$base_table))->fetchField(); if (!$bundle_id) { continue; } $bundle_name = 'bio_data_'.$bundle_id; // Find an entity from the above bundle. // @todo find a way to create a fake entity for use here. $entity_id = db_query('SELECT id FROM tripal_entity WHERE bundle=:bundle LIMIT 1', array(':bundle' => $bundle_name))->fetchField(); // set variables to guide testing. $expect = [ 'has_rank' => TRUE, 'has_value' => FALSE, 'subject_key' => 'subject_id', 'object_key' => 'object_id', 'base_table' => $base_table, 'relationship_table' => $base_table.'_relationship' ]; if ($base_table == 'organism') { $expect['has_rank'] = FALSE; } if ($base_table == 'stock') { $expect['has_value'] = TRUE; } if ($base_table == 'project') { $expect['subject_key'] = 'subject_project_id'; $expect['object_key'] = 'object_project_id'; } $data[] = [$bundle_name, $field_name, $widget_name, $entity_id, $expect]; } return $data; } /** * Test that we can initialize the widget properly. * * @dataProvider provideEntities() * * @group widget * @group sbo__relationship */ public function testWidgetClassInitialization($bundle_name, $field_name, $widget_name, $entity_id, $expect) { // Load the entity. $entity = entity_load('TripalEntity', [$entity_id]); $entity = $entity[$entity_id]; // Initialize the widget class via the TripalFieldTestHelper class. $machine_names = array( 'field_name' => $field_name, 'widget_name' => $widget_name, ); $field_info = field_info_field($field_name); $instance_info = field_info_instance('TripalEntity', $field_name, $bundle_name); $helper = new \TripalFieldTestHelper($bundle_name, $machine_names, $entity, $field_info, $instance_info); $widget_class = $helper->getInitializedClass(); // Check we have the variables we initialized. $this->assertNotEmpty($helper->bundle, "Could not load the bundle."); $this->assertNotEmpty($helper->getFieldInfo(), "Could not lookup the field information."); $this->assertNotEmpty($helper->getInstanceInfo(), "Could not lookup the instance information."); $this->assertNotEmpty($widget_class, "Couldn't create a widget class instance."); $this->assertNotEmpty($entity, "Couldn't load an entity."); // Check a little deeper... $this->assertEquals($helper->instance_info['settings']['chado_table'], $expect['relationship_table'], "Instance settings were not initialized fully."); } /** * Test the widget Form. * * @dataProvider provideEntities() * * @group widget * @group sbo__relationship */ public function testWidgetForm($bundle_name, $field_name, $widget_name, $entity_id, $expect) { // Load the entity. $entity = entity_load('TripalEntity', [$entity_id]); $entity = $entity[$entity_id]; // Initialize the widget class via the TripalFieldTestHelper class. $machine_names = array( 'field_name' => $field_name, 'widget_name' => $widget_name, ); $field_info = field_info_field($field_name); $instance_info = field_info_instance('TripalEntity', $field_name, $bundle_name); $helper = new \TripalFieldTestHelper($bundle_name, $machine_names, $entity, $field_info, $instance_info); $widget_class = $helper->getInitializedClass(); $base_table = $entity->chado_table; // Stub out a fake objects. $delta = 1; $langcode = LANGUAGE_NONE; $widget = $helper->mockElement($delta, $langcode); $form = $helper->mockForm($delta, $langcode); $form_state = $helper->mockFormState($delta, $langcode); $element = $helper->mockElement($delta, $langcode); $items = [ 'value' => '', 'chado-'.$base_table.'_relationship__organism_relationship_id' => '', 'chado-'.$base_table.'_relationship__subject_id' => '', 'chado-'.$base_table.'_relationship__object_id' => '', 'chado-'.$base_table.'_relationship__type_id' => '', 'object_name' => '', 'subject_name' => '', 'type_name' => '', ]; // Execute the form method. $widget_class->form($widget, $form, $form_state, $langcode, $items, $delta, $element); // Check the resulting for array $this->assertArrayHasKey('subject_name', $widget, "The form for $bundle_name($base_table) does not have a subject element."); $this->assertArrayHasKey('type_name', $widget, "The form for $bundle_name($base_table) does not have a type element."); $this->assertArrayHasKey('object_name', $widget, "The form for $bundle_name($base_table) does not have a object element."); // Check the subject/object keys were correctly determined. $this->assertEquals($expect['subject_key'], $widget['#subject_id_key'], "The form didn't determine the subject key correctly."); $this->assertEquals($expect['object_key'], $widget['#object_id_key'], "The form didn't determine the object key correctly."); } /** * DataProvider: Provides datasets to validate. */ public function provideThings2Validate() { $data = []; foreach (['organism', 'stock', 'project'] as $base_table) { $base_table = $base_table; $field_name = 'sbo__relationship'; $widget_name = 'sbo__relationship_widget'; // find a bundle which stores it's data in the given base table. // This will work on Travis since Tripal creates matching bundles by default. // @todo ideally we would create a fake bundle here. $bundle_id = db_query(" SELECT bundle_id FROM chado_bundle b LEFT JOIN tripal_entity e ON e.bundle='bio_data_'||b.bundle_id WHERE data_table=:table AND id IS NOT NULL LIMIT 1", array(':table' => $base_table))->fetchField(); if (!