ); $form['submit'] = array( '#type' => 'submit', '#value' => 'Delete Template', ); return $form; } function tripal_bulk_loader_delete_template_base_form_submit ($form, &$form_state) { $sql = "DELETE FROM {tripal_bulk_loader_template} WHERE template_id=%d"; db_query($sql, $form_state['values']['template_name']); } ////////////////////////////////////////////////////////////////////////////////////// // Add/Edit Field Forms (meant to be returned as part of a larger form) ////////////////////////////////////////////////////////////////////////////////////// /** * Add Field Form * * This form meant to be part of a larger form. Currently it is part of the following: * - tripal_bulk_loader_add_template_base_form * - tripal_bulk_loader_edit_template_base_form * * @param $form_state * The $form_state from the parent form * @return * The parent form with the edit field fieldset added * * Usage: * @code $form = array_merge($form, tripal_bulk_loader_add_template_field_form($form_state)); * @endcode */ function tripal_bulk_loader_add_template_field_form (&$form_state = NULL) { $form = array(); dpm($form_state, 'form state'); // get template id from path $template_id = ($_GET['template_id']) ? $_GET['template_id'] : $form_state['values']['template_id']; // if there is no template supplied don't return rest of form if (!$template_id) { return $form; } if (!$form_state['storage']['template']) { $sql = "SELECT * FROM {tripal_bulk_loader_template} WHERE template_id=%d"; $template = db_fetch_object(db_query($sql, $template_id)); } else { $template = $form_state['storage']['template']; } $form['template_name'] = array( '#type' => 'item', '#title' => 'Template', '#value' => $template->name, ); $form['template_id'] = array( '#type' => 'hidden', '#value' => $template_id, ); $form['referring URL'] = array( '#type' => 'hidden', '#value' => ($form_state['storage']['referring_URL']) ? $form_state['storage']['referring_URL'] : $_SERVER["HTTP_REFERER"], ); $form['add_fields'] = array( '#type' => 'fieldset', '#prefix' => '
', '#suffix' => '
', ); $field_type = ($form_state['values']['add-type'])? $form_state['values']['add-type'] : 'NONE'; $form['add_fields']['add-type'] = array( '#type' => 'radios', '#title' => t('Type of Field'), '#options' => array( 'table field' => t('Spreadsheet: Fields which maps to a Spreadsheet Column'), 'constant' => t('Constant: Field which remains Constant throughout the Spreadsheet'), 'foreign key' => t('Foreign Key: Fields which map to a record in another table'), ), '#required' => TRUE, '#default_value' => $field_type, '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/add/field_type_ahah', 'wrapper' => 'tripal_bulk_loader_template-add_field', 'effect' => 'fade' ), ); if (!$form_state['values']['add-type']) { $form['add_fields']['submit-type'] = array( '#type' => 'submit', '#value' => 'Submit', ); } if ($form_state['values']['add-type']) { // check template array for records then add one more if (!$form_state['storage']['record2priority']) { $groups = array(); } else { $groups = array_flip($form_state['storage']['record2priority']); } $groups['NONE'] = 'Select a Record'; $groups['NEW'] = 'New Record'; $form['add_fields']['field_group'] = array( '#type' => 'select', '#title' => 'Record', '#description' => 'This is used to group a set of fields together allowing ' .'multiple records to be inserted into the same table per line of the spreadsheet', '#options' => $groups, '#default_value' => (preg_match('/\w+.*/',$form_state['values']['field_group'])) ? $form_state['values']['field_group'] : 'NONE', '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/add/record_group_ahah', 'wrapper' => 'tripal_bulk_loader_template-add_record', 'effect' => 'fade' ), ); $form['add_fields']['record_name'] = array( '#type' => (preg_match('/NEW/', $form_state['values']['field_group'])) ? 'textfield' : 'hidden', '#title' => 'Unique Record Name', '#prefix' => '
', '#suffix' => '
', ); $form['add_fields']['field_title'] = array( '#type' => 'textfield', '#title' => t('Human-readable Title for Field'), '#default_value' => $form_state['values']['field_title'], ); // Spreadsheet column $form['add_fields']['columns'] = array( '#type' => ($field_type == 'table field')? 'fieldset' : 'hidden', '#title' => t('Spreadsheet Column'), ); $form['add_fields']['columns']['sheet_name'] = array( '#type' => 'textfield', '#title' => t('Worksheet'), '#description' => t('Specify the name of the worksheet.'), '#size' => 5, '#default_value' => ($form_state['values']['sheet_name'])? $form_state['values']['sheet_name'] : 'Sheet1', ); $form['add_fields']['columns']['column_number'] = array( '#type' => 'textfield', '#title' => t('Column'), '#description' => t('Specify the column in the spreadsheet that this field maps to where the first column is 1.'), '#size' => 5, '#default_value' => $form_state['values']['column_number'], ); // Global Value $form['add_fields']['constant'] = array( '#type' => ($field_type == 'constant')? 