1, ); return $ret; } /******************************************************************************* * Implementation of hook_uninstall() */ function tripal_cv_uninstall(){ // remove the materialized view $mview = tripal_mviews_get_mview_id('cv_root_mview'); if($mview){ tripal_mviews_action('delete',$mview); } drupal_uninstall_schema('tripal_cv'); } /******************************************************************************* * Implementation of hook_requirements(). Make sure 'Tripal Core' is enabled * before installation */ function tripal_cv_requirements($phase) { $requirements = array(); if ($phase == 'install') { if (!function_exists('tripal_create_moddir')) { $requirements ['tripal_cv'] = array( 'title' => "tripal_cv", 'value' => "Required modules must be installed first before Tripal CV module can be installed", 'severity' => REQUIREMENT_ERROR, ); } } return $requirements; } /************************************************************************ * Implementation of hook_schema(). */ function tripal_cv_schema() { $schema = tripal_cv_get_schemas(); return $schema; } /************************************************************************ * This function simply defines all tables needed for the module to work * correctly. By putting the table definitions in a separate function we * can easily provide the entire list for hook_install or individual * tables for an update. */ function tripal_cv_get_schemas (){ $schema = array(); $schema['tripal_cv_obo'] = array( 'fields' => array( 'obo_id' => array('type' => 'serial', 'unsigned' => TRUE, 'not null' => TRUE), 'name' => array('type' => 'varchar','length' => 255), 'path' => array('type' => 'varchar','length' => 1024), ), 'indexes' => array( 'obo_id' => array('obo_id'), ), 'primary key' => array('obo_id'), ); return $schema; } /************************************************************************ * Add's defaults to the tripal_cv_obo table */ function tripal_cv_add_obo_defaults(){ // insert commonly used ontologies into the tables $isql = "INSERT INTO tripal_cv_obo (name,path) VALUES ('%s','%s')"; db_query($isql,'Chado Feature Properties',drupal_get_path('module','tripal_cv').'/feature_property.obo'); db_query($isql,'Relationship Ontology','http://www.obofoundry.org/ro/ro.obo'); db_query($isql,'Sequence Ontology','http://song.cvs.sourceforge.net/*checkout*/song/ontology/so.obo'); db_query($isql,'Gene Ontology','http://www.geneontology.org/ontology/gene_ontology.obo'); db_query($isql,'Cell Ontology','http://obo.cvs.sourceforge.net/obo/obo/ontology/anatomy/cell_type/cell.obo?rev=HEAD'); db_query($isql,'Plant Structure Ontology','http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/OBO_format/po_anatomy.obo?view=co'); db_query($isql,'Plant Growth and Development Stages Ontology','http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/ontology/OBO_format/po_temporal.obo?view=co'); }