');
$breadcrumb[] = l('Administration', 'admin');
$breadcrumb[] = l('Tripal', 'admin/tripal');
$breadcrumb[] = l('Chado', 'admin/tripal/legacy');
$breadcrumb[] = l('Analysis', 'admin/tripal/legacy/tripal_analysis');
drupal_set_breadcrumb($breadcrumb);
// Add the view
$view = views_embed_view('tripal_analysis_admin_analyses', 'default');
if (isset($view)) {
$output .= $view;
}
else {
$output .= 'The Analysis module uses primarily views to provide an '
. 'administrative interface. Currently one or more views needed for this '
. 'administrative interface are disabled. Click each of the following links to '
. 'enable the pertinent views:
';
$output .= '';
$output .= '- ' . l('Analysis View', 'admin/tripal/legacy/tripal_analysis/views/analyses/enable') . '
';
$output .= '
';
}
return $output;
}
/**
* Administration page callbacks for the Tripal Analysis module
*
* @return
* A form API array describing an administrative form
*
* @ingroup tripal_legacy_analysis
*/
function tripal_analysis_admin() {
// Create a new administrative form. We'll add main functions to the form
// first (Sync, Reindex, Clean, Taxonify). Thereafter, any sub-module that
// has a setting will be added.
$form = [];
// If your module is using the Chado Node: Title & Path API to allow custom titles
// for your node type then you need to add the configuration form for this functionality.
$details = [
'module' => 'tripal_analysis',
// the name of the MODULE implementing the content type
'content_type' => 'chado_analysis',
// the name of the content type
// An array of options to use under "Page Titles"
// the key should be the token and the value should be the human-readable option
'options' => [
'[analysis.name]' => 'Analysis Name Only',
// there should always be one options matching the unique constraint.
'[analysis.name] ([analysis.sourcename]) [analysis.program] version [analysis.programversion]' => 'Unique Contraint: Includes the name, source and program name/version',
],
// the token indicating the unique constraint in the options array
'unique_option' => '[analysis.name] ([analysis.sourcename]) [analysis.program] version [analysis.programversion]',
];
// This call adds the configuration form to your current form
// This sub-form handles it's own validation & submit
chado_add_admin_form_set_title($form, $form_state, $details);
// URL ALIAS
$details = [
'module' => 'tripal_analysis',
'content_type' => 'chado_analysis',
'options' => [
'/analysis/[analysis.analysis_id]' => 'Analysis ID',
'/analysis/[analysis.program]/[analysis.programversion]/[analysis.sourcename]' => 'Unique Contraint: Includes the program name & version as well as the source name',
],
];
// This call adds the configuration form to your current form
// This sub-form handles it's own validation & submit
chado_add_admin_form_set_url($form, $form_state, $details);
return system_settings_form($form);
}
/**
* Validate the administrative form
*
* @todo Stephen: Why is validate used rather then submit?
*
* @param $form
* The form API array of the form to be validated
*
* @form_state
* The user submitted values
*
* @ingroup tripal_legacy_analysis
*/
function tripal_analysis_admin_validate($form, &$form_state) {
}