'fieldset' : 'hidden', '#title' => t('Constant'), ); $form['add_fields']['constant']['constant_value'] = array( '#type' => 'textfield', '#title' => t('Constant Value'), '#description' => t('Specify the value you wish this field to have regardless of spreadsheet data.'), '#default_value' => $form_state['values']['constant_value'] ); // Chado Field $form['add_fields']['chado'] = array( '#type' => 'fieldset', '#title' => t('Chado Field/Column Details'), '#description' => t('Specify the Table/Field in chado that this field maps to.'), ); $tables = tripal_core_get_chado_tables(); if ($form_state['values']['record_name']) { $record_name = $form_state['values']['record_name']; $priority = $form_state['storage']['record2priority'][$record_name]; $table = $form_state['storage']['template']->template_array[$priority]['table']; } else { $priority = $form_state['values']['field_group']; $table = $form_state['storage']['template']->template_array[$priority]['table']; } dpm($table, 'table'); if (!$table) { $table = reset($tables); } $form['add_fields']['chado']['chado_table'] = array( '#type' => 'select', '#title' => t('Chado Table'), '#options' => $tables, '#default_value' => $table, '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/add_field_ahah', 'wrapper' => 'tripal_bulk_loader_template-add_field', 'effect' => 'fade' ), ); $chado_fields = array(); $table_description = module_invoke_all('chado_'.$table.'_schema'); if ($field_type == 'foreign key') { $foreign_field2table = array(); foreach ($table_description['foreign keys'] as $key_table => $key_array) { foreach ($key_array['columns'] as $left_field => $right_field) { $chado_fields[$left_field] = $left_field; $foreign_field2table[$left_field] = $key_table; } } } else { foreach($table_description['fields'] as $field_name => $field_array) { $chado_fields[$field_name] = $field_name; } } $form['add_fields']['chado']['add-chado_field'] = array( '#type' => 'select', '#title' => t('Chado Field/Column'), '#options' => $chado_fields, '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/add_field_ahah', 'wrapper' => 'tripal_bulk_loader_template-add_field', 'effect' => 'fade' ), ); // Foreign Key $form['add_fields']['foreign_key'] = array( '#type' => ($field_type == 'foreign key')? 'fieldset' : 'hidden', '#title' => 'Foreign Key', ); $groups = array(); $field = reset($chado_fields); $foreign_table = $foreign_field2table[$field]; foreach ($form_state['storage']['record2priority'] as $record_name => $priority ) { if (preg_match('/'.$foreign_table.'/', $form_state['storage']['template']->template_array[$priority]['table'])) { $groups[$record_name] = $record_name; } } $groups['NULL'] = 'None'; $form['add_fields']['foreign_key']['add-field_foreign_key'] = array( '#type' => 'select', '#title' => 'Record to refer to', '#descripion' => 'Select the record that this foreign key shouold refer to. The record needs to already exist and be of the correct table.', '#options' => $groups, ); // Extra Options $form['add_fields']['extra_options'] = array( '#type' => 'fieldset', '#title' => 'Additional Field Specific Options', '#description' => 'If there are additional options that can be specified for the current ' .'field they will appear here. Options available may include: specifying allowed values, ' .'indicating a field is required, exposing a field to the user, or specifying which record ' .'fully describes the foreign key for another table. Only some of these fields may be ' .'available to any given field.', ); $form['add_fields']['submit-add_field'] = array( '#type' => 'submit', '#value' => 'Add Field' ); } return $form; } /** * Add Field Submit * * This submit meant to be part of a larger form submit. Currently it is part of the following: * - tripal_bulk_loader_add_template_base_form_submit * - tripal_bulk_loader_edit_template_base_form_submit * * @param $form_state * The $form_state from the parent submit * @return * The parent form_state with any changes made * * Usage: * @code $form_state = tripal_bulk_loader_add_template_field_form_submit($form_state); * @endcode */ function tripal_bulk_loader_add_template_field_form_submit ($form, &$form_state) { if (!$form_state['storage']['template']) { $sql = "SELECT * FROM {tripal_bulk_loader_template} WHERE template_id=%d"; $template = db_fetch_object(db_query($sql, $form_state['values']['template_id'])); $template->template_array = unserialize($template->template_array); $form_state['storage']['template'] = $template; $form_state['storage']['record2priority'] = array(); foreach ($form_state['storage']['template']->template_array as $priority => $record_array) { if (!is_array($record_array)) { continue; } $form_state['storage']['record2priority'][$record_array['record_id']] = $priority; } } if (!