'local', // The name of the term. 'term_name' => 'contact', // The unique ID (i.e. accession) of the term. 'term_accession' => 'contact', // Set to TRUE if the site admin is allowed to change the term // type. This will create form elements when editing the field instance // to allow the site admin to change the term settings above. 'term_fixed' => FALSE, ]; // The default widget for this field. public static $default_widget = 'local__contact_widget'; // The default formatter for this field. public static $default_formatter = 'local__contact_formatter'; // -------------------------------------------------------------------------- // PROTECTED CLASS MEMBERS -- DO NOT OVERRIDE // -------------------------------------------------------------------------- // An array containing details about the field. The format of this array // is the same as that returned by field_info_fields() protected $field; // An array containing details about an instance of the field. A field does // not have to have an instance. But if dealing with an instance (such as // when using the widgetForm, formatterSettingsForm, etc.) it should be set. protected $instance; /** * @see TripalField::elements() */ public function elementInfo() { $field_term = $this->getFieldTermID(); $type_term = chado_get_semweb_term('contact', 'type_id'); $name_term = chado_get_semweb_term('contact', 'name'); $description_term = chado_get_semweb_term('contact', 'description'); return [ $field_term => [ 'operations' => ['eq', 'contains', 'starts'], 'sortable' => TRUE, 'searchable' => TRUE, 'type' => 'xs:complexType', 'readonly' => TRUE, 'elements' => [ $type_term => [ 'searchable' => TRUE, 'label' => 'Contact Type', 'help' => 'The type of contact', 'operations' => ['eq', 'ne', 'contains', 'starts'], 'sortable' => TRUE, 'type' => 'xs:string', 'readonly' => FALSE, 'required' => TRUE, ], $name_term => [ 'searchable' => TRUE, 'label' => 'Contact Name', 'help' => 'The name of the contact.', 'operations' => ['eq', 'ne', 'contains', 'starts'], 'sortable' => TRUE, 'type' => 'xs:string', 'readonly' => FALSE, 'required' => TRUE, ], $description_term => [ 'searchable' => TRUE, 'label' => 'Contact Description', 'help' => 'A descriptoin of the contact.', 'operations' => ['contains'], 'sortable' => TRUE, 'type' => 'xs:string', 'readonly' => FALSE, 'required' => FALSE, ], 'entity' => [ 'searchable' => FALSE, ], ], ], ]; } /** * * @see TripalField::load() */ public function load($entity) { $record = $entity->chado_record; $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->instance['settings']['chado_table']; $field_column = $this->instance['settings']['chado_column']; $base_table = $this->instance['settings']['base_table']; $type_term = chado_get_semweb_term('contact', 'type_id'); $name_term = chado_get_semweb_term('contact', 'name'); $description_term = chado_get_semweb_term('contact', 'description'); // Set some defaults for the empty record. $entity->{$field_name}['und'][0] = [ 'value' => [], ]; // Handle the biomaterial table. if (!$record) { return; } $linker_field = 'chado-' . $field_table . '__' . $field_column; $contact = $record->{$field_column}; if ($contact) { $entity->{$field_name}['und'][0] = [ 'value' => [ $type_term => $contact->type_id ? $contact->type_id->name : '', $name_term => $contact->name, $description_term => $contact->description, ], $entity->{$field_name}['und'][0][$linker_field] = $contact->contact_id, ]; if (property_exists($contact, 'entity_id')) { $entity->{$field_name}['und'][0]['value']['entity'] = 'TripalEntity:' . $contact->entity_id; } } } /** * @see ChadoField::query() */ public function query($query, $condition) { $alias = $this->field['field_name']; $operator = $condition['operator']; $field_term_id = $this->getFieldTermID(); $type_term = chado_get_semweb_term('contact', 'type_id'); $name_term = chado_get_semweb_term('contact', 'name'); $description_term = chado_get_semweb_term('contact', 'description'); if ($field_table == 'biomaterial') { if ($record) { $contact = $record->biosourceprovider_id; // Join the contact table $calias = $alias . '_provider_id'; $this->queryJoinOnce($query, 'contact', $calias, "base.biosourceprovider_id = $calias.contact_id"); // Search by the contact name if ($condition['column'] == $field_term_id or $condition['column'] == $field_term_id . ',' . $name_term) { $query->condition("$calias.name", $condition['value'], $operator); } // Search on the contact description. if ($condition['column'] == $field_term_id . ',' . $description_term) { $query->condition("$calias.description", $condition['value'], $operator); } // Search on the contact type. if ($condition['column'] == $field_term_id . ',' . $type_term) { $talias = $alias . 'provider_contact_type'; $this->queryJoinOnce($query, 'cvterm', $talias, "$calias.type_id = $talias.cvterm_id"); $query->condition("$talias.name", $condition['value'], $operator); } } } } /** * @see ChadoField::queryOrder() */ public function queryOrder($query, $order) { $alias = $this->field['field_name']; $field_term_id = $this->getFieldTermID(); $type_term = chado_get_semweb_term('contact', 'type_id'); $name_term = chado_get_semweb_term('contact', 'name'); $description_term = chado_get_semweb_term('contact', 'description'); if ($field_table == 'biomaterial') { if ($record) { $contact = $record->biosourceprovider_id; // Join the contact linker table and then join the contact table. $calias = $alias . '_provider_id'; $this->queryJoinOnce($query, 'contact', $calias, "base.biosourceprovider_id = $calias.contact_id"); // Search by the contact name if ($order['column'] == $field_term_id or $order['column'] == $field_term_id . ',' . $name_term) { $query->orderBy("$calias.name", $order['direction']); } // Search on the contact description. if ($order['column'] == $field_term_id . ',' . $description_term) { $query->orderBy("$calias.description", $order['direction']); } // Search on the contact type. if ($order['column'] == $field_term_id . ',' . $type_term) { $talias = $alias . 'provider_contact_type'; $this->queryJoinOnce($query, 'cvterm', $talias, "$calias.type_id = $talias.cvterm_id", "LEFT OUTER"); $query->orderBy("$talias.name", $order['direction']); } } } } }