<?php
/* @file: This file contains default schema definitions for all chado v1.2 tables
* to be used by other function. Specifically these functions are used
* by the tripal_core select/insert/update API functions and by
* the Tripal Views module.
*
* These schema definitions can be augmented by another modules
* (specifically to add missing definitions) by implementing
* hook_chado_schema_v1_2_<table name>().
*
* @defgroup tripal_schema_api Core Module Schema API
* @{
* Provides an application programming interface (API) for describing Chado tables.
* This API consists of a set of functions, one for each table in Chado. Each
* function simply returns a Drupal style array that defines the table.
*
* Because Drupal 6 does not handle foreign key (FK) relationships, however FK
* relationships are needed to for Tripal Views. Therefore, FK relationships
* have been added to the schema defintitions below.
*
* The functions provided in this documentation should not be called as is, but if you need
* the Drupal-style array definition for any table, use the following function
* call:
*
* $table_desc = tripal_core_get_chado_table_schema($table)
*
* where the variable $table contains the name of the table you want to
* retireve. The tripal_core_get_chado_table_schema function determines the appropriate version of
* Chado and uses the Drupal hook infrastructure to call the appropriate
* hook function to retrieve the table schema.
*
* @}
* @ingroup tripal_api
*/
/**
* Implements hook_chado_schema_v1_2_acquisition()
* Purpose: To describe the structure of 'acquisition' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'acquisition' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_acquisition() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'acquisition_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'channel_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'acquisitiondate' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => FALSE,
'default' => 'ow(',
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'uri' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'acquisition_id',
),
'unique keys' => array(
'acquisition_c1' => array(
0 => 'name',
),
),
'indexes' => array(
'acquisition_idx1' => array(
0 => 'assay_id',
),
'acquisition_idx2' => array(
0 => 'protocol_id',
),
'acquisition_idx3' => array(
0 => 'channel_id',
),
),
'foreign keys' => array(
'protocol' => array(
'table' => 'protocol',
'columns' => array(
'protocol_id' => 'protocol_id',
),
),
'assay' => array(
'table' => 'assay',
'columns' => array(
'assay_id' => 'assay_id',
),
),
'channel' => array(
'table' => 'channel',
'columns' => array(
'channel_id' => 'channel_id',
),
),
),
'table' => 'acquisition',
'referring_tables' => array(
0 => 'acquisition_relationship',
2 => 'acquisitionprop',
3 => 'quantification',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_acquisition_relationship()
* Purpose: To describe the structure of 'acquisition_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'acquisition_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_acquisition_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'acquisition_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'acquisition_relationship_id',
),
'unique keys' => array(
'acquisition_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
3 => 'rank',
),
),
'indexes' => array(
'acquisition_relationship_idx1' => array(
0 => 'subject_id',
),
'acquisition_relationship_idx2' => array(
0 => 'type_id',
),
'acquisition_relationship_idx3' => array(
0 => 'object_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'acquisition' => array(
'table' => 'acquisition',
'columns' => array(
'subject_id' => 'acquisition_id',
'object_id' => 'acquisition_id',
),
),
),
'table' => 'acquisition_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_acquisitionprop()
* Purpose: To describe the structure of 'acquisitionprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'acquisitionprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_acquisitionprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'acquisitionprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'acquisition_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'acquisitionprop_id',
),
'unique keys' => array(
'acquisitionprop_c1' => array(
0 => 'acquisition_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'acquisitionprop_idx1' => array(
0 => 'acquisition_id',
),
'acquisitionprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'acquisition' => array(
'table' => 'acquisition',
'columns' => array(
'acquisition_id' => 'acquisition_id',
),
),
),
'table' => 'acquisitionprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_analysis()
* Purpose: To describe the structure of 'analysis' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'analysis' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_analysis() {
$description = array(
'referring_tables' => array(
0 => 'analysisfeature',
1 => 'analysisprop',
2 => 'phylotree',
3 => 'quantification',
),
'description' => 'TODO: please describe this table!',
'fields' => array(
'analysis_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'program' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'programversion' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'algorithm' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'sourcename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'sourceversion' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'sourceuri' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'timeexecuted' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => TRUE,
'default' => 'ow(',
),
),
'primary key' => array(
0 => 'analysis_id',
),
'unique keys' => array(
'analysis_c1' => array(
0 => 'program',
1 => 'programversion',
2 => 'sourcename',
),
),
'foreign keys' => array(
),
'table' => 'analysis',
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_analysisfeature()
* Purpose: To describe the structure of 'analysisfeature' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'analysisfeature' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_analysisfeature() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'analysisfeature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'analysis_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rawscore' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'size' => 'big',
'not null' => FALSE,
),
'normscore' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'size' => 'big',
'not null' => FALSE,
),
'significance' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'size' => 'big',
'not null' => FALSE,
),
'identity' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'size' => 'big',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'analysisfeature_id',
),
'unique keys' => array(
'analysisfeature_c1' => array(
0 => 'feature_id',
1 => 'analysis_id',
),
),
'indexes' => array(
'analysisfeature_idx1' => array(
0 => 'feature_id',
),
'analysisfeature_idx2' => array(
0 => 'analysis_id',
),
),
'foreign keys' => array(
'analysis' => array(
'table' => 'analysis',
'columns' => array(
'analysis_id' => 'analysis_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
),
'table' => 'analysisfeature',
'referring_tables' => array(
0 => 'analysisfeatureprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_analysisfeatureprop()
* Purpose: To describe the structure of 'analysisfeatureprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'analysisfeatureprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_analysisfeatureprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'analysisfeatureprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'analysisfeature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'analysisfeatureprop_id',
),
'unique keys' => array(
'analysisfeature_id_type_id_rank' => array(
0 => 'analysisfeature_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'analysisfeature' => array(
'table' => 'analysisfeature',
'columns' => array(
'analysisfeature_id' => 'analysisfeature_id',
),
),
),
'table' => 'analysisfeatureprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_analysisprop()
* Purpose: To describe the structure of 'analysisprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'analysisprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_analysisprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'analysisprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'analysis_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'analysisprop_id',
),
'unique keys' => array(
'analysisprop_c1' => array(
0 => 'analysis_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'analysisprop_idx1' => array(
0 => 'analysis_id',
),
'analysisprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'analysis' => array(
'table' => 'analysis',
'columns' => array(
'analysis_id' => 'analysis_id',
),
),
),
'table' => 'analysisprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_arraydesign()
* Purpose: To describe the structure of 'arraydesign' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'arraydesign' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_arraydesign() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'arraydesign_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'manufacturer_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'platformtype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'substratetype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'version' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'array_dimensions' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'element_dimensions' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'num_of_elements' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'num_array_columns' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'num_array_rows' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'num_grid_columns' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'num_grid_rows' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'num_sub_columns' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'num_sub_rows' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'arraydesign_id',
),
'unique keys' => array(
'arraydesign_c1' => array(
0 => 'name',
),
),
'indexes' => array(
'arraydesign_idx1' => array(
0 => 'manufacturer_id',
),
'arraydesign_idx2' => array(
0 => 'platformtype_id',
),
'arraydesign_idx3' => array(
0 => 'substratetype_id',
),
'arraydesign_idx4' => array(
0 => 'protocol_id',
),
'arraydesign_idx5' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'platformtype_id' => 'cvterm_id',
'substratetype_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'manufacturer_id' => 'contact_id',
),
),
'protocol' => array(
'table' => 'protocol',
'columns' => array(
'protocol_id' => 'protocol_id',
),
),
),
'table' => 'arraydesign',
'referring_tables' => array(
0 => 'arraydesignprop',
1 => 'assay',
2 => 'element',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_arraydesignprop()
* Purpose: To describe the structure of 'arraydesignprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'arraydesignprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_arraydesignprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'arraydesignprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'arraydesign_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'arraydesignprop_id',
),
'unique keys' => array(
'arraydesignprop_c1' => array(
0 => 'arraydesign_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'arraydesignprop_idx1' => array(
0 => 'arraydesign_id',
),
'arraydesignprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'arraydesign' => array(
'table' => 'arraydesign',
'columns' => array(
'arraydesign_id' => 'arraydesign_id',
),
),
),
'table' => 'arraydesignprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_assay()
* Purpose: To describe the structure of 'assay' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'assay' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_assay() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'arraydesign_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'assaydate' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => FALSE,
'default' => 'ow(',
),
'arrayidentifier' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'arraybatchidentifier' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'operator_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'assay_id',
),
'unique keys' => array(
'assay_c1' => array(
0 => 'name',
),
),
'indexes' => array(
'assay_idx1' => array(
0 => 'arraydesign_id',
),
'assay_idx2' => array(
0 => 'protocol_id',
),
'assay_idx3' => array(
0 => 'operator_id',
),
'assay_idx4' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'operator_id' => 'contact_id',
),
),
'arraydesign' => array(
'table' => 'arraydesign',
'columns' => array(
'arraydesign_id' => 'arraydesign_id',
),
),
'protocol' => array(
'table' => 'protocol',
'columns' => array(
'protocol_id' => 'protocol_id',
),
),
),
'table' => 'assay',
'referring_tables' => array(
0 => 'acquisition',
1 => 'assay_biomaterial',
2 => 'assay_project',
3 => 'assayprop',
4 => 'control',
5 => 'study_assay',
6 => 'studyfactorvalue',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_assay_biomaterial()
* Purpose: To describe the structure of 'assay_biomaterial' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'assay_biomaterial' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_assay_biomaterial() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'assay_biomaterial_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'biomaterial_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'channel_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'assay_biomaterial_id',
),
'unique keys' => array(
'assay_biomaterial_c1' => array(
0 => 'assay_id',
1 => 'biomaterial_id',
2 => 'channel_id',
3 => 'rank',
),
),
'indexes' => array(
'assay_biomaterial_idx1' => array(
0 => 'assay_id',
),
'assay_biomaterial_idx2' => array(
0 => 'biomaterial_id',
),
'assay_biomaterial_idx3' => array(
0 => 'channel_id',
),
),
'foreign keys' => array(
'assay' => array(
'table' => 'assay',
'columns' => array(
'assay_id' => 'assay_id',
),
),
'biomaterial' => array(
'table' => 'biomaterial',
'columns' => array(
'biomaterial_id' => 'biomaterial_id',
),
),
'channel' => array(
'table' => 'channel',
'columns' => array(
'channel_id' => 'channel_id',
),
),
),
'table' => 'assay_biomaterial',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_assay_project()
* Purpose: To describe the structure of 'assay_project' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'assay_project' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_assay_project() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'assay_project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'assay_project_id',
),
'unique keys' => array(
'assay_project_c1' => array(
0 => 'assay_id',
1 => 'project_id',
),
),
'indexes' => array(
'assay_project_idx1' => array(
0 => 'assay_id',
),
'assay_project_idx2' => array(
0 => 'project_id',
),
),
'foreign keys' => array(
'project' => array(
'table' => 'project',
'columns' => array(
'project_id' => 'project_id',
),
),
'assay' => array(
'table' => 'assay',
'columns' => array(
'assay_id' => 'assay_id',
),
),
),
'table' => 'assay_project',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_assayprop()
* Purpose: To describe the structure of 'assayprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'assayprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_assayprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'assayprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'assayprop_id',
),
'unique keys' => array(
'assayprop_c1' => array(
0 => 'assay_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'assayprop_idx1' => array(
0 => 'assay_id',
),
'assayprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'assay' => array(
'table' => 'assay',
'columns' => array(
'assay_id' => 'assay_id',
),
),
),
'table' => 'assayprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_biomaterial()
* Purpose: To describe the structure of 'biomaterial' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'biomaterial' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_biomaterial() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'biomaterial_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'taxon_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'biosourceprovider_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'biomaterial_id',
),
'unique keys' => array(
'biomaterial_c1' => array(
0 => 'name',
),
),
'indexes' => array(
'biomaterial_idx1' => array(
0 => 'taxon_id',
),
'biomaterial_idx2' => array(
0 => 'biosourceprovider_id',
),
'biomaterial_idx3' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'taxon_id' => 'organism_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'biosourceprovider_id' => 'contact_id',
),
),
),
'table' => 'biomaterial',
'referring_tables' => array(
0 => 'assay_biomaterial',
1 => 'biomaterial_dbxref',
2 => 'biomaterial_relationship',
4 => 'biomaterial_treatment',
5 => 'biomaterialprop',
6 => 'treatment',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_biomaterial_dbxref()
* Purpose: To describe the structure of 'biomaterial_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'biomaterial_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_biomaterial_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'biomaterial_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'biomaterial_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'biomaterial_dbxref_id',
),
'unique keys' => array(
'biomaterial_dbxref_c1' => array(
0 => 'biomaterial_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'biomaterial_dbxref_idx1' => array(
0 => 'biomaterial_id',
),
'biomaterial_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'biomaterial' => array(
'table' => 'biomaterial',
'columns' => array(
'biomaterial_id' => 'biomaterial_id',
),
),
),
'table' => 'biomaterial_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_biomaterial_relationship()
* Purpose: To describe the structure of 'biomaterial_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'biomaterial_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_biomaterial_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'biomaterial_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'biomaterial_relationship_id',
),
'unique keys' => array(
'biomaterial_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
),
),
'indexes' => array(
'biomaterial_relationship_idx1' => array(
0 => 'subject_id',
),
'biomaterial_relationship_idx2' => array(
0 => 'object_id',
),
'biomaterial_relationship_idx3' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'biomaterial' => array(
'table' => 'biomaterial',
'columns' => array(
'subject_id' => 'biomaterial_id',
'object_id' => 'biomaterial_id',
),
),
),
'table' => 'biomaterial_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_biomaterial_treatment()
* Purpose: To describe the structure of 'biomaterial_treatment' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'biomaterial_treatment' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_biomaterial_treatment() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'biomaterial_treatment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'biomaterial_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'treatment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'unittype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'biomaterial_treatment_id',
),
'unique keys' => array(
'biomaterial_treatment_c1' => array(
0 => 'biomaterial_id',
1 => 'treatment_id',
),
),
'indexes' => array(
'biomaterial_treatment_idx1' => array(
0 => 'biomaterial_id',
),
'biomaterial_treatment_idx2' => array(
0 => 'treatment_id',
),
'biomaterial_treatment_idx3' => array(