$bundle_id) { continue; } $bundle_name = 'bio_data_'.$bundle_id; // Find an entity from the above bundle. // @todo find a way to create a fake entity for use here. $entity_id = db_query('SELECT id FROM tripal_entity WHERE bundle=:bundle LIMIT 1', array(':bundle' => $bundle_name))->fetchField(); $entity = entity_load('TripalEntity', [ $entity_id ]); $entity = $entity[ $entity_id ]; $values = [ 'subject_name' => 'Fake Non-existant Name '.uniqid(), 'type_name' => 'organism', 'vocabulary' => 47, 'object_name' => $entity->chado_record->name, ]; if ($base_table == 'organism') { $values['object_name'] = $entity->chado_record->species; } // set variables to guide testing. $expect = [ 'has_rank' => TRUE, 'has_value' => FALSE, 'subject_key' => 'subject_id', 'object_key' => 'object_id', 'base_table' => $base_table, 'relationship_table' => $base_table.'_relationship', 'num_errors' => 0, ]; if ($base_table == 'organism') { $expect['has_rank'] = FALSE; } if ($base_table == 'stock') { $expect['has_value'] = TRUE; } if ($base_table == 'project') { $expect['subject_key'] = 'subject_project_id'; $expect['object_key'] = 'object_project_id'; } $data[] = [ [ 'field_name' => $field_name, 'widget_name' => $widget_name, 'bundle_id' => $bundle_id, 'bundle_name' => $bundle_name, ], $entity, $values, $expect, ]; } return $data; } /** * Test sbo__relationship_widget->validate(). * * @dataProvider provideThings2Validate() * * @group lacey-wip * @group widget * @group sbo__relationship */ public function testWidgetValidate($info, $entity, $initial_values, $expect) { $base_table = $entity->chado_table; // Initialize the widget class via the TripalFieldTestHelper class. $machine_names = array( 'field_name' => $info['field_name'], 'widget_name' => $info['widget_name'], ); $field_info = field_info_field($info['field_name']); $instance_info = field_info_instance('TripalEntity', $info['field_name'], $info['bundle_name']); $helper = new \TripalFieldTestHelper($info['bundle_name'], $machine_names, $entity, $field_info, $instance_info); $widget_class = $helper->getInitializedClass(); // Mock objects. $delta = 1; $langcode = LANGUAGE_NONE; $widget = $helper->mockElement($delta, $langcode); $form = $helper->mockForm($delta, $langcode); $form_state = $helper->mockFormState($delta, $langcode, $initial_values); $element = $helper->mockElement($delta, $langcode); $widget_class->validate($element, $form, $form_state, $langcode, $delta); // @debug print_r($form_state['values'][$field_name][$langcode][$delta]); // Ensure the chado-table__column entries are there. $this->assertArrayHasKey( 'chado-'.$base_table.'_relationship__'.$expect['subject_key'], $form_state['values'][$field_name][$langcode][$delta], 'Failed to find the subject_id in the processed values (Base: '.$base_table.'). This implies the validate function was not able to validate the subject.' ); $this->assertArrayHasKey( 'chado-'.$base_table.'_relationship__'.$expect['object_key'], $form_state['values'][$field_name][$langcode][$delta], 'Failed to find the object_id in the processed values (Base: '.$base_table.'). This implies the validate function was not able to validate the object.' ); $this->assertArrayHasKey( 'chado-'.$base_table.'_relationship__type_id', $form_state['values'][$field_name][$langcode][$delta], 'Failed to find the type_id in the processed values (Base: '.$base_table.'). This implies the validate function was not able to validate the type.' ); // Check for errors. $errors = form_get_errors(); $this->assertEmpty($errors, "There should be no form errors! But these were registered: ".print_r($errors, TRUE)); // Clean up after ourselves by removing any errors we logged. form_clear_error(); } /** * Test the Relationship Type Options. * Specfically, sbo__relationship_widget->get_rtype_select_options(). * * @dataProvider provideEntities() * * @group widget * @group sbo__relationship */ public function testGetRTypeSelectOptions($bundle_name, $field_name, $widget_name, $entity_id, $expect) { // The different options are set in the instance. // Therefore we want to make a fake instance to control this setting. $fake_instance = field_info_instance('TripalEntity', $field_name, $bundle_name); //$fake_instance['settings']['relationships']['option1_vocabs'] = 5; $this->assertTrue(true); } }