/* For load_gff3.pl */ insert into organism (abbreviation, genus, species, common_name) values ('H.sapiens', 'Homo','sapiens','human'); insert into organism (abbreviation, genus, species, common_name) values ('D.melanogaster', 'Drosophila','melanogaster','fruitfly'); insert into organism (abbreviation, genus, species, common_name) values ('M.musculus', 'Mus','musculus','mouse'); insert into organism (abbreviation, genus, species, common_name) values ('A.gambiae', 'Anopheles','gambiae','mosquito'); insert into organism (abbreviation, genus, species, common_name) values ('R.norvegicus', 'Rattus','norvegicus','rat'); insert into organism (abbreviation, genus, species, common_name) values ('A.thaliana', 'Arabidopsis','thaliana','mouse-ear cress'); insert into organism (abbreviation, genus, species, common_name) values ('C.elegans', 'Caenorhabditis','elegans','worm'); insert into organism (abbreviation, genus, species, common_name) values ('D.rerio', 'Danio','rerio','zebrafish'); insert into organism (abbreviation, genus, species, common_name) values ('O.sativa', 'Oryza','sativa','rice'); insert into organism (abbreviation, genus, species, common_name) values ('S.cerevisiae', 'Saccharomyces','cerevisiae','yeast'); insert into organism (abbreviation, genus, species, common_name) values ('X.laevis', 'Xenopus','laevis','frog'); insert into organism (abbreviation, genus, species,common_name) values ('D.discoideum','Dictyostelium','discoideum','dicty'); insert into contact (name) values ('Affymetrix'); insert into contact (name,description) values ('null','null'); insert into cv (name) values ('null'); insert into cv (name,definition) values ('local','Locally created terms'); insert into cv (name,definition) values ('Statistical Terms','Locally created terms for statistics'); insert into db (name, description) values ('null','a fake database for local items'); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'local:null'); insert into cvterm (name,cv_id,dbxref_id) values ('null',(select cv_id from cv where name = 'null'),(select dbxref_id from dbxref where accession='local:null')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'local:computer file'); insert into cvterm (name,cv_id,dbxref_id) values ('computer file', (select cv_id from cv where name = 'null'),(select dbxref_id from dbxref where accession='local:computer file')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'local:glass'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('glass','glass array',(select cv_id from cv where name = 'local'),(select dbxref_id from dbxref where accession='local:glass')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'local:photochemical_oligo'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('photochemical_oligo','in-situ photochemically synthesized oligoes',(select cv_id from cv where name = 'local'),(select dbxref_id from dbxref where accession='local:photochemical_oligo')); insert into pub (miniref,uniquename,type_id) values ('null','null',(select cvterm_id from cvterm where name = 'null')); insert into db (name, description) values ('GFF_source', 'A collection of sources (ie, column 2) from GFF files'); insert into db (name) values ('ATCC'); insert into db (name) values ('refseq'); insert into db (name) values ('genbank'); insert into db (name) values ('EMBL'); insert into db (name) values ('TIGR'); insert into db (name) values ('ucsc'); insert into db (name) values ('ucla'); insert into db (name) values ('SGD'); insert into db (name) values ('PFAM'); insert into db (name) values ('SUPERFAMILY'); insert into db (name) values ('PROFILE'); insert into db (name) values ('PRODOM'); insert into db (name) values ('PRINTS'); insert into db (name) values ('SMART'); insert into db (name) values ('TIGRFAMs'); insert into db (name) values ('PIR'); insert into db (name) values ('Affymetrix_U133'); insert into db (name) values ('Affymetrix_U133PLUS'); insert into db (name) values ('Affymetrix_U95'); insert into db (name) values ('LocusLink'); insert into db (name) values ('RefSeq_protein'); insert into db (name) values ('GenBank_protein'); insert into db (name) values ('OMIM'); insert into db (name) values ('Swiss'); insert into db (name) values ('RefSNP'); insert into db (name) values ('TSC'); --insert into db (name, contact_id, description, urlprefix) values ('affy:U133',(select contact_id from contact where name = 'null'),'Affymetrix U133','http://https://www.affymetrix.com/analysis/netaffx/fullrecord.affx?pk=HG-U133_PLUS_2:'); --insert into db (name, contact_id, description, urlprefix) values ('affy:U95',(select contact_id from contact where name = 'null'),'Affymetrix U95','http://https://www.affymetrix.com/analysis/netaffx/fullrecord.affx?pk=HG-U95AV2:'); insert into db (name, description) values ('GR','Gramene'); insert into db (name, description, urlprefix) values ('uniprot','UniProt/TrEMBL','http://us.expasy.org/cgi-bin/niceprot.pl?'); insert into db (name, description, urlprefix) values ('refseq:mrna','RefSeq mRNA','http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=nucleotide&dopt=GenBank&term='); insert into db (name, description, urlprefix) values ('refseq:protein','RefSeq Protein','http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=protein&dopt=GenBank&term='); insert into db (name, description, urlprefix) values ('unigene','Unigene','http://www.ncbi.nih.gov/entrez/query.fcgi?db=unigene&cmd=search&term='); insert into db (name, description, urlprefix) values ('omim','OMIM','http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id='); insert into db (name, description, urlprefix) values ('locuslink','LocusLink','http://www.ncbi.nlm.nih.gov/LocusLink/LocRpt.cgi?l='); insert into db (name, description, urlprefix) values ('genbank:mrna','GenBank mRNA','http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=nucleotide&dopt=GenBank&term='); insert into db (name, description, urlprefix) values ('genbank:protein','GenBank Protein','http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=protein&dopt=GenBank&term='); insert into db (name, description, urlprefix) values ('swissprot:display','SwissProt','http://us.expasy.org/cgi-bin/niceprot.pl?'); insert into db (name, description, urlprefix) values ('pfam','Pfam','http://www.sanger.ac.uk/cgi-bin/Pfam/dql.pl?query='); insert into analysis (name,program,programversion) values ('dabg' ,'dabg' ,'dabg' ); insert into analysis (name,program,programversion) values ('dchip','dchip','dchip'); insert into analysis (name,program,programversion) values ('gcrma','gcrma','gcrma'); insert into analysis (name,program,programversion) values ('mas5' ,'mas5' ,'mas5' ); insert into analysis (name,program,programversion) values ('mpam' ,'mpam' ,'mpam' ); insert into analysis (name,program,programversion) values ('plier','plier','plier'); insert into analysis (name,program,programversion) values ('rma' ,'rma' ,'rma' ); insert into analysis (name,program,programversion) values ('sea' ,'sea' ,'sea' ); insert into analysis (name,program,programversion) values ('vsn' ,'vsn' ,'vsn' ); insert into arraydesign (name,manufacturer_id,platformtype_id) values ('unknown' , (select contact_id from contact where name = 'null'),(select cvterm_id from cvterm where name = 'null')); insert into arraydesign (name,manufacturer_id,platformtype_id) values ('virtual array' , (select contact_id from contact where name = 'null'),(select cvterm_id from cvterm where name = 'null')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U133_Plus_2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U133A' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U133A_2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U133B' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U95Av2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U95B' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U95C' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U95D' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HG-U95E' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HuExon1' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_HuGeneFL' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_U74Av2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_MG-U74Av2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_MG-U74Bv2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_MG-U74Cv2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_RG-U34A' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_RG-U34B' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_RG-U34C' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_RT-U34' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_RN-U34' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_YG-S98' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Yeast_2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_RAE230A' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_RAE230B' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Rat230_2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_MOE430A' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_MOE430B' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mouse430_2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mouse430A_2' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_ATH1-121501' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mapping100K_Hind240' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mapping100K_Xba240' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mapping10K_Xba131' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mapping10K_Xba142' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mapping500K_NspI' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into arraydesign (name,manufacturer_id,platformtype_id,substratetype_id) values ('Affymetrix_Mapping500K_StyI' , (select contact_id from contact where name = 'Affymetrix'),(select cvterm_id from cvterm where name = 'photochemical_oligo'),(select cvterm_id from cvterm where name = 'glass')); insert into cv (name) values ('developmental stages'); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'developmental stages:fetus'); insert into cvterm (name,cv_id,dbxref_id) values ('fetus', (select cv_id from cv where name = 'local'),(select dbxref_id from dbxref where accession='developmental stages:fetus')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'developmental stages:neonate'); insert into cvterm (name,cv_id,dbxref_id) values ('neonate', (select cv_id from cv where name = 'developmental stages'), (select dbxref_id from dbxref where accession='developmental stages:neonate')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'developmental stages:child'); insert into cvterm (name,cv_id,dbxref_id) values ('child', (select cv_id from cv where name = 'developmental stages'), (select dbxref_id from dbxref where accession='developmental stages:child')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'developmental