0 => 'unittype_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'unittype_id' => 'cvterm_id',
),
),
'biomaterial' => array(
'table' => 'biomaterial',
'columns' => array(
'biomaterial_id' => 'biomaterial_id',
),
),
'treatment' => array(
'table' => 'treatment',
'columns' => array(
'treatment_id' => 'treatment_id',
),
),
),
'table' => 'biomaterial_treatment',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_biomaterialprop()
* Purpose: To describe the structure of 'biomaterialprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'biomaterialprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_biomaterialprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'biomaterialprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'biomaterial_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'biomaterialprop_id',
),
'unique keys' => array(
'biomaterialprop_c1' => array(
0 => 'biomaterial_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'biomaterialprop_idx1' => array(
0 => 'biomaterial_id',
),
'biomaterialprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'biomaterial' => array(
'table' => 'biomaterial',
'columns' => array(
'biomaterial_id' => 'biomaterial_id',
),
),
),
'table' => 'biomaterialprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line()
* Purpose: To describe the structure of 'cell_line' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'timeaccessioned' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => TRUE,
'default' => 'ow(',
),
'timelastmodified' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => TRUE,
'default' => 'ow(',
),
),
'primary key' => array(
0 => 'cell_line_id',
),
'unique keys' => array(
'cell_line_c1' => array(
0 => 'uniquename',
1 => 'organism_id',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
),
'table' => 'cell_line',
'referring_tables' => array(
0 => 'cell_line_cvterm',
1 => 'cell_line_dbxref',
2 => 'cell_line_feature',
3 => 'cell_line_library',
4 => 'cell_line_pub',
5 => 'cell_line_relationship',
7 => 'cell_line_synonym',
8 => 'cell_lineprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_cvterm()
* Purpose: To describe the structure of 'cell_line_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'cell_line_cvterm_id',
),
'unique keys' => array(
'cell_line_cvterm_c1' => array(
0 => 'cell_line_id',
1 => 'cvterm_id',
2 => 'pub_id',
3 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'cell_line_id' => 'cell_line_id',
),
),
),
'table' => 'cell_line_cvterm',
'referring_tables' => array(
0 => 'cell_line_cvtermprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_cvtermprop()
* Purpose: To describe the structure of 'cell_line_cvtermprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_cvtermprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_cvtermprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_cvtermprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'cell_line_cvtermprop_id',
),
'unique keys' => array(
'cell_line_cvtermprop_c1' => array(
0 => 'cell_line_cvterm_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'cell_line_cvterm' => array(
'table' => 'cell_line_cvterm',
'columns' => array(
'cell_line_cvterm_id' => 'cell_line_cvterm_id',
),
),
),
'table' => 'cell_line_cvtermprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_dbxref()
* Purpose: To describe the structure of 'cell_line_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'ru',
),
),
'primary key' => array(
0 => 'cell_line_dbxref_id',
),
'unique keys' => array(
'cell_line_dbxref_c1' => array(
0 => 'cell_line_id',
1 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'cell_line_id' => 'cell_line_id',
),
),
),
'table' => 'cell_line_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_feature()
* Purpose: To describe the structure of 'cell_line_feature' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_feature' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_feature() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'cell_line_feature_id',
),
'unique keys' => array(
'cell_line_feature_c1' => array(
0 => 'cell_line_id',
1 => 'feature_id',
2 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'cell_line_id' => 'cell_line_id',
),
),
),
'table' => 'cell_line_feature',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_library()
* Purpose: To describe the structure of 'cell_line_library' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_library' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_library() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'cell_line_library_id',
),
'unique keys' => array(
'cell_line_library_c1' => array(
0 => 'cell_line_id',
1 => 'library_id',
2 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'library' => array(
'table' => 'library',
'columns' => array(
'library_id' => 'library_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'cell_line_id' => 'cell_line_id',
),
),
),
'table' => 'cell_line_library',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_pub()
* Purpose: To describe the structure of 'cell_line_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'cell_line_pub_id',
),
'unique keys' => array(
'cell_line_pub_c1' => array(
0 => 'cell_line_id',
1 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'cell_line_id' => 'cell_line_id',
),
),
),
'table' => 'cell_line_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_relationship()
* Purpose: To describe the structure of 'cell_line_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'cell_line_relationship_id',
),
'unique keys' => array(
'cell_line_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'subject_id' => 'cell_line_id',
'object_id' => 'cell_line_id',
),
),
),
'table' => 'cell_line_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_line_synonym()
* Purpose: To describe the structure of 'cell_line_synonym' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_line_synonym' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_line_synonym() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_line_synonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'synonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'is_internal' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
),
'primary key' => array(
0 => 'cell_line_synonym_id',
),
'unique keys' => array(
'cell_line_synonym_c1' => array(
0 => 'synonym_id',
1 => 'cell_line_id',
2 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'synonym' => array(
'table' => 'synonym',
'columns' => array(
'synonym_id' => 'synonym_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'cell_line_id' => 'cell_line_id',
),
),
),
'table' => 'cell_line_synonym',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_lineprop()
* Purpose: To describe the structure of 'cell_lineprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_lineprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_lineprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_lineprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_line_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'cell_lineprop_id',
),
'unique keys' => array(
'cell_lineprop_c1' => array(
0 => 'cell_line_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'cell_line' => array(
'table' => 'cell_line',
'columns' => array(
'cell_line_id' => 'cell_line_id',
),
),
),
'table' => 'cell_lineprop',
'referring_tables' => array(
0 => 'cell_lineprop_pub',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cell_lineprop_pub()
* Purpose: To describe the structure of 'cell_lineprop_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cell_lineprop_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cell_lineprop_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cell_lineprop_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cell_lineprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'cell_lineprop_pub_id',
),
'unique keys' => array(
'cell_lineprop_pub_c1' => array(
0 => 'cell_lineprop_id',
1 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'cell_lineprop' => array(
'table' => 'cell_lineprop',
'columns' => array(
'cell_lineprop_id' => 'cell_lineprop_id',
),
),
),
'table' => 'cell_lineprop_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_chadoprop()
* Purpose: To describe the structure of 'chadoprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'chadoprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_chadoprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'chadoprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'chadoprop_id',
),
'unique keys' => array(
'chadoprop_c1' => array(
0 => 'type_id',
1 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'chadoprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_channel()
* Purpose: To describe the structure of 'channel' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'channel' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_channel() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'channel_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'definition' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'channel_id',
),
'unique keys' => array(
'channel_c1' => array(
0 => 'name',
),
),
'foreign keys' => array(
),
'table' => 'channel',
'referring_tables' => array(
0 => 'acquisition',
1 => 'assay_biomaterial',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_contact()
* Purpose: To describe the structure of 'contact' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'contact' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_contact() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'contact_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'contact_id',
),
'unique keys' => array(
'contact_c1' => array(
0 => 'name',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'contact',
'referring_tables' => array(
0 => 'arraydesign',
1 => 'assay',
2 => 'biomaterial',
3 => 'contact_relationship',
5 => 'nd_experiment_contact',
6 => 'project_contact',
14 => 'quantification',
15 => 'stockcollection',
16 => 'study',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_contact_relationship()
* Purpose: To describe the structure of 'contact_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'contact_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_contact_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'contact_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'contact_relationship_id',
),
'unique keys' => array(
'contact_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
),
),
'indexes' => array(
'contact_relationship_idx1' => array(
0 => 'type_id',
),
'contact_relationship_idx2' => array(
0 => 'subject_id',
),
'contact_relationship_idx3' => array(
0 => 'object_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'subject_id' => 'contact_id',
'object_id' => 'contact_id',
),
),
),
'table' => 'contact_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_control()
* Purpose: To describe the structure of 'control' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'control' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_control() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'control_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'tableinfo_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'row_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'control_id',
),
'indexes' => array(
'control_idx1' => array(
0 => 'type_id',
),
'control_idx2' => array(
0 => 'assay_id',
),
'control_idx3' => array(
0 => 'tableinfo_id',
),
'control_idx4' => array(
0 => 'row_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'tableinfo' => array(
'table' => 'tableinfo',
'columns' => array(
'tableinfo_id' => 'tableinfo_id',
),
),
'assay' => array(
'table' => 'assay',
'columns' => array(
'assay_id' => 'assay_id',
),
),
),
'table' => 'control',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cv()
* Purpose: To describe the structure of 'cv' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cv' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cv() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cv_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'definition' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'cv_id',
),
'unique keys' => array(
'cv_c1' => array(
0 => 'name',
),
),
'foreign keys' => array(
),
'table' => 'cv',
'referring_tables' => array(
0 => 'cvprop',
1 => 'cvterm',
2 => 'cvtermpath',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cvprop()
* Purpose: To describe the structure of 'cvprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cvprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cvprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cvprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cv_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'cvprop_id',
),
'unique keys' => array(
'cvprop_c1' => array(
0 => 'cv_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'cv' => array(
'table' => 'cv',
'columns' => array(
'cv_id' => 'cv_id',
),
),
),
'table' => 'cvprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cvterm()
* Purpose: To describe the structure of 'cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cv_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '1024',
'not null' => TRUE,
),
'definition' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_obsolete' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
'is_relationshiptype' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'cvterm_id',
),
'unique keys' => array(
'cvterm_c1' => array(
0 => 'name',
1 => 'cv_id',
2 => 'is_obsolete',
),
'cvterm_c2' => array(
0 => 'dbxref_id',
),
),
'indexes' => array(
'cvterm_idx1' => array(
0 => 'cv_id',
),
'cvterm_idx2' => array(
0 => 'name',
),
'cvterm_idx3' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'cv' => array(
'table' => 'cv',
'columns' => array(
'cv_id' => 'cv_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'table' => 'cvterm',
'referring_tables' => array(
0 => 'acquisition_relationship',
1 => 'acquisitionprop',
2 => 'analysisfeatureprop',
3 => 'analysisprop',
4 => 'arraydesign',
6 => 'arraydesignprop',
7 => 'assayprop',
8 => 'biomaterial_relationship',
9 => 'biomaterial_treatment',
10 => 'biomaterialprop',
11 => 'cell_line_cvterm',
12 => 'cell_line_cvtermprop',
13 => 'cell_line_relationship',
14 => 'cell_lineprop',
15 => 'chadoprop',
23 => 'contact',
24 => 'contact_relationship',
25 => 'control',
26 => 'cvprop',
27 => 'cvterm_dbxref',
28 => 'cvterm_relationship',
31 => 'cvtermpath',
34 => 'cvtermprop',
36 => 'cvtermsynonym',
38 => 'dbxrefprop',
39 => 'element',
40 => 'element_relationship',
41 => 'elementresult_relationship',
42 => 'environment_cvterm',
43 => 'expression_cvterm',
45 => 'expression_cvtermprop',
46 => 'expressionprop',
47 => 'feature',
48 => 'feature_cvterm',
49 => 'feature_cvtermprop',
50 => 'feature_expressionprop',
51 => 'feature_genotype',
52 => 'feature_pubprop',
53 => 'feature_relationship',
54 => 'feature_relationshipprop',
55 => 'featuremap',
56 => 'featureprop',
57 => 'genotype',
58 => 'genotypeprop',
66 => 'library',
67 => 'library_cvterm',
68 => 'libraryprop',
69 => 'nd_experiment',
70 => 'nd_experiment_stock',
71 => 'nd_experiment_stockprop',
72 => 'nd_experimentprop',
73 => 'nd_geolocationprop',
74 => 'nd_protocol',
75 => 'nd_protocol_reagent',
76 => 'nd_protocolprop',
77 => 'nd_reagent',
78 => 'nd_reagent_relationship',
79 => 'nd_reagentprop',
80 => 'organismprop',
81 => 'phendesc',
82 => 'phenotype',
86 => 'phenotype_comparison_cvterm',
87 => 'phenotype_cvterm',
88 => 'phenstatement',
89 => 'phylonode',
90 => 'phylonode_relationship',
91 => 'phylonodeprop',
92 => 'phylotree',
93 => 'project_relationship',
101 => 'projectprop',
109 => 'protocol',
110 => 'protocolparam',
112 => 'pub',
113 => 'pub_relationship',
114 => 'pubprop',
115 => 'quantification_relationship',
116 => 'quantificationprop',
117 => 'stock',
118 => 'stock_cvterm',
119 => 'stock_cvtermprop',
127 => 'stock_dbxrefprop',
135 => 'stock_relationship',
136 => 'stock_relationship_cvterm',
144 => 'stockcollection',
145 => 'stockcollectionprop',
146 => 'stockprop',
147 => 'studydesignprop',
148 => 'studyfactor',
149 => 'studyprop',
150 => 'studyprop_feature',
151 => 'synonym',
152 => 'treatment',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cvterm_dbxref()
* Purpose: To describe the structure of 'cvterm_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cvterm_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cvterm_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cvterm_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_for_definition' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'cvterm_dbxref_id',
),
'unique keys' => array(
'cvterm_dbxref_c1' => array(
0 => 'cvterm_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'cvterm_dbxref_idx1' => array(
0 => 'cvterm_id',
),
'cvterm_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'table' => 'cvterm_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cvterm_relationship()
* Purpose: To describe the structure of 'cvterm_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cvterm_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cvterm_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cvterm_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'cvterm_relationship_id',
),
'unique keys' => array(
'cvterm_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
),
),
'indexes' => array(
'cvterm_relationship_idx1' => array(
0 => 'type_id',
),
'cvterm_relationship_idx2' => array(
0 => 'subject_id',
),
'cvterm_relationship_idx3' => array(
0 => 'object_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
'subject_id' => 'cvterm_id',
'object_id' => 'cvterm_id',
),
),
),
'table' => 'cvterm_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cvtermpath()
* Purpose: To describe the structure of 'cvtermpath' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cvtermpath' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cvtermpath() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cvtermpath_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cv_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pathdistance' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'cvtermpath_id',
),
'unique keys' => array(
'cvtermpath_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
3 => 'pathdistance',
),
),
'indexes' => array(
'cvtermpath_idx1' => array(
0 => 'type_id',
),
'cvtermpath_idx2' => array(
0 => 'subject_id',
),
'cvtermpath_idx3' => array(
0 => 'object_id',
),
'cvtermpath_idx4' => array(
0 => 'cv_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
'subject_id' => 'cvterm_id',
'object_id' => 'cvterm_id',
),
),
'cv' => array(
'table' => 'cv',
'columns' => array(
'cv_id' => 'cv_id',
),
),
),
'table' => 'cvtermpath',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cvtermprop()
* Purpose: To describe the structure of 'cvtermprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cvtermprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cvtermprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cvtermprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
'default' => '',
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'cvtermprop_id',
),
'unique keys' => array(
'cvterm_id' => array(
0 => 'cvterm_id',
1 => 'type_id',
2 => 'value',
3 => 'rank',
),
),
'indexes' => array(
'cvtermprop_idx1' => array(
0 => 'cvterm_id',
),
'cvtermprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
'type_id' => 'cvterm_id',
),
),
),
'table' => 'cvtermprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_cvtermsynonym()
* Purpose: To describe the structure of 'cvtermsynonym' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'cvtermsynonym' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_cvtermsynonym() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'cvtermsynonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'synonym' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '1024',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'cvtermsynonym_id',
),
'unique keys' => array(
