organism;
$organism = chado_expand_var($organism,'field','organism.comment'); ?>
";
}
// the $headers array is an array of fields to use as the colum headers.
// additional documentation can be found here
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
// This table for the organism has a vertical header (down the first column)
// so we do not provide headers here, but specify them in the $rows array below.
$headers = array();
// the $rows array contains an array of rows where each row is an array
// of values for each column of the table in that row. Additional documentation
// can be found here:
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$rows = array();
$infra = '';
if ($chado_version > 1.2 and $organism->type_id) {
$infra = $organism->type_id->name . ' ' . $organism->infraspecific_name . '';
}
// full name row
$rows[] = array(
array(
'data' => 'Full Name',
'header' => TRUE,
'width' => '30%',
),
'' . $organism->genus . ' ' . $organism->species . ' ' . $infra
);
// genus row
$rows[] = array(
array(
'data' => 'Genus',
'header' => TRUE,
'width' => '30%',
),
'' . $organism->genus . ''
);
// species row
$rows[] = array(
array(
'data' => 'Species',
'header' => TRUE
),
'' . $organism->species . ''
);
if ($chado_version > 1.2) {
$type_id = $organism->type_id ? $organism->type_id->name : '';
// type_id row
$rows[] = array(
array(
'data' => 'Infraspecific Rank',
'header' => TRUE
),
$type_id
);
// infraspecific name row
$rows[] = array(
array(
'data' => 'Infraspecific Name',
'header' => TRUE
),
'' . $organism->infraspecific_name . ''
);
}
// common name row
$rows[] = array(
array(
'data' => 'Common Name',
'header' => TRUE
),
$organism->common_name,
);
// abbreviation row
$rows[] = array(
array(
'data' => 'Abbreviation',
'header' => TRUE
),
$organism->abbreviation
);
// allow site admins to see the organism ID
if (user_access('view ids')) {
// Organism ID
$rows[] = array(
array(
'data' => 'Organism ID',
'header' => TRUE,
'class' => 'tripal-site-admin-only-table-row',
),
array(
'data' => $organism->organism_id,
'class' => 'tripal-site-admin-only-table-row',
),
);
}
// the $table array contains the headers and rows array as well as other
// options for controlling the display of the table. Additional
// documentation can be found here:
// https://api.drupal.org/api/drupal/includes%21theme.inc/function/theme_table/7
$table = array(
'header' => $headers,
'rows' => $rows,
'attributes' => array(
'id' => 'tripal_organism-table-base',
'class' => 'tripal-organism-data-table tripal-data-table',
),
'sticky' => FALSE,
'caption' => '',
'colgroups' => array(),
'empty' => '',
);
// once we have our table array structure defined, we call Drupal's theme_table()
// function to generate the table.
print theme_table($table); ?>
comment?>