Create a new bulk loader template
"; $del_url = url("admin/tripal/tripal_bulk_loader_template/delete"); $output .= "Delete a bulk loader template"; return $output; } /******************************************************************************* * tripal_bulk_loader_admin_template_add */ function tripal_bulk_loader_admin_template_add () { $output = ''; $output .= drupal_get_form('tripal_bulk_loader_create_template_base_form'); return $output; } /** * Implements hook_tripal_bulk_loader_supported_modules * * @return * An array of => describing the modules supported */ function tripal_bulk_loader_tripal_bulk_loader_supported_modules() { return array( 'feature' => 'Feature', 'organism' => 'Organism', 'library' => 'Library', 'analysis' => 'Analysis', ); } function tripal_bulk_loader_tripal_bulk_loader_feature_related_tables () { return array( 'feature' => 'Feature', 'analysis' => 'Analysis', 'element' => 'Element', 'cvterm' => 'CV Terms', 'dbxref' => 'External Database References', 'genotype' => 'Genotypes', 'phenotype' => 'Phenotypes', 'pub' => 'Publications', 'feature_relationship' => 'Relationships between Features', 'synonym' => 'Synonyms', 'featureloc' => 'Feature Locations', 'featurepos' => 'Feature Positions', 'featureprop' => 'Feature Properties', 'featurerange' => 'Feature Ranges', 'library' => 'Library', 'phylonode' => 'Polynode' ); } /******************************************************************************* * tripal_bulk_loader_admin_template_form */ function tripal_bulk_loader_create_template_base_form (&$form_state = NULL) { // Basic Details-------------------------------------------------------------- $form['bulk_loader'] = array( '#type' => 'fieldset', '#title' => t('Step 1: Basic Template Details'), ); $modules = module_invoke_all('tripal_bulk_loader_supported_modules'); $modules[''] = 'Select A Module'; if ($form_state['storage']['base_table']) { $base_table = $form_state['storage']['base_table']; } else { $base_table = ''; } $form['bulk_loader']['chado_module'] = array( '#title' => t('Chado Module'), '#description' => t('Please select the module for which you would like to create an importer'), '#type' => 'select', '#options' => $modules, '#default_value' => $base_table, '#weight' => 0, '#required' => TRUE ); $form['bulk_loader']['template_name'] = array( '#type' => 'textfield', '#title' => t('Template Name'), '#default_value' => $form_state['storage']['template_name'], ); if ($base_table) { // Add Field (Maps to column in spreadsheet)-------------------------------------- $form['add_fields'] = array( '#type' => 'fieldset', '#title' => t('Step 2: Add Fields'), ); $field_type = ($form_state['storage']['field_type'])? $form_state['storage']['field_type'] : 'column'; $form['add_fields']['type'] = array( '#type' => 'radios', '#title' => t('Type of Field'), '#options' => array( 'column' => t('Fields which maps to a Spreadsheet Column'), 'constant' => t('Field which remains Constant throughout the Spreadsheet'), ), '#default_value' => $field_type, ); $form['add_fields']['field_title'] = array( '#type' => 'textfield', '#title' => t('Human-readable Title for Field') ); // Spreadsheet column $form['add_fields']['columns'] = array( '#type' => ($field_type == 'column')? 'fieldset' : 'hidden', '#title' => t('Spreadsheet Column'), '#prefix' => '
', '#suffix' => '
', ); $form['add_fields']['columns']['sheet'] = array( '#type' => 'textfield', '#title' => t('Worksheet'), '#description' => t('Specify the name of the worksheet.'), '#size' => 5, '#default_value' => ($form_state['storage']['sheet_name'])? $form_state['storage']['sheet_name'] : 'Sheet1', ); $form['add_fields']['columns']['column'] = array( '#type' => 'textfield', '#title' => t('Column'), '#description' => t('Specify the column in the spreadsheet that this field maps to where the first column is 1.'), '#size' => 5, '#default_value' => $form_state['storage']['column_number'], ); // Global Value $form['add_fields']['constant'] = array( '#type' => ($field_type == 'constant')? 'fieldset' : 'hidden', '#title' => t('Constant'), '#prefix' => '
', '#suffix' => '
', ); $form['add_fields']['constant']['constant_value'] = array( '#type' => 'textfield', '#title' => t('Constant Value'), '#description' => t('Specify the value you wish this field to have regardless of spreadsheet data.'), '#default_value' => $form_state['storage']['constant_value'] ); // Chado Field $form['add_fields']['chado'] = array( '#type' => 'fieldset', '#title' => t('Chado Field/Column Details'), '#prefix' => '
', '#suffix' => '
', '#description' => t('Specify the Table/Field in chado that this field maps to.'), ); $related_tables = module_invoke_all('tripal_bulk_loader_'.$base_table.'_related_tables'); $table = ($form_state['storage']['chado_table'])? $form_state['storage']['chado_table'] : $base_table; $form['add_fields']['chado']['chado_table'] = array( '#type' => 'select', '#title' => t('Chado Table'), '#options' => $related_tables, '#default_value' => $table, '#ahah' => array( 'path' => 'admin/tripal/tripal_bulk_loader_template/add/chado_column_ahah', 'wrapper' => 'tripal-bulk-loader-chado-column', 'effect' => 'fade' ), ); $table_description = module_invoke_all('chado_'.$table.'_schema'); $chado_fields = array(); foreach($table_description['fields'] as $field_name => $field_array) { $chado_fields[$field_name] = $field_name; } $form['add_fields']['chado']['chado_field'] = array( '#type' => 'select', '#title' => t('Chado Field/Column'), '#options' => $chado_fields ); $form['add_fields']['submit-add_field'] = array( '#type' => 'submit', '#value' => 'Add Field' ); // List Current Fields------------------------------------------------------------ $form['current_fields'] = array( '#type' => 'fieldset', '#title' => t('Step 3: Confirm Fields') ); $form['current_fields']['items'] = array( '#type' => 'item', '#value' => print_r($form_state['storage']['template'],TRUE), '#prefix' => '