'cvtermsynonym_c1' => array(
0 => 'cvterm_id',
1 => 'synonym',
),
),
'indexes' => array(
'cvtermsynonym_idx1' => array(
0 => 'cvterm_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
'type_id' => 'cvterm_id',
),
),
),
'table' => 'cvtermsynonym',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_db()
* Purpose: To describe the structure of 'db' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'db' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_db() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'db_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'urlprefix' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'url' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'db_id',
),
'unique keys' => array(
'db_c1' => array(
0 => 'name',
),
),
'foreign keys' => array(
),
'table' => 'db',
'referring_tables' => array(
0 => 'dbxref',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_dbxref()
* Purpose: To describe the structure of 'dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'db_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'accession' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'version' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
'default' => '',
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'dbxref_id',
),
'unique keys' => array(
'dbxref_c1' => array(
0 => 'db_id',
1 => 'accession',
2 => 'version',
),
),
'indexes' => array(
'dbxref_idx1' => array(
0 => 'db_id',
),
'dbxref_idx2' => array(
0 => 'accession',
),
'dbxref_idx3' => array(
0 => 'version',
),
),
'foreign keys' => array(
'db' => array(
'table' => 'db',
'columns' => array(
'db_id' => 'db_id',
),
),
),
'table' => 'dbxref',
'referring_tables' => array(
0 => 'arraydesign',
1 => 'assay',
2 => 'biomaterial',
3 => 'biomaterial_dbxref',
4 => 'cell_line_dbxref',
5 => 'cvterm',
6 => 'cvterm_dbxref',
7 => 'dbxrefprop',
8 => 'element',
9 => 'feature',
10 => 'feature_cvterm_dbxref',
11 => 'feature_dbxref',
12 => 'library_dbxref',
13 => 'nd_experiment_dbxref',
14 => 'nd_experiment_stock_dbxref',
15 => 'organism_dbxref',
16 => 'phylonode_dbxref',
17 => 'phylotree',
18 => 'protocol',
19 => 'pub_dbxref',
20 => 'stock',
21 => 'stock_dbxref',
22 => 'study',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_dbxrefprop()
* Purpose: To describe the structure of 'dbxrefprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'dbxrefprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_dbxrefprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'dbxrefprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
'default' => '',
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'dbxrefprop_id',
),
'unique keys' => array(
'dbxrefprop_c1' => array(
0 => 'dbxref_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'dbxrefprop_idx1' => array(
0 => 'dbxref_id',
),
'dbxrefprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'table' => 'dbxrefprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_eimage()
* Purpose: To describe the structure of 'eimage' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'eimage' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_eimage() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'eimage_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'eimage_data' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'eimage_type' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'image_uri' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'eimage_id',
),
'foreign keys' => array(
),
'table' => 'eimage',
'referring_tables' => array(
0 => 'expression_image',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_element()
* Purpose: To describe the structure of 'element' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'element' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_element() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'element_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'arraydesign_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'element_id',
),
'unique keys' => array(
'element_c1' => array(
0 => 'feature_id',
1 => 'arraydesign_id',
),
),
'indexes' => array(
'element_idx1' => array(
0 => 'feature_id',
),
'element_idx2' => array(
0 => 'arraydesign_id',
),
'element_idx3' => array(
0 => 'type_id',
),
'element_idx4' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'arraydesign' => array(
'table' => 'arraydesign',
'columns' => array(
'arraydesign_id' => 'arraydesign_id',
),
),
),
'table' => 'element',
'referring_tables' => array(
0 => 'element_relationship',
2 => 'elementresult',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_element_relationship()
* Purpose: To describe the structure of 'element_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'element_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_element_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'element_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'element_relationship_id',
),
'unique keys' => array(
'element_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
3 => 'rank',
),
),
'indexes' => array(
'element_relationship_idx1' => array(
0 => 'subject_id',
),
'element_relationship_idx2' => array(
0 => 'type_id',
),
'element_relationship_idx3' => array(
0 => 'object_id',
),
'element_relationship_idx4' => array(
0 => 'value',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'element' => array(
'table' => 'element',
'columns' => array(
'subject_id' => 'element_id',
'object_id' => 'element_id',
),
),
),
'table' => 'element_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_elementresult()
* Purpose: To describe the structure of 'elementresult' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'elementresult' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_elementresult() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'elementresult_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'element_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'quantification_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'signal' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'size' => 'big',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'elementresult_id',
),
'unique keys' => array(
'elementresult_c1' => array(
0 => 'element_id',
1 => 'quantification_id',
),
),
'indexes' => array(
'elementresult_idx1' => array(
0 => 'element_id',
),
'elementresult_idx2' => array(
0 => 'quantification_id',
),
'elementresult_idx3' => array(
0 => 'signal',
),
),
'foreign keys' => array(
'quantification' => array(
'table' => 'quantification',
'columns' => array(
'quantification_id' => 'quantification_id',
),
),
'element' => array(
'table' => 'element',
'columns' => array(
'element_id' => 'element_id',
),
),
),
'table' => 'elementresult',
'referring_tables' => array(
0 => 'elementresult_relationship',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_elementresult_relationship()
* Purpose: To describe the structure of 'elementresult_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'elementresult_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_elementresult_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'elementresult_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'elementresult_relationship_id',
),
'unique keys' => array(
'elementresult_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
3 => 'rank',
),
),
'indexes' => array(
'elementresult_relationship_idx1' => array(
0 => 'subject_id',
),
'elementresult_relationship_idx2' => array(
0 => 'type_id',
),
'elementresult_relationship_idx3' => array(
0 => 'object_id',
),
'elementresult_relationship_idx4' => array(
0 => 'value',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'elementresult' => array(
'table' => 'elementresult',
'columns' => array(
'subject_id' => 'elementresult_id',
'object_id' => 'elementresult_id',
),
),
),
'table' => 'elementresult_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_environment()
* Purpose: To describe the structure of 'environment' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'environment' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_environment() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'environment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'environment_id',
),
'unique keys' => array(
'environment_c1' => array(
0 => 'uniquename',
),
),
'indexes' => array(
'environment_idx1' => array(
0 => 'uniquename',
),
),
'foreign keys' => array(
),
'table' => 'environment',
'referring_tables' => array(
0 => 'environment_cvterm',
1 => 'phendesc',
2 => 'phenotype_comparison',
4 => 'phenstatement',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_environment_cvterm()
* Purpose: To describe the structure of 'environment_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'environment_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_environment_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'environment_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'environment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'environment_cvterm_id',
),
'unique keys' => array(
'environment_cvterm_c1' => array(
0 => 'environment_id',
1 => 'cvterm_id',
),
),
'indexes' => array(
'environment_cvterm_idx1' => array(
0 => 'environment_id',
),
'environment_cvterm_idx2' => array(
0 => 'cvterm_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'environment' => array(
'table' => 'environment',
'columns' => array(
'environment_id' => 'environment_id',
),
),
),
'table' => 'environment_cvterm',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_expression()
* Purpose: To describe the structure of 'expression' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'expression' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_expression() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'md5checksum' => array(
'description' => 'TODO: please describe this field!',
'type' => 'char',
'length' => '32',
'not null' => FALSE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'expression_id',
),
'unique keys' => array(
'expression_c1' => array(
0 => 'uniquename',
),
),
'foreign keys' => array(
),
'table' => 'expression',
'referring_tables' => array(
0 => 'expression_cvterm',
1 => 'expression_image',
2 => 'expression_pub',
3 => 'expressionprop',
4 => 'feature_expression',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_expression_cvterm()
* Purpose: To describe the structure of 'expression_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'expression_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_expression_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'expression_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
'cvterm_type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'expression_cvterm_id',
),
'unique keys' => array(
'expression_cvterm_c1' => array(
0 => 'expression_id',
1 => 'cvterm_id',
2 => 'cvterm_type_id',
),
),
'indexes' => array(
'expression_cvterm_idx1' => array(
0 => 'expression_id',
),
'expression_cvterm_idx2' => array(
0 => 'cvterm_id',
),
'expression_cvterm_idx3' => array(
0 => 'cvterm_type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
'cvterm_type_id' => 'cvterm_id',
),
),
'expression' => array(
'table' => 'expression',
'columns' => array(
'expression_id' => 'expression_id',
),
),
),
'table' => 'expression_cvterm',
'referring_tables' => array(
0 => 'expression_cvtermprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_expression_cvtermprop()
* Purpose: To describe the structure of 'expression_cvtermprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'expression_cvtermprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_expression_cvtermprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'expression_cvtermprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'expression_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'expression_cvtermprop_id',
),
'unique keys' => array(
'expression_cvtermprop_c1' => array(
0 => 'expression_cvterm_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'expression_cvtermprop_idx1' => array(
0 => 'expression_cvterm_id',
),
'expression_cvtermprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'expression_cvterm' => array(
'table' => 'expression_cvterm',
'columns' => array(
'expression_cvterm_id' => 'expression_cvterm_id',
),
),
),
'table' => 'expression_cvtermprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_expression_image()
* Purpose: To describe the structure of 'expression_image' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'expression_image' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_expression_image() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'expression_image_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'eimage_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'expression_image_id',
),
'unique keys' => array(
'expression_image_c1' => array(
0 => 'expression_id',
1 => 'eimage_id',
),
),
'indexes' => array(
'expression_image_idx1' => array(
0 => 'expression_id',
),
'expression_image_idx2' => array(
0 => 'eimage_id',
),
),
'foreign keys' => array(
'expression' => array(
'table' => 'expression',
'columns' => array(
'expression_id' => 'expression_id',
),
),
'eimage' => array(
'table' => 'eimage',
'columns' => array(
'eimage_id' => 'eimage_id',
),
),
),
'table' => 'expression_image',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_expression_pub()
* Purpose: To describe the structure of 'expression_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'expression_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_expression_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'expression_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'expression_pub_id',
),
'unique keys' => array(
'expression_pub_c1' => array(
0 => 'expression_id',
1 => 'pub_id',
),
),
'indexes' => array(
'expression_pub_idx1' => array(
0 => 'expression_id',
),
'expression_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'expression' => array(
'table' => 'expression',
'columns' => array(
'expression_id' => 'expression_id',
),
),
),
'table' => 'expression_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_expressionprop()
* Purpose: To describe the structure of 'expressionprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'expressionprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_expressionprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'expressionprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'expressionprop_id',
),
'unique keys' => array(
'expressionprop_c1' => array(
0 => 'expression_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'expressionprop_idx1' => array(
0 => 'expression_id',
),
'expressionprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'expression' => array(
'table' => 'expression',
'columns' => array(
'expression_id' => 'expression_id',
),
),
),
'table' => 'expressionprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature()
* Purpose: To describe the structure of 'feature' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'residues' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'seqlen' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'md5checksum' => array(
'description' => 'TODO: please describe this field!',
'type' => 'char',
'length' => '32',
'not null' => FALSE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_analysis' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'is_obsolete' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'timeaccessioned' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => TRUE,
'default' => 'ow(',
),
'timelastmodified' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => TRUE,
'default' => 'ow(',
),
),
'primary key' => array(
0 => 'feature_id',
),
'unique keys' => array(
'feature_c1' => array(
0 => 'organism_id',
1 => 'uniquename',
2 => 'type_id',
),
),
'indexes' => array(
'feature_idx1' => array(
0 => 'dbxref_id',
),
'feature_idx2' => array(
0 => 'organism_id',
),
'feature_idx3' => array(
0 => 'type_id',
),
'feature_idx4' => array(
0 => 'uniquename',
),
'feature_name_ind1' => array(
0 => 'name',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'table' => 'feature',
'referring_tables' => array(
0 => 'analysisfeature',
1 => 'cell_line_feature',
2 => 'element',
3 => 'feature_cvterm',
4 => 'feature_dbxref',
5 => 'feature_expression',
6 => 'feature_genotype',
8 => 'feature_phenotype',
9 => 'feature_pub',
10 => 'feature_relationship',
12 => 'feature_synonym',
13 => 'featureloc',
15 => 'featurepos',
17 => 'featureprop',
18 => 'featurerange',
23 => 'library_feature',
24 => 'phylonode',
25 => 'studyprop_feature',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_cvterm()
* Purpose: To describe the structure of 'feature_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_not' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'feature_cvterm_id',
),
'unique keys' => array(
'feature_cvterm_c1' => array(
0 => 'feature_id',
1 => 'cvterm_id',
2 => 'pub_id',
3 => 'rank',
),
),
'indexes' => array(
'feature_cvterm_idx1' => array(
0 => 'feature_id',
),
'feature_cvterm_idx2' => array(
0 => 'cvterm_id',
),
'feature_cvterm_idx3' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
),
'table' => 'feature_cvterm',
'referring_tables' => array(
0 => 'feature_cvterm_dbxref',
1 => 'feature_cvterm_pub',
2 => 'feature_cvtermprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_cvterm_dbxref()
* Purpose: To describe the structure of 'feature_cvterm_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_cvterm_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_cvterm_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_cvterm_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_cvterm_dbxref_id',
),
'unique keys' => array(
'feature_cvterm_dbxref_c1' => array(
0 => 'feature_cvterm_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'feature_cvterm_dbxref_idx1' => array(
0 => 'feature_cvterm_id',
),
'feature_cvterm_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'feature_cvterm' => array(
'table' => 'feature_cvterm',
'columns' => array(
'feature_cvterm_id' => 'feature_cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'table' => 'feature_cvterm_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_cvterm_pub()
* Purpose: To describe the structure of 'feature_cvterm_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_cvterm_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_cvterm_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_cvterm_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_cvterm_pub_id',
),
'unique keys' => array(
'feature_cvterm_pub_c1' => array(
0 => 'feature_cvterm_id',
1 => 'pub_id',
),
),
'indexes' => array(
'feature_cvterm_pub_idx1' => array(
0 => 'feature_cvterm_id',
),
'feature_cvterm_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'feature_cvterm' => array(
'table' => 'feature_cvterm',
'columns' => array(
'feature_cvterm_id' => 'feature_cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'feature_cvterm_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_cvtermprop()
* Purpose: To describe the structure of 'feature_cvtermprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_cvtermprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_cvtermprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_cvtermprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'feature_cvtermprop_id',
),
'unique keys' => array(
'feature_cvtermprop_c1' => array(
0 => 'feature_cvterm_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'feature_cvtermprop_idx1' => array(
0 => 'feature_cvterm_id',
),
'feature_cvtermprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature_cvterm' => array(
'table' => 'feature_cvterm',
'columns' => array(
'feature_cvterm_id' => 'feature_cvterm_id',
),
),
),
'table' => 'feature_cvtermprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_dbxref()
* Purpose: To describe the structure of 'feature_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'ru',
),
),
'primary key' => array(
