library;
$options = ['return_array' => 1];
$library = chado_expand_var($library, 'table', 'library_cvterm', $options);
$terms = $library->library_cvterm;
// order the terms by CV
$s_terms = [];
if ($terms) {
foreach ($terms as $term) {
$s_terms[$term->cvterm_id->cv_id->name][] = $term;
}
}
if (count($s_terms) > 0) { ?>
The
following terms have been associated with
this library->type_id->name ?>:
$terms) {
// the $headers array is an array of fields to use as the colum headers.
// additional documentation can be found here
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$headers = ['Term', 'Definition'];
// the $rows array contains an array of rows where each row is an array
// of values for each column of the table in that row. Additional documentation
// can be found here:
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$rows = [];
foreach ($terms as $term) {
$accession = $term->cvterm_id->dbxref_id->accession;
if (is_numeric($term->cvterm_id->dbxref_id->accession)) {
$accession = $term->cvterm_id->dbxref_id->db_id->name . ":" . $term->cvterm_id->dbxref_id->accession;
}
if ($term->cvterm_id->dbxref_id->db_id->urlprefix) {
$accession = l($accession, $term->cvterm_id->dbxref_id->db_id->urlprefix . $accession, ['attributes' => ["target" => '_blank']]);
}
$rows[] = [
$accession,
$term->cvterm_id->name,
];
}
// the $table array contains the headers and rows array as well as other
// options for controlling the display of the table. Additional
// documentation can be found here:
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$table = [
'header' => $headers,
'rows' => $rows,
'attributes' => [
'id' => "tripal_library-table-terms-$i",
'class' => 'tripal-data-table',
],
'sticky' => FALSE,
'caption' => 'Vocabulary: ' . ucwords(preg_replace('/_/', ' ', $cv)) . '',
'colgroups' => [],
'empty' => '',
];
// once we have our table array structure defined, we call Drupal's theme_table()
// function to generate the table.
print theme_table($table);
$i++;
}
} ?>