'', 'chado_column' => '', 'base_table' => '', ); // Set this to the name of the storage backend that by default will support // this field. public static $default_storage = 'field_chado_storage'; /** * @see TripalField::formatterView() */ public function formatterView(&$element, $entity_type, $entity, $langcode, $items, $display) { $field_name = $this->field['field_name']; $chado_table = $this->instance['settings']['chado_table']; $properties = array(); foreach ($items as $delta => $item) { $properties[] = $item['chado-' . $chado_table . '__value']; } $content = implode(', ', $properties); if (count($items) > 0) { $element[0] = array( '#type' => 'markup', '#markup' => $content, ); } } /** * @see TripalField::widgetForm() */ public function widgetForm(&$widget, &$form, &$form_state, $langcode, $items, $delta, $element) { parent::widgetForm($widget, $form, $form_state, $langcode, $items, $delta, $element); $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->instance['settings']['chado_table']; $field_column = $this->instance['settings']['chado_column']; $instance = $this->instance; // Get the table name and cvterm that this field maps to. $matches = array(); preg_match('/(.*?)__(\d+)/', $field_name, $matches); // If the field name is not properly formatted then we can't tell what // table and type this is. So just return. if (count($matches) != 3) { return $widget; } $table_name = $matches[1]; $cvterm_id = $matches[2]; // Get the name of the pkey field for this property table and the name // of the FK field that links to the base table. $schema = chado_get_schema($table_name); $pkey = $schema['primary key'][0]; $base_table = $this->instance['settings']['base_table']; $lfkey_field = key($schema['foreign keys'][$base_table]['columns']); $rfkey_field = $schema['foreign keys'][$base_table]['columns'][$lfkey_field]; // Get the field defaults. $fk_value =key_exists(0, $items) ? $items[0]['chado-' . $field_table . '__' . $lfkey_field] : ''; $propval = ''; if (array_key_exists($delta, $items)) { $propval = tripal_get_field_item_keyval($items, $delta, 'chado-' . $table_name . '__value', $propval); } $widget['value'] = array( '#type' => 'value', '#value' => key_exists($delta, $items) ? $items[$delta]['value'] : '', ); $widget['chado-' . $table_name . '__' . $pkey] = array( '#type' => 'hidden', '#default_value' => !empty($items[$delta]['chado-' . $field_table . '__' . $pkey]) ? $items[$delta]['chado-' . $field_table . '__' . $pkey] : '', ); $widget['chado-' . $table_name . '__' . $lfkey_field] = array( '#type' => 'hidden', '#value' => $fk_value, ); $widget['chado-' . $table_name . '__value'] = array( '#type' => 'textfield', '#default_value' => $propval, '#title' => $instance['label'] . ' value', '#description' => $instance['description'], ); $widget['chado-' . $table_name . '__type_id'] = array( '#type' => 'hidden', '#value' => $cvterm_id, ); $widget['chado-' . $table_name . '__rank'] = array( '#type' => 'hidden', '#value' => $delta, ); } /** * @see TripalField::validate() */ public function validate($entity_type, $entity, $field, $items, &$errors) { } /** * @see TripalField::widgetFormSubmit() */ public function widgetFormSubmit($form, &$form_state, $entity_type, $entity, $langcode, $delta) { $field_name = $this->field['field_name']; $table_name = $this->instance['settings']['chado_table']; $schema = chado_get_schema($table_name); $pkey = $schema['primary key'][0]; $base_table = $this->instance['settings']['base_table']; $lfkey_field = key($schema['foreign keys'][$base_table]['columns']); $rfkey_field = $schema['foreign keys'][$base_table]['columns'][$lfkey_field]; $prop_value = isset($form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__value']) ? $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__value'] : ''; // If the user removed the contact from the contact_name field // then we want to clear out the rest of the hidden values. // Leave the primary key so the record can be deleted. if (!$prop_value) { $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__' . $pkey] = ''; $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__rank'] = ''; $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__type_id'] = ''; $form_state['values'][$field_name][$langcode][$delta]['chado-' . $table_name . '__' . $lfkey_field] = ''; } } /** * @see TripalField::load() */ public function load($entity, $details = array()) { $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->instance['settings']['chado_table']; $field_column = $this->instance['settings']['chado_column']; $base_table = $this->instance['settings']['base_table']; $matches = array(); preg_match('/(.*?)__(\d+)/', $field_name, $matches); $table_name = $matches[1]; $cvterm_id = $matches[2]; // Get the FK that links to the base record. $schema = chado_get_schema($field_table); $pkey = $schema['primary key'][0]; $fkey_lcolumn = key($schema['foreign keys'][$base_table]['columns']); $fkey_rcolumn = $schema['foreign keys'][$base_table]['columns'][$fkey_lcolumn]; // Set some defaults for the empty record. $chado_record = $entity->chado_record; $entity->{$field_name}['und'][0] = array( 'value' => '', 'chado-' . $field_table . '__' . $pkey => '', 'chado-' . $field_table . '__' . $fkey_lcolumn => $chado_record->{$fkey_lcolumn}, 'chado-' . $field_table . '__value' => '', 'chado-' . $field_table . '__type_id' => '', 'chado-' . $field_table . '__rank' => '', ); // Get the properties associated with this base record for this fields // given type. $columns = array('*'); $match = array( $fkey_lcolumn => $chado_record->{$fkey_lcolumn}, 'type_id' => $cvterm_id, ); $options = array( 'return_array' => TRUE, 'order_by' => array('rank' => 'ASC') ); $properties = chado_select_record($field_table, $columns, $match, $options); for ($i = 0; $i < count($properties); $i++) { $property = $properties[$i]; foreach ($schema['fields'] as $fname => $details) { $entity->{$field_name}['und'][$i] = array( 'value' => array(), 'chado-' . $field_table . '__' . $pkey => $property->$pkey, 'chado-' . $field_table . '__' . $fkey_lcolumn => $property->$fkey_lcolumn, 'chado-' . $field_table . '__value' => $property->value, 'chado-' . $field_table . '__type_id' => $property->type_id, 'chado-' . $field_table . '__rank' => $property->rank, ); } } } }