0 => 'feature_dbxref_id',
),
'unique keys' => array(
'feature_dbxref_c1' => array(
0 => 'feature_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'feature_dbxref_idx1' => array(
0 => 'feature_id',
),
'feature_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
),
'table' => 'feature_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_expression()
* Purpose: To describe the structure of 'feature_expression' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_expression' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_expression() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_expression_id',
),
'unique keys' => array(
'feature_expression_c1' => array(
0 => 'expression_id',
1 => 'feature_id',
2 => 'pub_id',
),
),
'indexes' => array(
'feature_expression_idx1' => array(
0 => 'expression_id',
),
'feature_expression_idx2' => array(
0 => 'feature_id',
),
'feature_expression_idx3' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'expression' => array(
'table' => 'expression',
'columns' => array(
'expression_id' => 'expression_id',
),
),
),
'table' => 'feature_expression',
'referring_tables' => array(
0 => 'feature_expressionprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_expressionprop()
* Purpose: To describe the structure of 'feature_expressionprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_expressionprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_expressionprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_expressionprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_expression_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'feature_expressionprop_id',
),
'unique keys' => array(
'feature_expressionprop_c1' => array(
0 => 'feature_expression_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'feature_expressionprop_idx1' => array(
0 => 'feature_expression_id',
),
'feature_expressionprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature_expression' => array(
'table' => 'feature_expression',
'columns' => array(
'feature_expression_id' => 'feature_expression_id',
),
),
),
'table' => 'feature_expressionprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_genotype()
* Purpose: To describe the structure of 'feature_genotype' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_genotype' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_genotype() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'chromosome_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cgroup' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_genotype_id',
),
'unique keys' => array(
'feature_genotype_c1' => array(
0 => 'feature_id',
1 => 'genotype_id',
2 => 'cvterm_id',
3 => 'chromosome_id',
4 => 'rank',
5 => 'cgroup',
),
),
'indexes' => array(
'feature_genotype_idx1' => array(
0 => 'feature_id',
),
'feature_genotype_idx2' => array(
0 => 'genotype_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
'chromosome_id' => 'feature_id',
),
),
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype_id' => 'genotype_id',
),
),
),
'table' => 'feature_genotype',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_phenotype()
* Purpose: To describe the structure of 'feature_phenotype' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_phenotype' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_phenotype() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_phenotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'phenotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_phenotype_id',
),
'unique keys' => array(
'feature_phenotype_c1' => array(
0 => 'feature_id',
1 => 'phenotype_id',
),
),
'indexes' => array(
'feature_phenotype_idx1' => array(
0 => 'feature_id',
),
'feature_phenotype_idx2' => array(
0 => 'phenotype_id',
),
),
'foreign keys' => array(
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'phenotype' => array(
'table' => 'phenotype',
'columns' => array(
'phenotype_id' => 'phenotype_id',
),
),
),
'table' => 'feature_phenotype',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_pub()
* Purpose: To describe the structure of 'feature_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_pub_id',
),
'unique keys' => array(
'feature_pub_c1' => array(
0 => 'feature_id',
1 => 'pub_id',
),
),
'indexes' => array(
'feature_pub_idx1' => array(
0 => 'feature_id',
),
'feature_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
),
'table' => 'feature_pub',
'referring_tables' => array(
0 => 'feature_pubprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_pubprop()
* Purpose: To describe the structure of 'feature_pubprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_pubprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_pubprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_pubprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'feature_pubprop_id',
),
'unique keys' => array(
'feature_pubprop_c1' => array(
0 => 'feature_pub_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'feature_pubprop_idx1' => array(
0 => 'feature_pub_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature_pub' => array(
'table' => 'feature_pub',
'columns' => array(
'feature_pub_id' => 'feature_pub_id',
),
),
),
'table' => 'feature_pubprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_relationship()
* Purpose: To describe the structure of 'feature_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'feature_relationship_id',
),
'unique keys' => array(
'feature_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
3 => 'rank',
),
),
'indexes' => array(
'feature_relationship_idx1' => array(
0 => 'subject_id',
),
'feature_relationship_idx2' => array(
0 => 'object_id',
),
'feature_relationship_idx3' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'subject_id' => 'feature_id',
'object_id' => 'feature_id',
),
),
),
'table' => 'feature_relationship',
'referring_tables' => array(
0 => 'feature_relationship_pub',
1 => 'feature_relationshipprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_relationship_pub()
* Purpose: To describe the structure of 'feature_relationship_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_relationship_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_relationship_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_relationship_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_relationship_pub_id',
),
'unique keys' => array(
'feature_relationship_pub_c1' => array(
0 => 'feature_relationship_id',
1 => 'pub_id',
),
),
'indexes' => array(
'feature_relationship_pub_idx1' => array(
0 => 'feature_relationship_id',
),
'feature_relationship_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'feature_relationship' => array(
'table' => 'feature_relationship',
'columns' => array(
'feature_relationship_id' => 'feature_relationship_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'feature_relationship_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_relationshipprop()
* Purpose: To describe the structure of 'feature_relationshipprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_relationshipprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_relationshipprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_relationshipprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'feature_relationshipprop_id',
),
'unique keys' => array(
'feature_relationshipprop_c1' => array(
0 => 'feature_relationship_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'feature_relationshipprop_idx1' => array(
0 => 'feature_relationship_id',
),
'feature_relationshipprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature_relationship' => array(
'table' => 'feature_relationship',
'columns' => array(
'feature_relationship_id' => 'feature_relationship_id',
),
),
),
'table' => 'feature_relationshipprop',
'referring_tables' => array(
0 => 'feature_relationshipprop_pub',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_relationshipprop_pub()
* Purpose: To describe the structure of 'feature_relationshipprop_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_relationshipprop_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_relationshipprop_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_relationshipprop_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_relationshipprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'feature_relationshipprop_pub_id',
),
'unique keys' => array(
'feature_relationshipprop_pub_c1' => array(
0 => 'feature_relationshipprop_id',
1 => 'pub_id',
),
),
'indexes' => array(
'feature_relationshipprop_pub_idx1' => array(
0 => 'feature_relationshipprop_id',
),
'feature_relationshipprop_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'feature_relationshipprop' => array(
'table' => 'feature_relationshipprop',
'columns' => array(
'feature_relationshipprop_id' => 'feature_relationshipprop_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'feature_relationshipprop_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_feature_synonym()
* Purpose: To describe the structure of 'feature_synonym' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'feature_synonym' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_feature_synonym() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'feature_synonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'synonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'is_internal' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
),
'primary key' => array(
0 => 'feature_synonym_id',
),
'unique keys' => array(
'feature_synonym_c1' => array(
0 => 'synonym_id',
1 => 'feature_id',
2 => 'pub_id',
),
),
'indexes' => array(
'feature_synonym_idx1' => array(
0 => 'synonym_id',
),
'feature_synonym_idx2' => array(
0 => 'feature_id',
),
'feature_synonym_idx3' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'synonym' => array(
'table' => 'synonym',
'columns' => array(
'synonym_id' => 'synonym_id',
),
),
),
'table' => 'feature_synonym',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featureloc()
* Purpose: To describe the structure of 'featureloc' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featureloc' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featureloc() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featureloc_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'srcfeature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'fmin' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'is_fmin_partial' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'fmax' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'is_fmax_partial' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'strand' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'size' => 'small',
'not null' => FALSE,
),
'phase' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'residue_info' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'locgroup' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'featureloc_id',
),
'unique keys' => array(
'featureloc_c1' => array(
0 => 'feature_id',
1 => 'locgroup',
2 => 'rank',
),
),
'indexes' => array(
'binloc_boxrange' => array(
0 => 'fmin',
),
'binloc_boxrange_src' => array(
0 => 'srcfeature_id',
1 => 'fmin',
),
'featureloc_idx1' => array(
0 => 'feature_id',
),
'featureloc_idx2' => array(
0 => 'srcfeature_id',
),
'featureloc_idx3' => array(
0 => 'srcfeature_id',
1 => 'fmin',
2 => 'fmax',
),
),
'foreign keys' => array(
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
'srcfeature_id' => 'feature_id',
),
),
),
'referring_tables' => array(
0 => 'featureloc_pub',
),
'table' => 'featureloc',
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featureloc_pub()
* Purpose: To describe the structure of 'featureloc_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featureloc_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featureloc_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featureloc_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'featureloc_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'featureloc_pub_id',
),
'unique keys' => array(
'featureloc_pub_c1' => array(
0 => 'featureloc_id',
1 => 'pub_id',
),
),
'indexes' => array(
'featureloc_pub_idx1' => array(
0 => 'featureloc_id',
),
'featureloc_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'featureloc' => array(
'table' => 'featureloc',
'columns' => array(
'featureloc_id' => 'featureloc_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'featureloc_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featuremap()
* Purpose: To describe the structure of 'featuremap' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featuremap' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featuremap() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featuremap_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'unittype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'featuremap_id',
),
'unique keys' => array(
'featuremap_c1' => array(
0 => 'name',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'unittype_id' => 'cvterm_id',
),
),
),
'table' => 'featuremap',
'referring_tables' => array(
0 => 'featuremap_pub',
1 => 'featurepos',
2 => 'featurerange',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featuremap_pub()
* Purpose: To describe the structure of 'featuremap_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featuremap_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featuremap_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featuremap_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'featuremap_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'featuremap_pub_id',
),
'indexes' => array(
'featuremap_pub_idx1' => array(
0 => 'featuremap_id',
),
'featuremap_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'featuremap' => array(
'table' => 'featuremap',
'columns' => array(
'featuremap_id' => 'featuremap_id',
),
),
),
'table' => 'featuremap_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featurepos()
* Purpose: To describe the structure of 'featurepos' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featurepos' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featurepos() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featurepos_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'featuremap_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'map_feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'mappos' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'size' => 'big',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'featurepos_id',
),
'indexes' => array(
'featurepos_idx1' => array(
0 => 'featuremap_id',
),
'featurepos_idx2' => array(
0 => 'feature_id',
),
'featurepos_idx3' => array(
0 => 'map_feature_id',
),
),
'foreign keys' => array(
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
'map_feature_id' => 'feature_id',
),
),
'featuremap' => array(
'table' => 'featuremap',
'columns' => array(
'featuremap_id' => 'featuremap_id',
),
),
),
'table' => 'featurepos',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featureprop()
* Purpose: To describe the structure of 'featureprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featureprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featureprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featureprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'featureprop_id',
),
'unique keys' => array(
'featureprop_c1' => array(
0 => 'feature_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'featureprop_idx1' => array(
0 => 'feature_id',
),
'featureprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
),
'table' => 'featureprop',
'referring_tables' => array(
0 => 'featureprop_pub',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featureprop_pub()
* Purpose: To describe the structure of 'featureprop_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featureprop_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featureprop_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featureprop_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'featureprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'featureprop_pub_id',
),
'unique keys' => array(
'featureprop_pub_c1' => array(
0 => 'featureprop_id',
1 => 'pub_id',
),
),
'indexes' => array(
'featureprop_pub_idx1' => array(
0 => 'featureprop_id',
),
'featureprop_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'featureprop' => array(
'table' => 'featureprop',
'columns' => array(
'featureprop_id' => 'featureprop_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'featureprop_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_featurerange()
* Purpose: To describe the structure of 'featurerange' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'featurerange' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_featurerange() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'featurerange_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'featuremap_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'leftstartf_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'leftendf_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'rightstartf_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'rightendf_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rangestr' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'featurerange_id',
),
'indexes' => array(
'featurerange_idx1' => array(
0 => 'featuremap_id',
),
'featurerange_idx2' => array(
0 => 'feature_id',
),
'featurerange_idx3' => array(
0 => 'leftstartf_id',
),
'featurerange_idx4' => array(
0 => 'leftendf_id',
),
'featurerange_idx5' => array(
0 => 'rightstartf_id',
),
'featurerange_idx6' => array(
0 => 'rightendf_id',
),
),
'foreign keys' => array(
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
'leftstartf_id' => 'feature_id',
'leftendf_id' => 'feature_id',
'rightstartf_id' => 'feature_id',
'rightendf_id' => 'feature_id',
),
),
'featuremap' => array(
'table' => 'featuremap',
'columns' => array(
'featuremap_id' => 'featuremap_id',
),
),
),
'table' => 'featurerange',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_genotype()
* Purpose: To describe the structure of 'genotype' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'genotype' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_genotype() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'genotype_id',
),
'unique keys' => array(
'genotype_c1' => array(
0 => 'uniquename',
),
),
'indexes' => array(
'genotype_idx1' => array(
0 => 'uniquename',
),
'genotype_idx2' => array(
0 => 'name',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'genotype',
'referring_tables' => array(
0 => 'feature_genotype',
1 => 'genotypeprop',
9 => 'nd_experiment_genotype',
10 => 'phendesc',
11 => 'phenotype_comparison',
13 => 'phenstatement',
14 => 'stock_genotype',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_genotypeprop()
* Purpose: To describe the structure of 'genotypeprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'genotypeprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_genotypeprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'genotypeprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'genotypeprop_id',
),
'unique keys' => array(
'genotypeprop_c1' => array(
0 => 'genotype_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'genotypeprop_idx1' => array(
0 => 'genotype_id',
),
'genotypeprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype_id' => 'genotype_id',
),
),
),
'table' => 'genotypeprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_library()
* Purpose: To describe the structure of 'library' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'library' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_library() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_obsolete' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
'timeaccessioned' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => TRUE,
'default' => 'ow(',
),
'timelastmodified' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => TRUE,
'default' => 'ow(',
),
),