',
      '#suffix' => '
', ); // Submit------------------------------------------------------------------------- $form['submit-save'] = array( '#type' => 'submit', '#value' => 'Save Template' ); } else { $form['submit-next_step'] = array( '#type' => 'submit', '#value' => 'Next Step' ); } //end of if base details are set return $form; } /************************************************************************ * tripal_bulk_loader_admin_template_form_validate */ function tripal_bulk_loader_create_template_base_form_validate($form, &$form_state){ if(!$form_state['ahah_submission']) { if ($form_state['values']['op'] == 'Add Field') { if ($form_state['values']['type'] == 'column') { if (!$form_state['values']['column']) { form_set_error('column', 'Column is Required!'); } if (!$form_state['values']['sheet']) { form_set_error('sheet', 'Worksheet Name is Required!'); } } elseif ($form_state['values']['type'] == 'constant') { if (!$form_state['values']['constant_value']) { form_set_error('constant_value', 'Value of Constant is Required!'); } } } elseif ($form_state['values']['op'] == 'Save Template') { if (!$form_state['storage']['template']) { form_set_error('', 'Tempalte must contain at least one field'); } } } } /************************************************************************ * tripal_bulk_loader_admin_template_form_submit */ function tripal_bulk_loader_create_template_base_form_submit($form, &$form_state){ //dpm($form_state, 'form_state: submit'); // AHAH Storage ---------------------------------------------------------- $form_state['rebuild'] = TRUE; $form_state['storage']['base_table'] = $form_state['values']['chado_module']; $form_state['storage']['template_name'] = $form_state['values']['template_name']; $form_state['storage']['field_title'] = $form_state['values']['field_title']; $form_state['storage']['field_type'] = $form_state['values']['type']; $form_state['storage']['sheet_name'] = $form_state['values']['sheet']; $form_state['storage']['column_number'] = $form_state['values']['column']; $form_state['storage']['constant_value'] = $form_state['values']['constant_value']; $form_state['storage']['chado_table'] = $form_state['values']['chado_table']; $form_state['storage']['chado_field'] = $form_state['values']['chado_field']; if (!$form_state['ahah_submission']) { // Add Field to Template---------------------------------------------- if ($form_state['values']['op'] == 'Add Field') { $template = $form_state['storage']['template']; if ($form_state['storage']['field_type'] == 'column') { $template[$form_state['storage']['chado_table']]['field'][] = array( 'type' => 'table field', 'title' => $form_state['storage']['field_title'], 'field' => $form_state['storage']['chado_field'], //'required' => , //'allowed values' => empty by default, 'spreadsheet sheet' => $form_state['storage']['sheet_name'], 'spreadsheet column' => $form_state['storage']['column_number'], //'exposed' => 'true|false' If exposed, will give a select box first from allowed values if set, second from database if values not set. //'mapping' => array( // 'from' => 'to' // '/from re/' => 'to' //), ); } elseif ($form_state['storage']['field_type'] == 'constant') { $template[$form_state['storage']['chado_table']]['field'][] = array( 'type' => 'constant', 'title' => $form_state['storage']['field_title'], 'field' => $form_state['storage']['chado_field'], //'required' => , //'allowed values' => empty by default, 'constant value' => $form_state['storage']['constant_value'], //'exposed' => 'true|false' If exposed, will give a select box first from allowed values if set, second from database if values not set. ); } dpm($template, 'template'); $form_state['storage']['template'] = $template; // Save Template ---------------------------------------------------- } elseif ($form_state['values']['op'] == 'Save Template') { $record = array( 'name' => $form_state['values']['template_name'], 'template_array' => print_r($form_state['storage']['template'],TRUE) ); //Check if template exists $sql = "SELECT count(*) as count FROM tripal_bulk_loader_template WHERE name='%s'"; if (db_result(db_query($sql, $form_state['values']['template_name']))) { // Update Previous drupal_write_record('tripal_bulk_loader_template', $record, array('name')); } else { // Insert New drupal_write_record('tripal_bulk_loader_template', $record); } } } //end of if not ahah submission } function tripal_bulk_loader_chado_column_ahah () { $form_state = array('storage' => NULL, 'submitted' => FALSE); $form_build_id = $_POST['form_build_id']; $form = form_get_cache($form_build_id, $form_state); $args = $form['#parameters']; $form_id = array_shift($args); $form_state['post'] = $form['#post'] = $_POST; // Enable the submit/validate handlers to determine whether AHAH-submittted. $form_state['ahah_submission'] = TRUE; $form['#programmed'] = $form['#redirect'] = FALSE; drupal_process_form($form_id, $form, $form_state); $form = drupal_rebuild_form($form_id, $form_state, $args, $form_build_id); $form_element = $form['add_fields']['chado']; // Remove the wrapper so we don't double it up. unset($form_element['#prefix'], $form_element['#suffix']); $output = theme('status_messages'); $output .= drupal_render($form_element); // Final rendering callback. print drupal_json(array('status' => TRUE, 'data' => $output)); exit(); }