$base_table))->fetchField(); if (!$bundle_id) { continue; } $bundle_name = 'bio_data_'.$bundle_id; // Find an entity from the above bundle. // @todo find a way to create a fake entity for use here. $entity_id = db_query('SELECT id FROM tripal_entity WHERE bundle=:bundle LIMIT 1', array(':bundle' => $bundle_name))->fetchField(); // set variables to guide testing. $expect = [ 'has_rank' => TRUE, 'has_value' => FALSE, 'subject_key' => 'subject_id', 'object_key' => 'object_id', 'base_table' => $base_table, 'relationship_table' => $base_table.'_relationship' ]; if ($base_table == 'organism') { $expect['has_rank'] = FALSE; } if ($base_table == 'stock') { $expect['has_value'] = TRUE; } if ($base_table == 'project') { $expect['subject_key'] = 'subject_project_id'; $expect['object_key'] = 'object_project_id'; } $data[] = [$bundle_name, $field_name, $widget_name, $entity_id, $expect]; } return $data; } /** * Test that we can initialize the widget properly. * * @dataProvider provideEntities() * * @group widget * @group sbo__relationship */ public function testWidgetClassInitialization($bundle_name, $field_name, $widget_name, $entity_id, $expect) { // Load the entity. $entity = entity_load('TripalEntity', [$entity_id]); $entity = $entity[$entity_id]; // Initialize the widget class via the TripalFieldTestHelper class. $machine_names = array( 'field_name' => $field_name, 'widget_name' => $widget_name, ); $field_info = field_info_field($field_name); $instance_info = field_info_instance('TripalEntity', $field_name, $bundle_name); $helper = new \TripalFieldTestHelper($bundle_name, $machine_names, $entity, $field_info, $instance_info); $widget_class = $helper->getInitializedClass(); // Check we have the variables we initialized. $this->assertNotEmpty($helper->bundle, "Could not load the bundle."); $this->assertNotEmpty($helper->getFieldInfo(), "Could not lookup the field information."); $this->assertNotEmpty($helper->getInstanceInfo(), "Could not lookup the instance information."); $this->assertNotEmpty($widget_class, "Couldn't create a widget class instance."); $this->assertNotEmpty($entity, "Couldn't load an entity."); // Check a little deeper... $this->assertEquals($helper->instance_info['settings']['chado_table'], $expect['relationship_table'], "Instance settings were not initialized fully."); } /** * Test the widget Form. * * @dataProvider provideEntities() * * @group widget * @group sbo__relationship */ public function testWidgetForm($bundle_name, $field_name, $widget_name, $entity_id, $expect) { // Load the entity. $entity = entity_load('TripalEntity', [$entity_id]); $entity = $entity[$entity_id]; // Initialize the widget class via the TripalFieldTestHelper class. $machine_names = array( 'field_name' => $field_name, 'widget_name' => $widget_name, ); $field_info = field_info_field($field_name); $instance_info = field_info_instance('TripalEntity', $field_name, $bundle_name); $helper = new \TripalFieldTestHelper($bundle_name, $machine_names, $entity, $field_info, $instance_info); $widget_class = $helper->getInitializedClass(); $base_table = $entity->chado_table; // Stub out a fake objects. $delta = 1; $langcode = LANGUAGE_NONE; $widget = $helper->mockElement($delta, $langcode); $form = $helper->mockForm($delta, $langcode); $form_state = $helper->mockFormState($delta, $langcode); $element = $helper->mockElement($delta, $langcode); $items = [ 'value' => '', 'chado-'.$base_table.'_relationship__organism_relationship_id' => '', 'chado-'.$base_table.'_relationship__subject_id' => '', 'chado-'.$base_table.'_relationship__object_id' => '', 'chado-'.$base_table.'_relationship__type_id' => '', 'object_name' => '', 'subject_name' => '', 'type_name' => '', ]; // Execute the form method. $widget_class->form($widget, $form, $form_state, $langcode, $items, $delta, $element); // Check the resulting for array $this->assertArrayHasKey('subject_name', $widget, "The form for $bundle_name($base_table) does not have a subject element."); $this->assertArrayHasKey('type_name', $widget, "The form for $bundle_name($base_table) does not have a type element."); $this->assertArrayHasKey('object_name', $widget, "The form for $bundle_name($base_table) does not have a object element."); // Check the subject/object keys were correctly determined. $this->assertEquals($expect['subject_key'], $widget['#subject_id_key'], "The form didn't determine the subject key correctly."); $this->assertEquals($expect['object_key'], $widget['#object_id_key'], "The form didn't determine the object key correctly."); } /** * DataProvider: Provides datasets to validate. */ public function provideThings2Validate() { $data = []; foreach (['organism', 'stock', 'project'] as $base_table) { $base_table = $base_table; $field_name = 'sbo__relationship'; $widget_name = 'sbo__relationship_widget'; // find a bundle which stores it's data in the given base table. // This will work on Travis since Tripal creates matching bundles by default. // @todo ideally we would create a fake bundle here. $bundle_id = db_query(" SELECT bundle_id FROM chado_bundle b LEFT JOIN tripal_entity e ON e.bundle='bio_data_'||b.bundle_id WHERE data_table=:table AND id IS NOT NULL LIMIT 1", array(':table' => $base_table))->fetchField(); if (!$bundle_id) { continue; } $bundle_name = 'bio_data_'.$bundle_id; // set variables to guide testing. $expect = [ 'has_rank' => TRUE, 'has_value' => FALSE, 'subject_key' => 'subject_id', 'object_key' => 'object_id', 'base_table' => $base_table, 'relationship_table' => $base_table.'