'', 'chado_column' => '', 'base_table' => '', ); // Set this to the name of the storage backend that by default will support // this field. public static $default_storage = 'field_chado_storage'; /** * @see TripalField::formatterView() */ public function formatterView(&$element, $entity_type, $entity, $langcode, $items, $display) { // This field should never be viewed. It's to help add new cvterms // when editing an entity. So return nothing. return ''; } /** * @see TripalField::widgetForm() */ public function widgetForm(&$widget, &$form, &$form_state, $langcode, $items, $delta, $element) { parent::widgetForm($widget, $form, $form_state, $langcode, $items, $delta, $element); // This field has no value field. Just a fieldset for adding new annotation types. $widget['#type'] = 'fieldset'; $widget['#title'] = $element['#title']; $widget['#description'] = $element['#description']; $widget['#group'] = 'entity_form_vtabs'; $widget['cvterm_class_adder_instructions'] = array( '#type' => 'item', '#markup' => t('You may add annotation types to this form by providing a vocabulary name in the field above and clicking the "Add Annotation Type" button. This will add a new field to the form above for the vocabulary you entered which will allow users to associate terms from that vocabulary to this record.'), ); $options = tripal_get_cv_select_options(); $widget['value'] = array( '#type' => 'select', '#title' => t('Vocabulary'), '#options' => $options, '#description' => t("Please enter the vocabulary that contains terms you want to allow users to use for annotations."), ); // $widget['#element_validate'] = array('chado_linker__cvterm_adder_widget_validate'); // When this button is clicked, the form will be validated and submitted. // Therefore, we set custom submit and validate functions to override the // default form submit. In the validate function we set the form_state // to rebuild the form so the submit function never actually gets called, // but we need it or Drupal will run the default validate anyway. // we also set #limit_validation_errors to empty so fields that // are required that don't have values won't generate warnings. $widget['cvterm_class_adder_button'] = array( '#value' => t('Add Annotation Type'), '#type' => 'submit', '#name' => 'cvterm_class_adder_button', // '#submit' => array('chado_linker__cvterm_adder_widget_submit'), '#limit_validation_errors' => array(array($this->field['field_name'])), ); } /** * @see TripalField::widgetFormValidate() */ public function widgetFormValidate($form, &$form_state, $entity_type, $entity, $langcode, $delta) { if (array_key_exists('triggering_element', $form_state) and $form_state['triggering_element']['#name'] == 'cvterm_class_adder_button') { $this_field = $this->field; $field_name = $this_field['field_name']; $bundle = $entity->bundle; // Get the base table name from the field annotations. $base_table = $entity->chado_table; $cvterm_class_adder = $form_state['values'][$base_table . '_cvterm'][$langcode][$delta]['value']; $cv = chado_generate_var('cv', array('cv_id' => $cvterm_class_adder)); // Make sure a valid vocabulary is selected if (!$cv) { form_set_error("$field_name][$langcode][$delta][value", "Please select a vocabulary."); } else { // Make sure this vocabulary doesn't already have a field if (key_exists($field_name . '__' . $cv->cv_id, $form_state['values'])) { form_set_error("$field_name][$langcode][$delta][wrapper][terms_name", "Field for this vocabulary already exists. Please select another vocabulary."); } } } } /** * @see TripalField::widgetFormSubmit() */ public function widgetFormSubmit($form, &$form_state, $entity_type, $entity, $langcode, $delta) { // Add the new field to the entity if (array_key_exists('triggering_element', $form_state) and $form_state['triggering_element']['#name'] == 'cvterm_class_adder_button') { $form_state['rebuild'] = TRUE; $this_field = $this->field; $field_name = $this_field['field_name']; $bundle = $entity->bundle; // Get the base table name from the field annotations. $base_table = $entity->chado_table; $cvterm_class_adder = $form_state['values'][$base_table . '_cvterm'][$langcode][$delta]['value']; // Get the vocabulary. //$cvterm_class_adder = tripal_chado_get_field_form_values($field_name, $form_state); $cv = chado_generate_var('cv', array('cv_id' => $cvterm_class_adder)); if (!$cv) { return; } $type_field_name = $field_name . '__' . $cv->cv_id; // The field name is the table name in this case. We want to get the // primary key as this should be the field that maps th the value. $schema = chado_get_schema($field_name); $pkey = $schema['primary key'][0]; // Add the field if it doesn't already exists. $field = field_info_field($type_field_name); if (!$field) { $create_info = array( 'field_name' => $type_field_name, 'type' => 'chado_linker__cvterm', 'cardinality' => FIELD_CARDINALITY_UNLIMITED, 'locked' => FALSE, 'storage' => array( 'type' => 'field_chado_storage', ), 'settings' => array( 'chado_table' => $field_name, 'chado_column' => $pkey, 'base_table' => $base_table, ), ); $field = field_create_field($create_info); } // Attach the field to the bundle if it isn't already. if (!$field or !array_key_exists('bundles', $field) or !array_key_exists('TripalEntity', $field['bundles']) or !in_array($bundle, $field['bundles']['TripalEntity'])) { $createInstanceInfo = array( 'field_name' => $type_field_name, 'entity_type' => 'TripalEntity', 'bundle' => $bundle, 'label' => ucfirst(preg_replace('/_/', ' ', $cv->name)), 'description' => "Annotations from the $cv->name vocabulary", 'required' => FALSE, 'settings' => array(), 'widget' => array( 'type' => 'chado_linker__cvterm_widget', 'settings' => array( 'display_label' => 1, ), ), 'display' => array( 'default' => array( 'label' => 'above', 'type' => 'chado_linker__cvterm_formatter', 'settings' => array(), ), ), ); $instance = field_create_instance($createInstanceInfo); } } } }