$form_state['ahah_submission']) { if ($form_state['values']['op'] == 'Add Field') { // If new record if (preg_match('/NEW/',$form_state['values']['add-field_group'])) { $record_name = $form_state['values']['add-record_name']; $priority = sizeof($form_state['storage']['template']) + 1; $record2priority[$record_name] = $priority; $template[$priority]['table'] = $form_state['storage']['add']['chado_table']; $template[$priority]['record_id'] = $record_name; } else { $priority = $form_state['values']['add-field_group']; $record_name = $record2priority[$priority]; } $form_state['storage']['add']['priority'] = $priority; // Add field to template array if ($form_state['storage']['add']['field_type'] == 'table field') { $template[$priority]['fields'][] = array( 'type' => 'table field', 'title' => $form_state['storage']['add']['field_title'], 'field' => $form_state['storage']['add']['chado_field'], //'required' => , //'allowed values' => empty by default, 'spreadsheet sheet' => $form_state['storage']['add']['sheet_name'], 'spreadsheet column' => $form_state['storage']['add']['column_number'], //'exposed' => 'true|false' If exposed, will give a select box first from allowed values if set, second from database if values not set. //'mapping' => array( // 'from' => 'to' // '/from re/' => 'to' //), ); } elseif ($form_state['storage']['add']['field_type'] == 'constant') { $template[$priority]['fields'][] = array( 'type' => 'constant', 'title' => $form_state['storage']['add']['field_title'], 'field' => $form_state['storage']['add']['chado_field'], //'required' => , //'allowed values' => empty by default, 'constant value' => $form_state['storage']['add']['constant_value'], //'exposed' => 'true|false' If exposed, will give a select box first from allowed values if set, second from database if values not set. ); } elseif ($form_state['storage']['add']['field_type'] == 'foreign key') { $template[$priority]['fields'][] = array( 'type' => 'foreign key', 'title' => $form_state['storage']['add']['field_title'], 'field' => $form_state['storage']['add']['chado_field'], 'foreign key' => $form_state['values']['add-field_foreign_key'], //'required' => , ); } // Save Template $record = array( 'template_id' => $form_state['storage']['template_id'], 'template_array' => serialize($form_state['storage']['template']) ); drupal_write_record('tripal_bulk_loader_template', $record, array('template_id')); drupal_set_message('Successfully Added Field to Template'); drupal_set_message('Template Saved.'); //$_SESSION['tripal_bulk_loader']['edit_template']['add_field'] = FALSE; } } dpm ($form_state, 'Submit: form state'); } /** * Edit Field Form * * This form meant to be part of a larger form. Currently it is part of the following: * - tripal_bulk_loader_edit_template_base_form * * @param $form_state * The $form_state from the parent form * @return * The parent form with the edit field fieldset added * * Usage: * @code $form = array_merge($form, tripal_bulk_loader_edit_template_field_form($form_state)); * @endcode */ function tripal_bulk_loader_edit_template_field_form($form_state) { $form = array(); $base_table = $form_state['storage']['base_table']; if ($form_state['storage']['edit']['chado_table']) { $table = $form_state['storage']['edit']['chado_table']; } elseif ($form_state['storage']['template'][$form_state['values']['edit-field_group']]) { $table = $form_state['storage']['template'][$form_state['values']['edit-field_group']]['table']; } else { $table = $base_table; } $form['edit_fields'] = array( '#type' => 'fieldset', '#title' => t('Edit Fields'), ); $field_type = ($form_state['storage']['edit']['field_type'])? $form_state['storage']['edit']['field_type'] : 'table field'; $form['edit_fields']['edit-type'] = array( '#type' => 'radios', '#title' => t('Type of Field'), '#options' => array( 'table field' => t('Spreadsheet: Fields which maps to a Spreadsheet Column'), 'constant' => t('Constant: Field which remains Constant throughout the Spreadsheet'), 'foreign key' => t('Foreign Key: Fields which map to a record in another table'), ), '#default_value' => $field_type, '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/edit/change_subform_ahah', 'wrapper' => 'tripal_bulk_loader_template-subforms', 'effect' => 'fade' ), ); // check template array for records then add one more $groups = array_flip($form_state['storage']['record2priority']); $groups['NONE'] = 'Select a Record'; $groups['NEW'] = 'New Record'; $form['edit_fields']['edit-field_group'] = array( '#type' => 'select', '#title' => 'Record', '#description' => 'This is used to group a set of fields together allowing ' .'multiple records to be inserted into the same table per line of the spreadsheet', '#options' => $groups, '#default_value' => (preg_match('/\w+.