'primary key' => array(
0 => 'library_id',
),
'unique keys' => array(
'library_c1' => array(
0 => 'organism_id',
1 => 'uniquename',
2 => 'type_id',
),
),
'indexes' => array(
'library_idx1' => array(
0 => 'organism_id',
),
'library_idx2' => array(
0 => 'type_id',
),
'library_idx3' => array(
0 => 'uniquename',
),
'library_name_ind1' => array(
0 => 'name',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
0 => 'cell_line_library',
1 => 'library_cvterm',
2 => 'library_dbxref',
3 => 'library_feature',
4 => 'library_pub',
5 => 'library_synonym',
6 => 'libraryprop',
),
'table' => 'library',
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_library_cvterm()
* Purpose: To describe the structure of 'library_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'library_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_library_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'library_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'library_cvterm_id',
),
'unique keys' => array(
'library_cvterm_c1' => array(
0 => 'library_id',
1 => 'cvterm_id',
2 => 'pub_id',
),
),
'indexes' => array(
'library_cvterm_idx1' => array(
0 => 'library_id',
),
'library_cvterm_idx2' => array(
0 => 'cvterm_id',
),
'library_cvterm_idx3' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'library' => array(
'table' => 'library',
'columns' => array(
'library_id' => 'library_id',
),
),
),
'table' => 'library_cvterm',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_library_dbxref()
* Purpose: To describe the structure of 'library_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'library_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_library_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'library_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'ru',
),
),
'primary key' => array(
0 => 'library_dbxref_id',
),
'unique keys' => array(
'library_dbxref_c1' => array(
0 => 'library_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'library_dbxref_idx1' => array(
0 => 'library_id',
),
'library_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'library' => array(
'table' => 'library',
'columns' => array(
'library_id' => 'library_id',
),
),
),
'table' => 'library_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_library_feature()
* Purpose: To describe the structure of 'library_feature' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'library_feature' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_library_feature() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'library_feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'library_feature_id',
),
'unique keys' => array(
'library_feature_c1' => array(
0 => 'library_id',
1 => 'feature_id',
),
),
'indexes' => array(
'library_feature_idx1' => array(
0 => 'library_id',
),
'library_feature_idx2' => array(
0 => 'feature_id',
),
),
'foreign keys' => array(
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'library' => array(
'table' => 'library',
'columns' => array(
'library_id' => 'library_id',
),
),
),
'table' => 'library_feature',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_library_pub()
* Purpose: To describe the structure of 'library_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'library_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_library_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'library_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'library_pub_id',
),
'unique keys' => array(
'library_pub_c1' => array(
0 => 'library_id',
1 => 'pub_id',
),
),
'indexes' => array(
'library_pub_idx1' => array(
0 => 'library_id',
),
'library_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'library' => array(
'table' => 'library',
'columns' => array(
'library_id' => 'library_id',
),
),
),
'table' => 'library_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_library_synonym()
* Purpose: To describe the structure of 'library_synonym' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'library_synonym' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_library_synonym() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'library_synonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'synonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'ru',
),
'is_internal' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
),
'primary key' => array(
0 => 'library_synonym_id',
),
'unique keys' => array(
'library_synonym_c1' => array(
0 => 'synonym_id',
1 => 'library_id',
2 => 'pub_id',
),
),
'indexes' => array(
'library_synonym_idx1' => array(
0 => 'synonym_id',
),
'library_synonym_idx2' => array(
0 => 'library_id',
),
'library_synonym_idx3' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'synonym' => array(
'table' => 'synonym',
'columns' => array(
'synonym_id' => 'synonym_id',
),
),
'library' => array(
'table' => 'library',
'columns' => array(
'library_id' => 'library_id',
),
),
),
'table' => 'library_synonym',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_libraryprop()
* Purpose: To describe the structure of 'libraryprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'libraryprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_libraryprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'libraryprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'library_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'libraryprop_id',
),
'unique keys' => array(
'libraryprop_c1' => array(
0 => 'library_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'libraryprop_idx1' => array(
0 => 'library_id',
),
'libraryprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'library' => array(
'table' => 'library',
'columns' => array(
'library_id' => 'library_id',
),
),
),
'table' => 'libraryprop',
'referring_tables' => array(
0 => 'libraryprop_pub',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_libraryprop_pub()
* Purpose: To describe the structure of 'libraryprop_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'libraryprop_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_libraryprop_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'libraryprop_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'libraryprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'libraryprop_pub_id',
),
'unique keys' => array(
'libraryprop_pub_c1' => array(
0 => 'libraryprop_id',
1 => 'pub_id',
),
),
'indexes' => array(
'libraryprop_pub_idx1' => array(
0 => 'libraryprop_id',
),
'libraryprop_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'libraryprop' => array(
'table' => 'libraryprop',
'columns' => array(
'libraryprop_id' => 'libraryprop_id',
),
),
),
'table' => 'libraryprop_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_magedocumentation()
* Purpose: To describe the structure of 'magedocumentation' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'magedocumentation' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_magedocumentation() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'magedocumentation_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'mageml_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'tableinfo_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'row_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'mageidentifier' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'magedocumentation_id',
),
'indexes' => array(
'magedocumentation_idx1' => array(
0 => 'mageml_id',
),
'magedocumentation_idx2' => array(
0 => 'tableinfo_id',
),
'magedocumentation_idx3' => array(
0 => 'row_id',
),
),
'foreign keys' => array(
'tableinfo' => array(
'table' => 'tableinfo',
'columns' => array(
'tableinfo_id' => 'tableinfo_id',
),
),
'mageml' => array(
'table' => 'mageml',
'columns' => array(
'mageml_id' => 'mageml_id',
),
),
),
'table' => 'magedocumentation',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_mageml()
* Purpose: To describe the structure of 'mageml' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'mageml' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_mageml() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'mageml_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'mage_package' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'mage_ml' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'mageml_id',
),
'foreign keys' => array(
),
'table' => 'mageml',
'referring_tables' => array(
0 => 'magedocumentation',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment()
* Purpose: To describe the structure of 'nd_experiment' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_geolocation_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_id',
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_geolocation' => array(
'table' => 'nd_geolocation',
'columns' => array(
'nd_geolocation_id' => 'nd_geolocation_id',
),
),
),
'table' => 'nd_experiment',
'referring_tables' => array(
0 => 'nd_experiment_contact',
1 => 'nd_experiment_dbxref',
2 => 'nd_experiment_genotype',
3 => 'nd_experiment_phenotype',
4 => 'nd_experiment_project',
5 => 'nd_experiment_protocol',
6 => 'nd_experiment_pub',
7 => 'nd_experiment_stock',
8 => 'nd_experimentprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_contact()
* Purpose: To describe the structure of 'nd_experiment_contact' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_contact' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_contact() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_contact_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'contact_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_contact_id',
),
'foreign keys' => array(
'contact' => array(
'table' => 'contact',
'columns' => array(
'contact_id' => 'contact_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experiment_contact',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_dbxref()
* Purpose: To describe the structure of 'nd_experiment_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_dbxref_id',
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experiment_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_genotype()
* Purpose: To describe the structure of 'nd_experiment_genotype' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_genotype' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_genotype() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_genotype_id',
),
'unique keys' => array(
'nd_experiment_genotype_c1' => array(
0 => 'nd_experiment_id',
1 => 'genotype_id',
),
),
'foreign keys' => array(
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype_id' => 'genotype_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experiment_genotype',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_phenotype()
* Purpose: To describe the structure of 'nd_experiment_phenotype' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_phenotype' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_phenotype() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_phenotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'phenotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_phenotype_id',
),
'unique keys' => array(
'nd_experiment_phenotype_c1' => array(
0 => 'nd_experiment_id',
1 => 'phenotype_id',
),
),
'foreign keys' => array(
'phenotype' => array(
'table' => 'phenotype',
'columns' => array(
'phenotype_id' => 'phenotype_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experiment_phenotype',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_project()
* Purpose: To describe the structure of 'nd_experiment_project' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_project' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_project() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_project_id',
),
'foreign keys' => array(
'project' => array(
'table' => 'project',
'columns' => array(
'project_id' => 'project_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experiment_project',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_protocol()
* Purpose: To describe the structure of 'nd_experiment_protocol' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_protocol' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_protocol() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'nd_protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_protocol_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'nd_protocol' => array(
'table' => 'nd_protocol',
'columns' => array(
'nd_protocol_id' => 'nd_protocol_id',
),
),
),
'table' => 'nd_experiment_protocol',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_pub()
* Purpose: To describe the structure of 'nd_experiment_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_pub_id',
),
'unique keys' => array(
'nd_experiment_pub_c1' => array(
0 => 'nd_experiment_id',
1 => 'pub_id',
),
),
'indexes' => array(
'nd_experiment_pub_idx1' => array(
0 => 'nd_experiment_id',
),
'nd_experiment_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experiment_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_stock()
* Purpose: To describe the structure of 'nd_experiment_stock' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_stock' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_stock() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_stock_id',
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experiment_stock',
'referring_tables' => array(
0 => 'nd_experiment_stock_dbxref',
1 => 'nd_experiment_stockprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_stock_dbxref()
* Purpose: To describe the structure of 'nd_experiment_stock_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_stock_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_stock_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_stock_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_experiment_stock_dbxref_id',
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'nd_experiment_stock' => array(
'table' => 'nd_experiment_stock',
'columns' => array(
'nd_experiment_stock_id' => 'nd_experiment_stock_id',
),
),
),
'table' => 'nd_experiment_stock_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experiment_stockprop()
* Purpose: To describe the structure of 'nd_experiment_stockprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experiment_stockprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experiment_stockprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experiment_stockprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'nd_experiment_stockprop_id',
),
'unique keys' => array(
'nd_experiment_stockprop_c1' => array(
0 => 'nd_experiment_stock_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_experiment_stock' => array(
'table' => 'nd_experiment_stock',
'columns' => array(
'nd_experiment_stock_id' => 'nd_experiment_stock_id',
),
),
),
'table' => 'nd_experiment_stockprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_experimentprop()
* Purpose: To describe the structure of 'nd_experimentprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_experimentprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_experimentprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_experimentprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_experiment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'nd_experimentprop_id',
),
'unique keys' => array(
'nd_experimentprop_c1' => array(
0 => 'nd_experiment_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
),
'table' => 'nd_experimentprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_geolocation()
* Purpose: To describe the structure of 'nd_geolocation' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_geolocation' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_geolocation() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_geolocation_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'latitude' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'not null' => FALSE,
),
'longitude' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'not null' => FALSE,
),
'geodetic_datum' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '32',
'not null' => FALSE,
),
'altitude' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'nd_geolocation_id',
),
'foreign keys' => array(
),
'table' => 'nd_geolocation',
'referring_tables' => array(
0 => 'nd_experiment',
1 => 'nd_geolocationprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_geolocationprop()
* Purpose: To describe the structure of 'nd_geolocationprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_geolocationprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_geolocationprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_geolocationprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_geolocation_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'nd_geolocationprop_id',
),
'unique keys' => array(
'nd_geolocationprop_c1' => array(
0 => 'nd_geolocation_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_geolocation' => array(
'table' => 'nd_geolocation',
'columns' => array(
'nd_geolocation_id' => 'nd_geolocation_id',
),
),
),
'table' => 'nd_geolocationprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_protocol()
* Purpose: To describe the structure of 'nd_protocol' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_protocol' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_protocol() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_protocol_id',
),
'unique keys' => array(
'name' => array(
0 => 'name',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'nd_protocol',
'referring_tables' => array(
0 => 'nd_experiment_protocol',
1 => 'nd_protocol_reagent',
2 => 'nd_protocolprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_protocol_reagent()
* Purpose: To describe the structure of 'nd_protocol_reagent' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_protocol_reagent' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_protocol_reagent() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_protocol_reagent_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'reagent_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_protocol_reagent_id',
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_protocol' => array(
'table' => 'nd_protocol',
'columns' => array(
'nd_protocol_id' => 'nd_protocol_id',
),
),
'nd_reagent' => array(
'table' => 'nd_reagent',
'columns' => array(
'reagent_id' => 'nd_reagent_id',
),
),
),
'table' => 'nd_protocol_reagent',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_protocolprop()
* Purpose: To describe the structure of 'nd_protocolprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_protocolprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_protocolprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_protocolprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'nd_protocolprop_id',
),
'unique keys' => array(
'nd_protocolprop_c1' => array(
0 => 'nd_protocol_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_protocol' => array(
'table' => 'nd_protocol',
'columns' => array(
'nd_protocol_id' => 'nd_protocol_id',
),
),
),
'table' => 'nd_protocolprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_reagent()
* Purpose: To describe the structure of 'nd_reagent' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_reagent' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_reagent() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_reagent_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '80',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'nd_reagent_id',
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'nd_reagent',
'referring_tables' => array(
0 => 'nd_protocol_reagent',
1 => 'nd_reagent_relationship',
3 => 'nd_reagentprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_reagent_relationship()
* Purpose: To describe the structure of 'nd_reagent_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_reagent_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_reagent_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_reagent_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_reagent_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_reagent_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'nd_reagent_relationship_id',