stages:adult_young'); insert into cvterm (name,cv_id,dbxref_id) values ('adult_young',(select cv_id from cv where name = 'developmental stages'),(select dbxref_id from dbxref where accession='developmental stages:adult_young')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'developmental stages:adult'); insert into cvterm (name,cv_id,dbxref_id) values ('adult', (select cv_id from cv where name = 'developmental stages'),(select dbxref_id from dbxref where accession='developmental stages:adult')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'developmental stages:adult_old'); insert into cvterm (name,cv_id,dbxref_id) values ('adult_old', (select cv_id from cv where name = 'developmental stages'), (select dbxref_id from dbxref where accession='developmental stages:adult_old')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'local:survival_time'); insert into cvterm (name,cv_id,dbxref_id) values ('survival_time',(select cv_id from cv where name = 'local'),(select dbxref_id from dbxref where accession='local:survival_time')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:n'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('n','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:n')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:minimum'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('minimum','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:minimum')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:maximum'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('maximum','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:maximum')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:modality'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('modality','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:modality')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:modality p'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('modality p','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:modality p')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:mean'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('mean','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:mean')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:median'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('median','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:median')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:mode'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('mode','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:mode')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:quartile 1'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('quartile 1','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:quartile 1')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:quartile 3'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('quartile 3','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:quartile 3')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:skewness'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('skewness','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:skewness')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:kurtosis'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('kurtosis','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:kurtosis')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:chi square p'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('chi square p','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:chi square p')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:standard deviation'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('standard deviation','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:standard deviation')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:expectation maximization gaussian mean'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('expectation maximization gaussian mean','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:expectation maximization gaussian mean')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:expectation maximization p'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('expectation maximization p','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:expectation maximization p')); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'Statistical Terms:histogram'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('histogram','sensu statistica', (select cv_id from cv where name = 'Statistical Terms'),(select dbxref_id from dbxref where accession='Statistical Terms:histogram')); insert into cv (name,definition) values ('autocreated','Terms that are automatically inserted by loading software'); insert into cv (name,definition) values ('chado_properties','Terms that are used in the chadoprop table to describe the state of the database'); insert into dbxref (db_id,accession) values ((select db_id from db where name='null'), 'chado_properties:version'); insert into cvterm (name,definition,cv_id,dbxref_id) values ('version','Chado schema version',(select cv_id from cv where name = 'chado_properties'),(select dbxref_id from dbxref where accession='chado_properties:version')); --this table will probably end up in general.sql CREATE TABLE public.materialized_view ( materialized_view_id SERIAL, last_update TIMESTAMP, refresh_time INT, name VARCHAR(64) UNIQUE, mv_schema VARCHAR(64), mv_table VARCHAR(128), mv_specs TEXT, indexed TEXT, query TEXT, special_index TEXT );