*/',$form_state['values']['edit-field_group'])) ? $form_state['values']['edit-field_group'] : $form_state['storage']['edit_field']['initial_priority'], '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/add/record_group_ahah', 'wrapper' => 'tripal_bulk_loader_template-subforms', 'effect' => 'fade' ), ); $form['edit_fields']['edit-record_name'] = array( '#type' => (preg_match('/NEW/', $form_state['values']['edit-field_group'])) ? 'textfield' : 'hidden', '#title' => 'Unique Record Name', '#prefix' => '
', '#suffix' => '
' ); $form['edit_fields']['edit-field_title'] = array( '#type' => 'textfield', '#title' => t('Human-readable Title for Field'), '#default_value' => $form_state['storage']['edit']['field_title'], ); // Spreadsheet column $form['edit_fields']['columns'] = array( '#type' => ($field_type == 'table field')? 'fieldset' : 'hidden', '#title' => t('Spreadsheet Column'), ); $form['edit_fields']['columns']['edit-sheet'] = array( '#type' => 'textfield', '#title' => t('Worksheet'), '#description' => t('Specify the name of the worksheet.'), '#size' => 5, '#default_value' => ($form_state['storage']['edit']['sheet_name'])? $form_state['storage']['edit']['sheet_name'] : 'Sheet1', ); $form['edit_fields']['columns']['edit-column'] = array( '#type' => 'textfield', '#title' => t('Column'), '#description' => t('Specify the column in the spreadsheet that this field maps to where the first column is 1.'), '#size' => 5, '#default_value' => $form_state['storage']['edit']['column_number'], ); // Global Value $form['edit_fields']['constant'] = array( '#type' => ($field_type == 'constant')? 'fieldset' : 'hidden', '#title' => t('Constant'), ); $form['edit_fields']['constant']['edit-constant_value'] = array( '#type' => 'textfield', '#title' => t('Constant Value'), '#description' => t('Specify the value you wish this field to have regardless of spreadsheet data.'), '#default_value' => $form_state['storage']['edit']['constant_value'] ); // Chado Field $form['edit_fields']['chado'] = array( '#type' => 'fieldset', '#title' => t('Chado Field/Column Details'), '#prefix' => '
', '#suffix' => '
', '#description' => t('Specify the Table/Field in chado that this field maps to.'), ); $tables = tripal_core_get_chado_tables(); $form['edit_fields']['chado']['edit-chado_table'] = array( '#type' => 'select', '#title' => t('Chado Table'), '#options' => $tables, '#default_value' => $table, '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/edit/chado_column_ahah', 'wrapper' => 'tripal_bulk_loader-edit_chado_column', 'effect' => 'fade' ), ); $chado_fields = array(); $table_description = module_invoke_all('chado_'.$table.'_schema'); if ($field_type == 'foreign key') { $foreign_field2table = array(); foreach ($table_description['foreign keys'] as $key_table => $key_array) { foreach ($key_array['columns'] as $left_field => $right_field) { $chado_fields[$left_field] = $left_field; $foreign_field2table[$left_field] = $key_table; } } } else { foreach($table_description['fields'] as $field_name => $field_array) { $chado_fields[$field_name] = $field_name; } } $form['edit_fields']['chado']['edit-chado_field'] = array( '#type' => 'select', '#title' => t('Chado Field/Column'), '#options' => $chado_fields, '#default_value' => $form_state['storage']['edit']['chado_field'], '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/edit/change_subform_ahah', 'wrapper' => 'tripal_bulk_loader_template-subforms', 'effect' => 'fade' ), ); // Foreign Key $form['edit_fields']['foreign_key'] = array( '#type' => ($field_type == 'foreign key')? 'fieldset' : 'hidden', '#title' => 'Foreign Key', ); $groups = array(); $field = reset($chado_fields); $foreign_table = $foreign_field2table[$field]; if ($field) { foreach ( $form_state['storage']['record2priority'] as $record_name => $priority ) { if (preg_match('/'.$foreign_table.'/', $form_state['storage']['template'][$priority]['table'])) { $groups[$record_name] = $record_name; } } } $groups['NULL'] = 'None'; $form['edit_fields']['foreign_key']['edit-field_foreign_key'] = array( '#type' => 'select', '#title' => 'Record to refer to', '#descripion' => 'Select the record that this foreign key shouold refer to. The record needs to already exist and be of the correct table.', '#options' => $groups, ); //Extra options $form['edit_fields']['extra_options'] = array( '#type' => 'fieldset', '#title' => 'Additional Field Specific Options', '#description' => 'If there are additional options that can be specified for the current ' .'field they will appear here. Options available may include: specifying allowed values, ' .'indicating a field is required, exposing a field to the user, or specifying which record ' .'fully describes the foreign key for another table. Only some of these fields may be ' .'available to any given field.', '#prefix' => '