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_reagent' => array(
'table' => 'nd_reagent',
'columns' => array(
'subject_reagent_id' => 'nd_reagent_id',
'object_reagent_id' => 'nd_reagent_id',
),
),
),
'table' => 'nd_reagent_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_nd_reagentprop()
* Purpose: To describe the structure of 'nd_reagentprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'nd_reagentprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_nd_reagentprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'nd_reagentprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'nd_reagent_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'nd_reagentprop_id',
),
'unique keys' => array(
'nd_reagentprop_c1' => array(
0 => 'nd_reagent_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'nd_reagent' => array(
'table' => 'nd_reagent',
'columns' => array(
'nd_reagent_id' => 'nd_reagent_id',
),
),
),
'table' => 'nd_reagentprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_organism()
* Purpose: To describe the structure of 'organism' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'organism' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_organism() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'abbreviation' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'genus' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'species' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'common_name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'comment' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'organism_id',
),
'unique keys' => array(
'organism_c1' => array(
0 => 'genus',
1 => 'species',
),
),
'foreign keys' => array(
),
'referring_tables' => array(
0 => 'biomaterial',
1 => 'cell_line',
2 => 'feature',
3 => 'library',
4 => 'organism_dbxref',
5 => 'organismprop',
6 => 'phenotype_comparison',
7 => 'phylonode_organism',
8 => 'stock',
),
'table' => 'organism',
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_organism_dbxref()
* Purpose: To describe the structure of 'organism_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'organism_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_organism_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'organism_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'organism_dbxref_id',
),
'unique keys' => array(
'organism_dbxref_c1' => array(
0 => 'organism_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'organism_dbxref_idx1' => array(
0 => 'organism_id',
),
'organism_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'table' => 'organism_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_organismprop()
* Purpose: To describe the structure of 'organismprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'organismprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_organismprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'organismprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'organismprop_id',
),
'unique keys' => array(
'organismprop_c1' => array(
0 => 'organism_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'organismprop_idx1' => array(
0 => 'organism_id',
),
'organismprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'organismprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phendesc()
* Purpose: To describe the structure of 'phendesc' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phendesc' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phendesc() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phendesc_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'environment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phendesc_id',
),
'unique keys' => array(
'phendesc_c1' => array(
0 => 'genotype_id',
1 => 'environment_id',
2 => 'type_id',
3 => 'pub_id',
),
),
'indexes' => array(
'phendesc_idx1' => array(
0 => 'genotype_id',
),
'phendesc_idx2' => array(
0 => 'environment_id',
),
'phendesc_idx3' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype_id' => 'genotype_id',
),
),
'environment' => array(
'table' => 'environment',
'columns' => array(
'environment_id' => 'environment_id',
),
),
),
'table' => 'phendesc',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phenotype()
* Purpose: To describe the structure of 'phenotype' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phenotype' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phenotype() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phenotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'observable_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'attr_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'cvalue_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'phenotype_id',
),
'unique keys' => array(
'phenotype_c1' => array(
0 => 'uniquename',
),
),
'indexes' => array(
'phenotype_idx1' => array(
0 => 'cvalue_id',
),
'phenotype_idx2' => array(
0 => 'observable_id',
),
'phenotype_idx3' => array(
0 => 'attr_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'observable_id' => 'cvterm_id',
'attr_id' => 'cvterm_id',
'cvalue_id' => 'cvterm_id',
'assay_id' => 'cvterm_id',
),
),
),
'table' => 'phenotype',
'referring_tables' => array(
0 => 'feature_phenotype',
1 => 'nd_experiment_phenotype',
2 => 'phenotype_comparison',
4 => 'phenotype_cvterm',
5 => 'phenstatement',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phenotype_comparison()
* Purpose: To describe the structure of 'phenotype_comparison' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phenotype_comparison' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phenotype_comparison() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phenotype_comparison_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'genotype1_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'environment1_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'genotype2_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'environment2_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'phenotype1_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'phenotype2_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phenotype_comparison_id',
),
'unique keys' => array(
'phenotype_comparison_c1' => array(
0 => 'genotype1_id',
1 => 'environment1_id',
2 => 'genotype2_id',
3 => 'environment2_id',
4 => 'phenotype1_id',
5 => 'pub_id',
),
),
'indexes' => array(
'phenotype_comparison_idx1' => array(
0 => 'genotype1_id',
),
'phenotype_comparison_idx2' => array(
0 => 'genotype2_id',
),
'phenotype_comparison_idx4' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype1_id' => 'genotype_id',
'genotype2_id' => 'genotype_id',
),
),
'environment' => array(
'table' => 'environment',
'columns' => array(
'environment1_id' => 'environment_id',
'environment2_id' => 'environment_id',
),
),
'phenotype' => array(
'table' => 'phenotype',
'columns' => array(
'phenotype1_id' => 'phenotype_id',
'phenotype2_id' => 'phenotype_id',
),
),
),
'table' => 'phenotype_comparison',
'referring_tables' => array(
0 => 'phenotype_comparison_cvterm',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phenotype_comparison_cvterm()
* Purpose: To describe the structure of 'phenotype_comparison_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phenotype_comparison_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phenotype_comparison_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phenotype_comparison_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phenotype_comparison_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'phenotype_comparison_cvterm_id',
),
'unique keys' => array(
'phenotype_comparison_cvterm_c1' => array(
0 => 'phenotype_comparison_id',
1 => 'cvterm_id',
),
),
'indexes' => array(
'phenotype_comparison_cvterm_idx1' => array(
0 => 'phenotype_comparison_id',
),
'phenotype_comparison_cvterm_idx2' => array(
0 => 'cvterm_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'phenotype_comparison' => array(
'table' => 'phenotype_comparison',
'columns' => array(
'phenotype_comparison_id' => 'phenotype_comparison_id',
),
),
),
'table' => 'phenotype_comparison_cvterm',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phenotype_cvterm()
* Purpose: To describe the structure of 'phenotype_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phenotype_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phenotype_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phenotype_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phenotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'phenotype_cvterm_id',
),
'unique keys' => array(
'phenotype_cvterm_c1' => array(
0 => 'phenotype_id',
1 => 'cvterm_id',
2 => 'rank',
),
),
'indexes' => array(
'phenotype_cvterm_idx1' => array(
0 => 'phenotype_id',
),
'phenotype_cvterm_idx2' => array(
0 => 'cvterm_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'phenotype' => array(
'table' => 'phenotype',
'columns' => array(
'phenotype_id' => 'phenotype_id',
),
),
),
'table' => 'phenotype_cvterm',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phenstatement()
* Purpose: To describe the structure of 'phenstatement' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phenstatement' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phenstatement() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phenstatement_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'environment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'phenotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phenstatement_id',
),
'unique keys' => array(
'phenstatement_c1' => array(
0 => 'genotype_id',
1 => 'phenotype_id',
2 => 'environment_id',
3 => 'type_id',
4 => 'pub_id',
),
),
'indexes' => array(
'phenstatement_idx1' => array(
0 => 'genotype_id',
),
'phenstatement_idx2' => array(
0 => 'phenotype_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype_id' => 'genotype_id',
),
),
'environment' => array(
'table' => 'environment',
'columns' => array(
'environment_id' => 'environment_id',
),
),
'phenotype' => array(
'table' => 'phenotype',
'columns' => array(
'phenotype_id' => 'phenotype_id',
),
),
),
'table' => 'phenstatement',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylonode()
* Purpose: To describe the structure of 'phylonode' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylonode' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylonode() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylonode_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phylotree_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'parent_phylonode_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'left_idx' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'right_idx' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'label' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'distance' => array(
'description' => 'TODO: please describe this field!',
'type' => 'float',
'size' => 'big',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'phylonode_id',
),
'unique keys' => array(
'phylotree_id' => array(
0 => 'phylotree_id',
1 => 'left_idx',
),
'phylonode_phylotree_id_key1' => array(
0 => 'phylotree_id',
1 => 'right_idx',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'phylonode' => array(
'table' => 'phylonode',
'columns' => array(
'parent_phylonode_id' => 'phylonode_id',
),
),
'phylotree' => array(
'table' => 'phylotree',
'columns' => array(
'phylotree_id' => 'phylotree_id',
),
),
),
'table' => 'phylonode',
'referring_tables' => array(
0 => 'phylonode',
1 => 'phylonode_dbxref',
2 => 'phylonode_organism',
3 => 'phylonode_pub',
4 => 'phylonode_relationship',
6 => 'phylonodeprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylonode_dbxref()
* Purpose: To describe the structure of 'phylonode_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylonode_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylonode_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylonode_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phylonode_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phylonode_dbxref_id',
),
'unique keys' => array(
'phylonode_id' => array(
0 => 'phylonode_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'phylonode_dbxref_idx1' => array(
0 => 'phylonode_id',
),
'phylonode_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'phylonode' => array(
'table' => 'phylonode',
'columns' => array(
'phylonode_id' => 'phylonode_id',
),
),
),
'table' => 'phylonode_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylonode_organism()
* Purpose: To describe the structure of 'phylonode_organism' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylonode_organism' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylonode_organism() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylonode_organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phylonode_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phylonode_organism_id',
),
'unique keys' => array(
'phylonode_id' => array(
0 => 'phylonode_id',
),
),
'indexes' => array(
'phylonode_organism_idx1' => array(
0 => 'phylonode_id',
),
'phylonode_organism_idx2' => array(
0 => 'organism_id',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
'phylonode' => array(
'table' => 'phylonode',
'columns' => array(
'phylonode_id' => 'phylonode_id',
),
),
),
'table' => 'phylonode_organism',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylonode_pub()
* Purpose: To describe the structure of 'phylonode_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylonode_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylonode_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylonode_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phylonode_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phylonode_pub_id',
),
'unique keys' => array(
'phylonode_id' => array(
0 => 'phylonode_id',
1 => 'pub_id',
),
),
'indexes' => array(
'phylonode_pub_idx1' => array(
0 => 'phylonode_id',
),
'phylonode_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'phylonode' => array(
'table' => 'phylonode',
'columns' => array(
'phylonode_id' => 'phylonode_id',
),
),
),
'table' => 'phylonode_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylonode_relationship()
* Purpose: To describe the structure of 'phylonode_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylonode_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylonode_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylonode_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'phylotree_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phylonode_relationship_id',
),
'unique keys' => array(
'subject_id' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
),
),
'indexes' => array(
'phylonode_relationship_idx1' => array(
0 => 'subject_id',
),
'phylonode_relationship_idx2' => array(
0 => 'object_id',
),
'phylonode_relationship_idx3' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'phylonode' => array(
'table' => 'phylonode',
'columns' => array(
'subject_id' => 'phylonode_id',
'object_id' => 'phylonode_id',
),
),
'phylotree' => array(
'table' => 'phylotree',
'columns' => array(
'phylotree_id' => 'phylotree_id',
),
),
),
'table' => 'phylonode_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylonodeprop()
* Purpose: To describe the structure of 'phylonodeprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylonodeprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylonodeprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylonodeprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phylonode_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
'default' => '',
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'phylonodeprop_id',
),
'unique keys' => array(
'phylonode_id' => array(
0 => 'phylonode_id',
1 => 'type_id',
2 => 'value',
3 => 'rank',
),
),
'indexes' => array(
'phylonodeprop_idx1' => array(
0 => 'phylonode_id',
),
'phylonodeprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'phylonode' => array(
'table' => 'phylonode',
'columns' => array(
'phylonode_id' => 'phylonode_id',
),
),
),
'table' => 'phylonodeprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylotree()
* Purpose: To describe the structure of 'phylotree' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylotree' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylotree() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylotree_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'analysis_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'comment' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'phylotree_id',
),
'indexes' => array(
'phylotree_idx1' => array(
0 => 'phylotree_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'analysis' => array(
'table' => 'analysis',
'columns' => array(
'analysis_id' => 'analysis_id',
),
),
),
'table' => 'phylotree',
'referring_tables' => array(
0 => 'phylonode',
1 => 'phylonode_relationship',
2 => 'phylotree_pub',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_phylotree_pub()
* Purpose: To describe the structure of 'phylotree_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'phylotree_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_phylotree_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'phylotree_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'phylotree_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'phylotree_pub_id',
),
'unique keys' => array(
'phylotree_id' => array(
0 => 'phylotree_id',
1 => 'pub_id',
),
),
'indexes' => array(
'phylotree_pub_idx1' => array(
0 => 'phylotree_id',
),
'phylotree_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'phylotree' => array(
'table' => 'phylotree',
'columns' => array(
'phylotree_id' => 'phylotree_id',
),
),
),
'table' => 'phylotree_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_project()
* Purpose: To describe the structure of 'project' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'project' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_project() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'project_id',
),
'unique keys' => array(
'project_c1' => array(
0 => 'name',
),
),
'foreign keys' => array(
),
'table' => 'project',
'referring_tables' => array(
0 => 'assay_project',
1 => 'nd_experiment_project',
2 => 'project_contact',
10 => 'project_pub',
18 => 'project_relationship',
34 => 'projectprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_project_contact()
* Purpose: To describe the structure of 'project_contact' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'project_contact' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_project_contact() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'project_contact_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'contact_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'project_contact_id',
),
'unique keys' => array(
'project_contact_c1' => array(
0 => 'project_id',
1 => 'contact_id',
),
),
'indexes' => array(
'project_contact_idx1' => array(
0 => 'project_id',
),
'project_contact_idx2' => array(
0 => 'contact_id',
),
),
'foreign keys' => array(
'contact' => array(
'table' => 'contact',
'columns' => array(
'contact_id' => 'contact_id',
),
),
'project' => array(
'table' => 'project',
'columns' => array(
'project_id' => 'project_id',
),
),
),
'table' => 'project_contact',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_project_pub()
* Purpose: To describe the structure of 'project_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'project_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_project_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'project_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'project_pub_id',
),
'unique keys' => array(
'project_pub_c1' => array(
0 => 'project_id',
1 => 'pub_id',
),
),
'indexes' => array(
'project_pub_idx1' => array(
