; The file should be formatted this way :
; file:line:warning-type
; where warning-type is one of security, style, sql, i18n, comment, etc.

; All <?php should be closed with a ?> in theme template files
tripal_views_integration_fields_form.tpl.php:48:style
tripal_views_data_export_download_form.tpl.php:8:style

; All variables are set through the code and thus don't need to be filtered
tripal_views_integration.inc:734:security

; SQL queries the chado database which does not use the drupal prefixing functionality
; therefore, curly brackets ({}) are not appropriate.
views/handlers/views_handler_filter_chado_select_cvterm_name.inc:53:sql
views/handlers/views_handler_filter_chado_select_cvterm_name.inc:61:sql
views/handlers/views_handler_field_dbxref_accession_link.inc:31:sql

; SQL queries the pg_tables table to check if a table exists in chado; drupal
; prefixing is not appropriate
views/handlers/views_handler_field_chado_rel_by_type.inc:22:sql