', '#suffix' => '
', ); $form['edit_fields']['submit-Edit_field'] = array( '#type' => 'submit', '#value' => 'Edit Field' ); return $form; } /** * Edit Field Submit * * This submit meant to be part of a larger form submit. Currently it is part of the following: * - tripal_bulk_loader_edit_template_base_form_submit * * @param $form_state * The $form_state from the parent submit * @return * The parent form_state with any changes made * * Usage: * @code $form_state = tripal_bulk_loader_edit_template_field_form_submit($form_state); * @endcode */ function tripal_bulk_loader_edit_template_field_form_submit ($form_state) { if (preg_match('/Edit Field #(\d+)/', $form_state['values']['op'], $matches) && preg_match('/change_subform/', $form_state['ahah_triggered'])) { $form_state['storage']['display_subform'] = 'edit_field'; $table = $form_state['values']["chado_table_hidden-".$matches[1]]; $field_key = $form_state['values']["field_index-".$matches[1]]; $priority = $form_state['values']["field_priority_hidden-".$matches[1]]; $form_state['storage']['edit_field'] = $form_state['storage']['template'][$priority]['fields'][$field_key]; $form_state['storage']['edit_field']['table'] = $table; $form_state['storage']['edit_field']['initial_priority'] = $priority; $form_state['storage']['edit_field']['field_index'] = $field_key; $set_default = TRUE; $field_template = $form_state['storage']['edit_field']; } else { $set_default = FALSE; } if ($set_default) { $form_state['storage']['edit']['field_title'] = $field_template['title']; $form_state['storage']['edit']['field_type'] = $field_template['type']; $form_state['storage']['edit']['sheet_name'] = $field_template['spreadsheet sheet']; $form_state['storage']['edit']['column_number'] = $field_template['spreadsheet column']; $form_state['storage']['edit']['constant_value'] = $field_template['constant value']; $form_state['storage']['edit']['chado_table'] = $field_template['table']; $form_state['storage']['edit']['chado_field'] = $field_template['field']; } else { $form_state['storage']['edit']['field_title'] = $form_state['values']['edit-field_title']; $form_state['storage']['edit']['field_type'] = $form_state['values']['edit-type']; $form_state['storage']['edit']['sheet_name'] = $form_state['values']['edit-sheet']; $form_state['storage']['edit']['column_number'] = $form_state['values']['edit-column']; $form_state['storage']['edit']['constant_value'] = $form_state['values']['edit-constant_value']; $form_state['storage']['edit']['chado_table'] = $form_state['values']['edit-chado_table']; $form_state['storage']['edit']['chado_field'] = $form_state['values']['edit-chado_field']; } if (!$form_state['ahah_submission']) { if ($form_state['values']['op'] == 'Edit Field') { // remove display of edit form $form_state['storage']['display_subform'] = ''; // If new record if (preg_match('/NEW/',$form_state['values']['edit-field_group'])) { // add new record $record_name = $form_state['values']['edit-record_name']; $priority = sizeof($form_state['storage']['template']) + 1; $old_priority = $form_state['storage']['edit_field']['initial_priority']; $field_index = $form_state['storage']['edit_field']['field_index']; $form_state['storage']['record2priority'][$record_name] = $priority; $form_state['storage']['template'][$priority]['table'] = $form_state['storage']['edit']['chado_table']; $form_state['storage']['template'][$priority]['record_id'] = $record_name; } else { $priority = $form_state['values']['edit-field_group']; $old_priority = $form_state['storage']['edit_field']['initial_priority']; $field_index = $form_state['storage']['edit_field']['field_index']; $record_name = $form_state['storage']['record2priority'][$priority]; } if ($form_state['storage']['edit']['field_type'] == 'table field') { $field = array( 'type' => 'table field', 'title' => $form_state['storage']['edit']['field_title'], 'field' => $form_state['storage']['edit']['chado_field'], //'required' => , //'allowed values' => empty by default, 'spreadsheet sheet' => $form_state['storage']['edit']['sheet_name'], 'spreadsheet column' => $form_state['storage']['edit']['column_number'], //'exposed' => 'true|false' If exposed, will give a select box first from allowed values if set, second from database if values not set. //'mapping' => array( // 'from' => 'to' // '/from re/' => 'to' //), ); } elseif ($form_state['storage']['edit']['field_type'] == 'constant') { $field = array( 'type' => 'constant', 'title' => $form_state['storage']['edit']['field_title'], 'field' => $form_state['storage']['edit']['chado_field'], //'required' => , //'allowed values' => empty by default, 'constant value' => $form_state['storage']['edit']['constant_value'], //'exposed' => 'true|false' If exposed, will give a select box first from allowed values if set, second from database if values not set. ); } elseif ($form_state['storage']['edit']['field_type'] == 'foreign key') { $field = array( 'type' => 'foreign key', 'title' => $form_state['storage']['edit']['field_title'], 'field' => $form_state['storage']['edit']['chado_field'], 'foreign key' => $form_state['values']['edit-field_foreign_key'], //'required' => , ); } $form_state['storage']['template'][$priority]['table'] = $form_state['storage']['edit']['chado_table']; if ($old_priority != $priority) { $form_state['storage']['template'][$priority]['fields'][] = $field; unset($form_state['storage']['template'][$old_priority]['fields'][$field_index]); } else { $form_state['storage']['template'][$priority]['fields'][$field_index] = $field; } drupal_set_message('Successfully Updated Field'); //reset form unset($form_state['storage']['edit_field']); unset($form_state['storage']['edit']); } } return $form_state; } ////////////////////////////////////////////////////////////////////////////////////// // AHAH Callbacks ////////////////////////////////////////////////////////////////////////////////////// /** * AHAH Function: Replace $form['add_fields'] in tripal_bulk_loader_add_template_field_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_add_field_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); } ////////////////////////////////////////////////////////////////////////////////////// /** * AHAH Function: Replace $form['subform'] in tripal_bulk_loader_add_template_field_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_edit_change_subform_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form_state['ahah_triggered'] = 'change_subform'; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form[$form['subform_formkey']['#value']]; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); } /** * AHAH Function: Replace $form['subform']['extra_options'] in tripal_bulk_loader_add_template_field_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_field_extra_options_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form_state['ahah_triggered'] = 'change_subform'; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form[$form['subform_formkey']['#value']]['extra_options']; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); } /** * AHAH Function: Replace $form['add_fields']['chado'] in tripal_bulk_loader_add_template_field_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_add_chado_column_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form_state['ahah_triggered'] = 'add_chado_column'; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form['add_fields']['chado']; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); } /** * AHAH Function: Replace $form['add_fields'] in tripal_bulk_loader_add_template_base_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_add_field_type_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form_state['ahah_triggered'] = 'add_field_type'; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form['add_fields']; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); } /** * AHAH Function: Replace $form['add_fields']['add-record_name'] in tripal_bulk_loader_add_template_base_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_add_new_record_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form_state['ahah_triggered'] = 'add_new_record'; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form['record_name']; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); } /** * AHAH Function: Replace $form['edit_fields'] in tripal_bulk_loader_edit_template_field_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_edit_field_type_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form_state['ahah_triggered'] = 'edit_field_type'; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form['edit_fields']; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); } /** * AHAH Function: Replace $form['edit_fields']['chado'] in tripal_bulk_loader_edit_template_field_form * * @return * JSON Data printed to the screen */ function tripal_bulk_loader_edit_chado_column_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form_state['ahah_triggered'] = 'edit_chado_column'; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form['edit_fields']['chado']; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); }