0 => 'project_id',
),
'project_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'project' => array(
'table' => 'project',
'columns' => array(
'project_id' => 'project_id',
),
),
),
'table' => 'project_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_project_relationship()
* Purpose: To describe the structure of 'project_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'project_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_project_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'project_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'project_relationship_id',
),
'unique keys' => array(
'project_relationship_c1' => array(
0 => 'subject_project_id',
1 => 'object_project_id',
2 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'project' => array(
'table' => 'project',
'columns' => array(
'subject_project_id' => 'project_id',
'object_project_id' => 'project_id',
),
),
),
'table' => 'project_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_projectprop()
* Purpose: To describe the structure of 'projectprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'projectprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_projectprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'projectprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'project_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'projectprop_id',
),
'unique keys' => array(
'projectprop_c1' => array(
0 => 'project_id',
1 => 'type_id',
2 => 'rank',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'project' => array(
'table' => 'project',
'columns' => array(
'project_id' => 'project_id',
),
),
),
'table' => 'projectprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_protocol()
* Purpose: To describe the structure of 'protocol' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'protocol' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_protocol() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'uri' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'protocoldescription' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'hardwaredescription' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'softwaredescription' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'protocol_id',
),
'unique keys' => array(
'protocol_c1' => array(
0 => 'name',
),
),
'indexes' => array(
'protocol_idx1' => array(
0 => 'type_id',
),
'protocol_idx2' => array(
0 => 'pub_id',
),
'protocol_idx3' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'protocol',
'referring_tables' => array(
0 => 'acquisition',
1 => 'arraydesign',
2 => 'assay',
3 => 'protocolparam',
4 => 'quantification',
5 => 'treatment',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_protocolparam()
* Purpose: To describe the structure of 'protocolparam' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'protocolparam' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_protocolparam() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'protocolparam_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'datatype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'unittype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'protocolparam_id',
),
'indexes' => array(
'protocolparam_idx1' => array(
0 => 'protocol_id',
),
'protocolparam_idx2' => array(
0 => 'datatype_id',
),
'protocolparam_idx3' => array(
0 => 'unittype_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'datatype_id' => 'cvterm_id',
'unittype_id' => 'cvterm_id',
),
),
'protocol' => array(
'table' => 'protocol',
'columns' => array(
'protocol_id' => 'protocol_id',
),
),
),
'table' => 'protocolparam',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_pub()
* Purpose: To describe the structure of 'pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'title' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'volumetitle' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'volume' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'series_name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'issue' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'pyear' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'pages' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'miniref' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_obsolete' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => FALSE,
'default' => 'als',
),
'publisher' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'pubplace' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'pub_id',
),
'unique keys' => array(
'pub_c1' => array(
0 => 'uniquename',
),
),
'indexes' => array(
'pub_idx1' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'pub',
'referring_tables' => array(
0 => 'cell_line_cvterm',
1 => 'cell_line_feature',
2 => 'cell_line_library',
3 => 'cell_line_pub',
4 => 'cell_line_synonym',
5 => 'cell_lineprop_pub',
6 => 'expression_pub',
7 => 'feature_cvterm',
8 => 'feature_cvterm_pub',
9 => 'feature_expression',
10 => 'feature_pub',
11 => 'feature_relationship_pub',
12 => 'feature_relationshipprop_pub',
13 => 'feature_synonym',
14 => 'featureloc_pub',
15 => 'featuremap_pub',
16 => 'featureprop_pub',
17 => 'library_cvterm',
18 => 'library_pub',
19 => 'library_synonym',
20 => 'libraryprop_pub',
21 => 'nd_experiment_pub',
22 => 'phendesc',
23 => 'phenotype_comparison',
24 => 'phenotype_comparison_cvterm',
25 => 'phenstatement',
26 => 'phylonode_pub',
27 => 'phylotree_pub',
28 => 'project_pub',
36 => 'protocol',
37 => 'pub_dbxref',
38 => 'pub_relationship',
40 => 'pubauthor',
41 => 'pubprop',
42 => 'stock_cvterm',
43 => 'stock_pub',
44 => 'stock_relationship_cvterm',
52 => 'stock_relationship_pub',
53 => 'stockprop_pub',
54 => 'study',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_pub_dbxref()
* Purpose: To describe the structure of 'pub_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'pub_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_pub_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'pub_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'ru',
),
),
'primary key' => array(
0 => 'pub_dbxref_id',
),
'unique keys' => array(
'pub_dbxref_c1' => array(
0 => 'pub_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'pub_dbxref_idx1' => array(
0 => 'pub_id',
),
'pub_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'pub_dbxref',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_pub_relationship()
* Purpose: To describe the structure of 'pub_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'pub_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_pub_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'pub_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'pub_relationship_id',
),
'unique keys' => array(
'pub_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
),
),
'indexes' => array(
'pub_relationship_idx1' => array(
0 => 'subject_id',
),
'pub_relationship_idx2' => array(
0 => 'object_id',
),
'pub_relationship_idx3' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'subject_id' => 'pub_id',
'object_id' => 'pub_id',
),
),
),
'table' => 'pub_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_pubauthor()
* Purpose: To describe the structure of 'pubauthor' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'pubauthor' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_pubauthor() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'pubauthor_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'editor' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => FALSE,
'default' => 'als',
),
'surname' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '100',
'not null' => TRUE,
),
'givennames' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '100',
'not null' => FALSE,
),
'suffix' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '100',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'pubauthor_id',
),
'unique keys' => array(
'pubauthor_c1' => array(
0 => 'pub_id',
1 => 'rank',
),
),
'indexes' => array(
'pubauthor_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'pubauthor',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_pubprop()
* Purpose: To describe the structure of 'pubprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'pubprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_pubprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'pubprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'pubprop_id',
),
'unique keys' => array(
'pubprop_c1' => array(
0 => 'pub_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'pubprop_idx1' => array(
0 => 'pub_id',
),
'pubprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'table' => 'pubprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_quantification()
* Purpose: To describe the structure of 'quantification' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'quantification' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_quantification() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'quantification_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'acquisition_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'operator_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'analysis_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'quantificationdate' => array(
'description' => 'TODO: please describe this field!',
'type' => 'datetime',
'not null' => FALSE,
'default' => 'ow(',
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'uri' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'quantification_id',
),
'unique keys' => array(
'quantification_c1' => array(
0 => 'name',
1 => 'analysis_id',
),
),
'indexes' => array(
'quantification_idx1' => array(
0 => 'acquisition_id',
),
'quantification_idx2' => array(
0 => 'operator_id',
),
'quantification_idx3' => array(
0 => 'protocol_id',
),
'quantification_idx4' => array(
0 => 'analysis_id',
),
),
'foreign keys' => array(
'analysis' => array(
'table' => 'analysis',
'columns' => array(
'analysis_id' => 'analysis_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'operator_id' => 'contact_id',
),
),
'protocol' => array(
'table' => 'protocol',
'columns' => array(
'protocol_id' => 'protocol_id',
),
),
'acquisition' => array(
'table' => 'acquisition',
'columns' => array(
'acquisition_id' => 'acquisition_id',
),
),
),
'table' => 'quantification',
'referring_tables' => array(
0 => 'elementresult',
1 => 'quantification_relationship',
3 => 'quantificationprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_quantification_relationship()
* Purpose: To describe the structure of 'quantification_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'quantification_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_quantification_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'quantification_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'quantification_relationship_id',
),
'unique keys' => array(
'quantification_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
),
),
'indexes' => array(
'quantification_relationship_idx1' => array(
0 => 'subject_id',
),
'quantification_relationship_idx2' => array(
0 => 'type_id',
),
'quantification_relationship_idx3' => array(
0 => 'object_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'quantification' => array(
'table' => 'quantification',
'columns' => array(
'subject_id' => 'quantification_id',
'object_id' => 'quantification_id',
),
),
),
'table' => 'quantification_relationship',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_quantificationprop()
* Purpose: To describe the structure of 'quantificationprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'quantificationprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_quantificationprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'quantificationprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'quantification_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'quantificationprop_id',
),
'unique keys' => array(
'quantificationprop_c1' => array(
0 => 'quantification_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'quantificationprop_idx1' => array(
0 => 'quantification_id',
),
'quantificationprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'quantification' => array(
'table' => 'quantification',
'columns' => array(
'quantification_id' => 'quantification_id',
),
),
),
'table' => 'quantificationprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock()
* Purpose: To describe the structure of 'stock' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock() {
$description = array(
'description' => 'Any stock can be globally identified by the combination of organism, uniquename and stock type. A stock is the physical entities, either living or preserved, held by collections. Stocks belong to a collection; they have IDs, type, organism, description and may have a genotype.',
'fields' => array(
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'organism_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_obsolete' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
),
'primary key' => array(
0 => 'stock_id',
),
'unique keys' => array(
'stock_c1' => array(
0 => 'organism_id',
1 => 'uniquename',
2 => 'type_id',
),
),
'indexes' => array(
'stock_idx1' => array(
0 => 'dbxref_id',
),
'stock_idx2' => array(
0 => 'organism_id',
),
'stock_idx3' => array(
0 => 'type_id',
),
'stock_idx4' => array(
0 => 'uniquename',
),
'stock_name_ind1' => array(
0 => 'name',
),
),
'foreign keys' => array(
'organism' => array(
'table' => 'organism',
'columns' => array(
'organism_id' => 'organism_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'referring_tables' => array(
0 => 'nd_experiment_stock',
1 => 'stock_cvterm',
2 => 'stock_dbxref',
3 => 'stock_genotype',
4 => 'stock_pub',
5 => 'stock_relationship',
7 => 'stockcollection_stock',
8 => 'stockprop',
),
'table' => 'stock',
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_cvterm()
* Purpose: To describe the structure of 'stock_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_not' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'als',
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'stock_cvterm_id',
),
'unique keys' => array(
'stock_cvterm_c1' => array(
0 => 'stock_id',
1 => 'cvterm_id',
2 => 'pub_id',
3 => 'rank',
),
),
'indexes' => array(
'stock_cvterm_idx1' => array(
0 => 'stock_id',
),
'stock_cvterm_idx2' => array(
0 => 'cvterm_id',
),
'stock_cvterm_idx3' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
),
'table' => 'stock_cvterm',
'referring_tables' => array(
0 => 'stock_cvtermprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_cvtermprop()
* Purpose: To describe the structure of 'stock_cvtermprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_cvtermprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_cvtermprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_cvtermprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'stock_cvtermprop_id',
),
'unique keys' => array(
'stock_cvtermprop_c1' => array(
0 => 'stock_cvterm_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'stock_cvtermprop_idx1' => array(
0 => 'stock_cvterm_id',
),
'stock_cvtermprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'stock_cvterm' => array(
'table' => 'stock_cvterm',
'columns' => array(
'stock_cvterm_id' => 'stock_cvterm_id',
),
),
),
'table' => 'stock_cvtermprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_dbxref()
* Purpose: To describe the structure of 'stock_dbxref' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_dbxref' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_dbxref() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'is_current' => array(
'description' => 'TODO: please describe this field!',
'type' => 'boolean',
'not null' => TRUE,
'default' => 'ru',
),
),
'primary key' => array(
0 => 'stock_dbxref_id',
),
'unique keys' => array(
'stock_dbxref_c1' => array(
0 => 'stock_id',
1 => 'dbxref_id',
),
),
'indexes' => array(
'stock_dbxref_idx1' => array(
0 => 'stock_id',
),
'stock_dbxref_idx2' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
),
'table' => 'stock_dbxref',
'referring_tables' => array(
0 => 'stock_dbxrefprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_dbxrefprop()
* Purpose: To describe the structure of 'stock_dbxrefprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_dbxrefprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_dbxrefprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_dbxrefprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'stock_dbxrefprop_id',
),
'unique keys' => array(
'stock_dbxrefprop_c1' => array(
0 => 'stock_dbxref_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'stock_dbxrefprop_idx1' => array(
0 => 'stock_dbxref_id',
),
'stock_dbxrefprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'stock_dbxref' => array(
'table' => 'stock_dbxref',
'columns' => array(
'stock_dbxref_id' => 'stock_dbxref_id',
),
),
),
'table' => 'stock_dbxrefprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_genotype()
* Purpose: To describe the structure of 'stock_genotype' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_genotype' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_genotype() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'genotype_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'stock_genotype_id',
),
'unique keys' => array(
'stock_genotype_c1' => array(
0 => 'stock_id',
1 => 'genotype_id',
),
),
'indexes' => array(
'stock_genotype_idx1' => array(
0 => 'stock_id',
),
'stock_genotype_idx2' => array(
0 => 'genotype_id',
),
),
'foreign keys' => array(
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype_id' => 'genotype_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
),
'table' => 'stock_genotype',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_pub()
* Purpose: To describe the structure of 'stock_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'stock_pub_id',
),
'unique keys' => array(
'stock_pub_c1' => array(
0 => 'stock_id',
1 => 'pub_id',
),
),
'indexes' => array(
'stock_pub_idx1' => array(
0 => 'stock_id',
),
'stock_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
),
'table' => 'stock_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_relationship()
* Purpose: To describe the structure of 'stock_relationship' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_relationship' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_relationship() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'subject_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'object_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'stock_relationship_id',
),
'unique keys' => array(
'stock_relationship_c1' => array(
0 => 'subject_id',
1 => 'object_id',
2 => 'type_id',
3 => 'rank',
),
),
'indexes' => array(
'stock_relationship_idx1' => array(
0 => 'subject_id',
),
'stock_relationship_idx2' => array(
0 => 'object_id',
),
'stock_relationship_idx3' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'subject_id' => 'stock_id',
'object_id' => 'stock_id',
),
),
),
'table' => 'stock_relationship',
'referring_tables' => array(
0 => 'stock_relationship_cvterm',
8 => 'stock_relationship_pub',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_relationship_cvterm()
* Purpose: To describe the structure of 'stock_relationship_cvterm' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_relationship_cvterm' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_relationship_cvterm() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_relationship_cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'cvterm_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'stock_relationship_cvterm_id',
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'cvterm_id' => 'cvterm_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'stock_relationship' => array(
'table' => 'stock_relationship',
'columns' => array(
'stock_relationship_id' => 'stock_relationship_id',
),
),
),
'table' => 'stock_relationship_cvterm',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stock_relationship_pub()