_relationship', ]; if ($base_table == 'organism') { $expect['has_rank'] = FALSE; } if ($base_table == 'stock') { $expect['has_value'] = TRUE; } if ($base_table == 'project') { $expect['subject_key'] = 'subject_project_id'; $expect['object_key'] = 'object_project_id'; } // Create 5 fake records and publish them. $records = factory('chado.'.$base_table, 5)->create(); $this->publish($base_table); $cvterm = factory('chado.cvterm')->create(); // Find an entity from the above bundle. $ids = db_query('SELECT id FROM {tripal_entity} WHERE bundle=:bundle LIMIT 2', array(':bundle' => $bundle_name))->fetchCol(); $entities = entity_load('TripalEntity', $ids); $entity = array_pop($entities); $entity2 = array_pop($entities); // Now Build our test cases for this base table. foreach (['user_create', 'existing', 'no_subject', 'no_object', 'no_type'] as $case) { $expect['test_case'] = $case; // First assume "existing" (later we will modify based on case). $values = [ 'subject_name' => $entity2->chado_record->name, 'type_name' => $cvterm->name, 'vocabulary' => $cvterm->cv_id, 'object_name' => $entity->chado_record->name, // Both the form and load set the chado values // so we will set them here as well. 'chado-'.$base_table.'_relationship__'.$expect['subject_key'] => $entity2->chado_record->{$base_table.'_id'}, 'chado-'.$base_table.'_relationship__type_id' => $cvterm->cvterm_id, 'chado-'.$base_table.'_relationship__'.$expect['object_key'] => $entity->chado_record->{$base_table.'_id'}, ]; if ($base_table == 'organism') { $values['subject_name'] = $entity2->chado_record->species; $values['object_name'] = $entity->chado_record->species; } $expect['num_errors'] = 0; // Now modify based on the case. switch ($case) { case 'user_create': $values[ 'chado-'.$base_table.'_relationship__'.$expect['subject_key'] ] = NULL; $values[ 'chado-'.$base_table.'_relationship__type_id' ] = NULL; $values[ 'chado-'.$base_table.'_relationship__'.$expect['object_key'] ] = NULL; break; case 'no_subject': $values['subject_name'] = ''; $values[ 'chado-'.$base_table.'_relationship__'.$expect['subject_key'] ] = NULL; $expect['num_errors'] = 1; break; case 'no_object': $values['object_name'] = ''; $values[ 'chado-'.$base_table.'_relationship__'.$expect['object_key'] ] = NULL; $expect['num_errors'] = 1; break; case 'no_type': $values['type_name'] = ''; $values['vocabulary'] = NULL; $values[ 'chado-'.$base_table.'_relationship__type_id' ] = NULL; $expect['num_errors'] = 1; break; } $data[] = [ [ 'field_name' => $field_name, 'widget_name' => $widget_name, 'bundle_id' => $bundle_id, 'bundle_name' => $bundle_name, ], $entity, $values, $expect, ]; } } return $data; } /** * Test sbo__relationship_widget->validate(). * * @dataProvider provideThings2Validate() * * @group lacey-wip * @group widget * @group sbo__relationship */ public function testWidgetValidate($info, $entity, $initial_values, $expect) { $base_table = $entity->chado_table; // Initialize the widget class via the TripalFieldTestHelper class. $machine_names = array( 'field_name' => $info['field_name'], 'widget_name' => $info['widget_name'], ); $field_info = field_info_field($info['field_name']); $instance_info = field_info_instance('TripalEntity', $info['field_name'], $info['bundle_name']); $helper = new \TripalFieldTestHelper($info['bundle_name'], $machine_names, $entity, $field_info, $instance_info); $widget_class = $helper->getInitializedClass(); // Mock objects. $field_name = $info['field_name']; $delta = 1; $langcode = LANGUAGE_NONE; $widget = $helper->mockElement($delta, $langcode); $form = $helper->mockForm($delta, $langcode); $form_state = $helper->mockFormState($delta, $langcode, $initial_values); $element = $helper->mockElement($delta, $langcode); $widget_class->validate($element, $form, $form_state, $langcode, $delta); // @debug print_r($form_state['values'][$field_name][$langcode][$delta]); // Ensure the chado-table__column entries are there. $this->assertArrayHasKey( 'chado-'.$base_table.'_relationship__'.$expect['subject_key'], $form_state['values'][$field_name][$langcode][$delta], 'Failed to find the subject_id in the processed values (Base: '.$base_table.'). This implies the validate function was not able to validate the subject.' ); $this->assertArrayHasKey( 'chado-'.$base_table.'_relationship__'.$expect['object_key'], $form_state['values'][$field_name][$langcode][$delta], 'Failed to find the object_id in the processed values (Base: '.$base_table.'). This implies the validate function was not able to validate the object.' ); $this->assertArrayHasKey( 'chado-'.$base_table.'_relationship__type_id', $form_state['values'][$field_name][$langcode][$delta], 'Failed to find the type_id in the processed values (Base: '.$base_table.'). This implies the validate function was not able to validate the type.' ); // Check for errors. $errors = form_get_errors(); // @debug print "Errors: " . print_r($errors, TRUE)."\n"; if ($expect['num_errors'] === 0) { $this->assertEmpty($errors, "There should be no form errors for the following initial values: ".print_r($initial_values,TRUE)." But these were registered: ".print_r($errors, TRUE)); } else { $this->assertEquals($expect['num_errors'], sizeof($errors), "The number of errors didn't match what we expected for the following initial values: ".print_r($initial_values,TRUE)." Here are the errors: ".print_r($errors, TRUE)); } // Clean up after ourselves by removing any errors we logged. form_clear_error(); } }