field['field_name']; $matches = array(); preg_match('/(.*?)__(\d+)/', $field_name, $matches); // If the field name is not properly formatted then we can't tell what // table and type this is. So just return. if (count($matches) != 3) { return $widget; } $table_name = $matches[1]; $cv_id = $matches[2]; // Get the FK column that links to the base table. $chado_table = $this->field['settings']['chado_table']; $base_table = $this->field['settings']['base_table']; $schema = chado_get_schema($chado_table); $pkey = $schema['primary key'][0]; $fkeys = array_values($schema['foreign keys'][$base_table]['columns']); $fkey = $fkeys[0]; // Get the field defaults. $record_id = ''; $fkey_value = $element['#entity']->chado_record_id; $cvterm_name = ''; $cvterm_id = ''; $pub_id = ''; $uname = ''; $is_not = ''; $cvterm = NULL; // If the field already has a value then it will come through the $items // array. This happens when editing an existing record. if (array_key_exists($delta, $items)) { $record_id = $items[$delta]['value']; $cvterm_name = $items[$delta]['cvterm__name']; $pub_id =$items[$delta]['chado-' . $table_name . '__pub_id']; if ($pub_id && $pub_id != 1) { $pub = chado_generate_var('pub', array('pub_id' => $pub_id)); $uname = $pub->uniquename; } $is_not = $items[$delta]['chado-' . $table_name . '__is_not']; $cvterm_id = $items[$delta]['chado-' . $table_name . '__cvterm_id']; } // Check $form_state['values'] to see if an AJAX call set the values. if (array_key_exists('values', $form_state) and array_key_exists($delta, $form_state['values'])) { // See example in chado_linker_contact.inc // $record_id = tripal_chado_get_field_form_values($table_name, $form_state, $delta, $table_name); // $fkey_value = tripal_chado_get_field_form_values($table_name, $form_state, $delta, $table_name . '__' . $fkey); // $is_not = tripal_chado_get_field_form_values($table_name, $form_state, $delta, $table_name . '__is_not'); // $cvterm_name = tripal_chado_get_field_form_values($table_name, $form_state, $delta, $table_name . '--cvterm__name'); } if ($cvterm_name) { $cvterm = chado_generate_var('cvterm', array('cv_id' => $cv_id, 'name' => $cvterm_name)); } $schema = chado_get_schema('cvterm'); $options = tripal_get_cv_select_options(); $widget['#table_name'] = $chado_table; $widget['#fkey_field'] = $fkey; $widget['#theme'] = 'chado_linker__cvterm_widget'; $widget['#prefix'] = ""; $widget['#suffix'] = ""; $widget['value'] = array( '#type' => 'value', '#value' => key_exists($delta, $items) ? $items[$delta]['value'] : '', ); $widget['chado-' . $table_name . '__' . $pkey] = array( '#type' => 'value', '#default_value' => $record_id, ); $widget['cv__cv_id'] = array( '#type' => 'value', '#default_value' => $cv_id, ); $widget['chado-' . $table_name . '__cvterm_id'] = array( '#type' => 'value', '#default_value' => $cvterm ? $cvterm->cvterm_id : '', ); $widget['chado-' . $table_name . '__' . $fkey] = array( '#type' => 'value', '#default_value' => $fkey_value, ); $widget['cvterm__name'] = array( '#type' => 'textfield', '#title' => t('Term Name'), '#default_value' => $cvterm_name, '#required' => $element['#required'], '#maxlength' => array_key_exists('length', $schema['fields']['name']) ? $schema['fields']['name']['length'] : 255, '#autocomplete_path' => 'admin/tripal/storage/chado/auto_name/cvterm/' . $cv_id, '#size' => 30 ); $widget['pub'] = array( '#type' => 'textfield', '#title' => t('Publication'), '#default_value' => $uname, '#autocomplete_path' => 'admin/tripal/storage/chado/auto_name/pub', '#ajax' => array( 'callback' => "chado_linker__pub_widget_form_ajax_callback", 'wrapper' => "$table_name-$delta", 'effect' => 'fade', 'method' => 'replace' ), '#maxlength' => 100000, ); $widget['chado-' . $table_name . '__pub_id'] = array( '#type' => 'value', '#default_value' => $pub_id ? $pub_id : 1, ); $widget['chado-' . $table_name . '__is_not'] = array( '#type' => 'checkbox', '#title' => t('Is Not'), '#default_value' => $is_not, '#required' => $element['#required'], ); $widget['cvterm__definition'] = array( '#type' => 'item', '#markup' => '', ); } /** * Performs validation of the widgetForm. * * Use this validate to ensure that form values are entered correctly. Note * this is different from the validate() function which ensures that the * field data meets expectations. * * @param $form * @param $form_state */ public function validate($form, &$form_state, $entity_type, $entity, $langcode, $delta) { } /** * * @see TripalFieldWidget::submit() */ public function submit($form, &$form_state, $entity_type, $entity, $langcode, $delta) { $field_name = $this->field['field_name']; $table_name = $this->field['settings']['chado_table']; $schema = chado_get_schema($table_name); $pkey = $schema['primary key'][0]; $base_table = $this->field['settings']['base_table']; $lfkey_field = key($schema['foreign keys'][$base_table]['columns']); $rfkey_field = $schema['foreign keys'][$base_table]['columns'][$lfkey_field]; // If the form ID is field_ui_field_edit_form, then the user is editing the // field's values in the manage fields form of Drupal. We don't want // to validate it as if it were being used in a data entry form. if ($form_state['build_info']['form_id'] =='field_ui_field_edit_form') { return; } // If the user provided a cv_id and a name then we want to set the // foreign key value to be the chado_record_idd $cvterm_name = isset($form_state['values'][$field_name][$langcode][$delta]['cvterm__name']) ? $form_state['values'][$field_name][$langcode][$delta]['cvterm__name'] : ''; if (!$cvterm_name) { $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__cvterm_id'] = ''; $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__' . $lfkey_field] = ''; $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__pub_id'] = ''; } } }