* Purpose: To describe the structure of 'stock_relationship_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stock_relationship_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stock_relationship_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stock_relationship_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_relationship_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'stock_relationship_pub_id',
),
'unique keys' => array(
'stock_relationship_pub_c1' => array(
0 => 'stock_relationship_id',
1 => 'pub_id',
),
),
'indexes' => array(
'stock_relationship_pub_idx1' => array(
0 => 'stock_relationship_id',
),
'stock_relationship_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'stock_relationship' => array(
'table' => 'stock_relationship',
'columns' => array(
'stock_relationship_id' => 'stock_relationship_id',
),
),
),
'table' => 'stock_relationship_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stockcollection()
* Purpose: To describe the structure of 'stockcollection' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stockcollection' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stockcollection() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stockcollection_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'contact_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => FALSE,
),
'uniquename' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'stockcollection_id',
),
'unique keys' => array(
'stockcollection_c1' => array(
0 => 'uniquename',
1 => 'type_id',
),
),
'indexes' => array(
'stockcollection_idx1' => array(
0 => 'contact_id',
),
'stockcollection_idx2' => array(
0 => 'type_id',
),
'stockcollection_idx3' => array(
0 => 'uniquename',
),
'stockcollection_name_ind1' => array(
0 => 'name',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'contact_id' => 'contact_id',
),
),
),
'table' => 'stockcollection',
'referring_tables' => array(
0 => 'stockcollection_stock',
1 => 'stockcollectionprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stockcollection_stock()
* Purpose: To describe the structure of 'stockcollection_stock' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stockcollection_stock' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stockcollection_stock() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stockcollection_stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stockcollection_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'stockcollection_stock_id',
),
'unique keys' => array(
'stockcollection_stock_c1' => array(
0 => 'stockcollection_id',
1 => 'stock_id',
),
),
'indexes' => array(
'stockcollection_stock_idx1' => array(
0 => 'stockcollection_id',
),
'stockcollection_stock_idx2' => array(
0 => 'stock_id',
),
),
'foreign keys' => array(
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
'stockcollection' => array(
'table' => 'stockcollection',
'columns' => array(
'stockcollection_id' => 'stockcollection_id',
),
),
),
'table' => 'stockcollection_stock',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stockcollectionprop()
* Purpose: To describe the structure of 'stockcollectionprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stockcollectionprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stockcollectionprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stockcollectionprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stockcollection_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'stockcollectionprop_id',
),
'unique keys' => array(
'stockcollectionprop_c1' => array(
0 => 'stockcollection_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'stockcollectionprop_idx1' => array(
0 => 'stockcollection_id',
),
'stockcollectionprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'stockcollection' => array(
'table' => 'stockcollection',
'columns' => array(
'stockcollection_id' => 'stockcollection_id',
),
),
),
'table' => 'stockcollectionprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stockprop()
* Purpose: To describe the structure of 'stockprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stockprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stockprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stockprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stock_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'stockprop_id',
),
'unique keys' => array(
'stockprop_c1' => array(
0 => 'stock_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'stockprop_idx1' => array(
0 => 'stock_id',
),
'stockprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
),
'table' => 'stockprop',
'referring_tables' => array(
0 => 'stockprop_pub',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_stockprop_pub()
* Purpose: To describe the structure of 'stockprop_pub' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'stockprop_pub' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_stockprop_pub() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'stockprop_pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'stockprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'stockprop_pub_id',
),
'unique keys' => array(
'stockprop_pub_c1' => array(
0 => 'stockprop_id',
1 => 'pub_id',
),
),
'indexes' => array(
'stockprop_pub_idx1' => array(
0 => 'stockprop_id',
),
'stockprop_pub_idx2' => array(
0 => 'pub_id',
),
),
'foreign keys' => array(
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'stockprop' => array(
'table' => 'stockprop',
'columns' => array(
'stockprop_id' => 'stockprop_id',
),
),
),
'table' => 'stockprop_pub',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_study()
* Purpose: To describe the structure of 'study' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'study' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_study() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'study_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'contact_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'pub_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'dbxref_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'study_id',
),
'unique keys' => array(
'study_c1' => array(
0 => 'name',
),
),
'indexes' => array(
'study_idx1' => array(
0 => 'contact_id',
),
'study_idx2' => array(
0 => 'pub_id',
),
'study_idx3' => array(
0 => 'dbxref_id',
),
),
'foreign keys' => array(
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'contact_id' => 'contact_id',
),
),
),
'table' => 'study',
'referring_tables' => array(
0 => 'study_assay',
1 => 'studydesign',
2 => 'studyprop',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_study_assay()
* Purpose: To describe the structure of 'study_assay' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'study_assay' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_study_assay() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'study_assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'study_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'study_assay_id',
),
'unique keys' => array(
'study_assay_c1' => array(
0 => 'study_id',
1 => 'assay_id',
),
),
'indexes' => array(
'study_assay_idx1' => array(
0 => 'study_id',
),
'study_assay_idx2' => array(
0 => 'assay_id',
),
),
'foreign keys' => array(
'assay' => array(
'table' => 'assay',
'columns' => array(
'assay_id' => 'assay_id',
),
),
'study' => array(
'table' => 'study',
'columns' => array(
'study_id' => 'study_id',
),
),
),
'table' => 'study_assay',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_studydesign()
* Purpose: To describe the structure of 'studydesign' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'studydesign' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_studydesign() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'studydesign_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'study_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'studydesign_id',
),
'indexes' => array(
'studydesign_idx1' => array(
0 => 'study_id',
),
),
'foreign keys' => array(
'study' => array(
'table' => 'study',
'columns' => array(
'study_id' => 'study_id',
),
),
),
'table' => 'studydesign',
'referring_tables' => array(
0 => 'studydesignprop',
1 => 'studyfactor',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_studydesignprop()
* Purpose: To describe the structure of 'studydesignprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'studydesignprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_studydesignprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'studydesignprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'studydesign_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'studydesignprop_id',
),
'unique keys' => array(
'studydesignprop_c1' => array(
0 => 'studydesign_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'studydesignprop_idx1' => array(
0 => 'studydesign_id',
),
'studydesignprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'studydesign' => array(
'table' => 'studydesign',
'columns' => array(
'studydesign_id' => 'studydesign_id',
),
),
),
'table' => 'studydesignprop',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_studyfactor()
* Purpose: To describe the structure of 'studyfactor' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'studyfactor' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_studyfactor() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'studyfactor_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'studydesign_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => TRUE,
),
'description' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'studyfactor_id',
),
'indexes' => array(
'studyfactor_idx1' => array(
0 => 'studydesign_id',
),
'studyfactor_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'studydesign' => array(
'table' => 'studydesign',
'columns' => array(
'studydesign_id' => 'studydesign_id',
),
),
),
'table' => 'studyfactor',
'referring_tables' => array(
0 => 'studyfactorvalue',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_studyfactorvalue()
* Purpose: To describe the structure of 'studyfactorvalue' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'studyfactorvalue' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_studyfactorvalue() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'studyfactorvalue_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'studyfactor_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'assay_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'factorvalue' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'studyfactorvalue_id',
),
'indexes' => array(
'studyfactorvalue_idx1' => array(
0 => 'studyfactor_id',
),
'studyfactorvalue_idx2' => array(
0 => 'assay_id',
),
),
'foreign keys' => array(
'assay' => array(
'table' => 'assay',
'columns' => array(
'assay_id' => 'assay_id',
),
),
'studyfactor' => array(
'table' => 'studyfactor',
'columns' => array(
'studyfactor_id' => 'studyfactor_id',
),
),
),
'table' => 'studyfactorvalue',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_studyprop()
* Purpose: To describe the structure of 'studyprop' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'studyprop' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_studyprop() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'studyprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'study_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'value' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
),
'primary key' => array(
0 => 'studyprop_id',
),
'unique keys' => array(
'study_id' => array(
0 => 'study_id',
1 => 'type_id',
2 => 'rank',
),
),
'indexes' => array(
'studyprop_idx1' => array(
0 => 'study_id',
),
'studyprop_idx2' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'study' => array(
'table' => 'study',
'columns' => array(
'study_id' => 'study_id',
),
),
),
'table' => 'studyprop',
'referring_tables' => array(
0 => 'studyprop_feature',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_studyprop_feature()
* Purpose: To describe the structure of 'studyprop_feature' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'studyprop_feature' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_studyprop_feature() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'studyprop_feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'studyprop_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'feature_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'studyprop_feature_id',
),
'unique keys' => array(
'studyprop_id' => array(
0 => 'studyprop_id',
1 => 'feature_id',
),
),
'indexes' => array(
'studyprop_feature_idx1' => array(
0 => 'studyprop_id',
),
'studyprop_feature_idx2' => array(
0 => 'feature_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'studyprop' => array(
'table' => 'studyprop',
'columns' => array(
'studyprop_id' => 'studyprop_id',
),
),
),
'table' => 'studyprop_feature',
'referring_tables' => NULL,
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_synonym()
* Purpose: To describe the structure of 'synonym' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'synonym' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_synonym() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'synonym_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'synonym_sgml' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '255',
'not null' => TRUE,
),
),
'primary key' => array(
0 => 'synonym_id',
),
'unique keys' => array(
'synonym_c1' => array(
0 => 'name',
1 => 'type_id',
),
),
'indexes' => array(
'synonym_idx1' => array(
0 => 'type_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'table' => 'synonym',
'referring_tables' => array(
0 => 'cell_line_synonym',
1 => 'feature_synonym',
2 => 'library_synonym',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_tableinfo()
* Purpose: To describe the structure of 'tableinfo' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'tableinfo' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_tableinfo() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'tableinfo_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '30',
'not null' => TRUE,
),
'primary_key_column' => array(
'description' => 'TODO: please describe this field!',
'type' => 'varchar',
'length' => '30',
'not null' => FALSE,
),
'is_view' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
'view_on_table_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'superclass_table_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'is_updateable' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 1,
),
'modification_date' => array(
'description' => 'TODO: please describe this field!',
'type' => 'date',
'not null' => TRUE,
'default' => 'ow(',
),
),
'primary key' => array(
0 => 'tableinfo_id',
),
'unique keys' => array(
'tableinfo_c1' => array(
0 => 'name',
),
),
'foreign keys' => array(
),
'table' => 'tableinfo',
'referring_tables' => array(
0 => 'control',
1 => 'magedocumentation',
),
);
return $description;
}
/**
* Implements hook_chado_schema_v1_2_treatment()
* Purpose: To describe the structure of 'treatment' to tripal
* @see tripal_core_chado_insert()
* @see tripal_core_chado_update()
* @see tripal_core_chado_select()
*
* @return
* An array describing the 'treatment' table
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_schema_v1_2_treatment() {
$description = array(
'description' => 'TODO: please describe this table!',
'fields' => array(
'treatment_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'serial',
'not null' => TRUE,
),
'rank' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
'default' => 0,
),
'biomaterial_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'type_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => TRUE,
),
'protocol_id' => array(
'description' => 'TODO: please describe this field!',
'type' => 'int',
'not null' => FALSE,
),
'name' => array(
'description' => 'TODO: please describe this field!',
'type' => 'text',
'not null' => FALSE,
),
),
'primary key' => array(
0 => 'treatment_id',
),
'indexes' => array(
'treatment_idx1' => array(
0 => 'biomaterial_id',
),
'treatment_idx2' => array(
0 => 'type_id',
),
'treatment_idx3' => array(
0 => 'protocol_id',
),
),
'foreign keys' => array(
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
'protocol' => array(
'table' => 'protocol',
'columns' => array(
'protocol_id' => 'protocol_id',
),
),
'biomaterial' => array(
'table' => 'biomaterial',
'columns' => array(
'biomaterial_id' => 'biomaterial_id',
),
),
),
'table' => 'treatment',
'referring_tables' => array(
0 => 'biomaterial_treatment',
),
);
return $description;
}
/**
* Lists the table names in the v1.2 chado schema
*
* @return
* An array containing all of the table names
*
* @ingroup tripal_chado_v1.2_schema_api
*
*/
function tripal_core_chado_get_v1_2_tables() {
$tables = array(
'acquisition',
'acquisition_relationship',
'acquisitionprop',
'analysis',
'analysisfeature',
'analysisfeatureprop',
'analysisprop',
'arraydesign',
'arraydesignprop',
'assay',
'assay_biomaterial',
'assay_project',
'assayprop',
'biomaterial',
'biomaterial_dbxref',
'biomaterial_relationship',
'biomaterial_treatment',
'biomaterialprop',
'cell_line',
'cell_line_cvterm',
'cell_line_cvtermprop',
'cell_line_dbxref',
'cell_line_feature',
'cell_line_library',
'cell_line_pub',
'cell_line_relationship',
'cell_line_synonym',
'cell_lineprop',
'cell_lineprop_pub',
'chadoprop',
'channel',
'contact',
'contact_relationship',
'control',
'cv',
'cvprop',
'cvterm',
'cvterm_dbxref',
'cvterm_relationship',
'cvtermpath',
'cvtermprop',
'cvtermsynonym',
'db',
'dbxref',
'dbxrefprop',
'eimage',
'element',
'element_relationship',
'elementresult',
'elementresult_relationship',
'environment',
'environment_cvterm',
'expression',
'expression_cvterm',
'expression_cvtermprop',
'expression_image',
'expression_pub',
'expressionprop',
'feature',
'feature_cvterm',
'feature_cvterm_dbxref',
'feature_cvterm_pub',
'feature_cvtermprop',
'feature_dbxref',
'feature_expression',
'feature_expressionprop',
'feature_genotype',
'feature_phenotype',
'feature_pub',
'feature_pubprop',
'feature_relationship',
'feature_relationship_pub',
'feature_relationshipprop',
'feature_relationshipprop_pub',
'feature_synonym',
'featureloc',
'featureloc_pub',
'featuremap',
'featuremap_pub',
'featurepos',
'featureprop',
'featureprop_pub',
'featurerange',
'genotype',
'genotypeprop',
'library',
'library_cvterm',
'library_dbxref',
'library_feature',
'library_pub',
'library_synonym',
'libraryprop',
'libraryprop_pub',
'magedocumentation',
'mageml',
'nd_experiment',
'nd_experiment_contact',
'nd_experiment_dbxref',
'nd_experiment_genotype',
'nd_experiment_phenotype',
'nd_experiment_project',
'nd_experiment_protocol',
'nd_experiment_pub',
'nd_experiment_stock',
'nd_experiment_stock_dbxref',
'nd_experiment_stockprop',
'nd_experimentprop',
'nd_geolocation',
'nd_geolocationprop',
'nd_protocol',
'nd_protocol_reagent',
'nd_protocolprop',
'nd_reagent',
'nd_reagent_relationship',
'nd_reagentprop',
'organism',
'organism_dbxref',
'organismprop',
'phendesc',
'phenotype',
'phenotype_comparison',
'phenotype_comparison_cvterm',
'phenotype_cvterm',
'phenstatement',
'phylonode',
'phylonode_dbxref',
'phylonode_organism',
'phylonode_pub',
'phylonode_relationship',
'phylonodeprop',
'phylotree',
'phylotree_pub',
'project',
'project_contact',
'project_pub',
'project_relationship',
'projectprop',
'protocol',
'protocolparam',
'pub',
'pub_dbxref',
'pub_relationship',
'pubauthor',
'pubprop',
'quantification',
'quantification_relationship',
'quantificationprop',
'stock',
'stock_cvterm',
'stock_cvtermprop',
'stock_dbxref',
'stock_dbxrefprop',
'stock_genotype',
'stock_pub',
'stock_relationship',
'stock_relationship_cvterm',
'stock_relationship_pub',
'stockcollection',
'stockcollection_stock',
'stockcollectionprop',
'stockprop',
'stockprop_pub',
'study',
'study_assay',
'studydesign',
'studydesignprop',
'studyfactor',
'studyfactorvalue',
'studyprop',
'studyprop_feature',
'synonym',
'tableinfo',
'treatment'
);
return $tables;
}