'local', // The name of the term. 'term_name' => 'source_data', // The unique ID (i.e. accession) of the term. 'term_accession' => 'source_data', // Set to TRUE if the site admin is allowed to change the term // type. This will create form elements when editing the field instance // to allow the site admin to change the term settings above. 'term_fixed' => FALSE, ]; // The default widget for this field. public static $default_widget = 'local__source_data_widget'; // The default formatter for this field. public static $default_formatter = 'local__source_data_formatter'; // -------------------------------------------------------------------------- // PROTECTED CLASS MEMBERS -- DO NOT OVERRIDE // -------------------------------------------------------------------------- // An array containing details about the field. The format of this array // is the same as that returned by field_info_fields() protected $field; // An array containing details about an instance of the field. A field does // not have to have an instance. But if dealing with an instance (such as // when using the widgetForm, formatterSettingsForm, etc.) it should be set. protected $instance; /** * @see TripalField::elementInfo() */ public function elementInfo() { $field_term = $this->getFieldTermID(); $sourcename_term = chado_get_semweb_term('analysis', 'sourcename'); $sourceversion_term = chado_get_semweb_term('analysis', 'sourceversion'); $sourceuri_term = chado_get_semweb_term('analysis', 'sourceuri'); return [ $field_term => [ 'operations' => [], 'sortable' => FALSE, 'searchable' => FALSE, 'type' => 'xs:complexType', 'readonly' => TRUE, 'elements' => [ $sourcename_term => [ 'searchable' => TRUE, 'label' => 'Data Source Name', 'help' => 'The name of the data source used for the analysis.', 'sortable' => TRUE, 'type' => 'xs:string', 'readonly' => TRUE, 'required' => FALSE, ], $sourceversion_term => [ 'searchable' => TRUE, 'label' => 'Data Source Version', 'help' => 'If applicable, the version number of the source data used for the analysis.', 'sortable' => TRUE, 'type' => 'xs:string', 'readonly' => TRUE, 'required' => FALSE, ], $sourceuri_term => [ 'searchable' => FALSE, 'label' => 'Data Source URI', 'help' => 'If applicable, the universal resource indicator (e.g. URL) of the source data used for the analysis.', 'sortable' => FALSE, 'type' => 'xs:string', 'readonly' => TRUE, 'required' => FALSE, ], ], ], ]; } /** * @see ChadoField::query() */ public function query($query, $condition) { $operator = $condition['operator']; $field_term_id = $this->getFieldTermID(); $sourcename_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'sourcename'); $sourceversion_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'sourceversion'); $sourceuri_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'sourceuri'); if ($condition['column'] == $sourcename_term) { $query->condition("base.sourcename", $condition['value'], $operator); } if ($condition['column'] == $sourceversion_term) { $query->condition("base.sourceversion", $condition['value'], $operator); } } /** * @see ChadoField::queryOrder() */ public function queryOrder($query, $order) { $field_term_id = $this->getFieldTermID(); $sourcename_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'sourcename'); $sourceversion_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'sourceversion'); $sourceuri_term = $field_term_id . ',' . chado_get_semweb_term('analysis', 'sourceuri'); if ($order['column'] == $sourcename_term) { $query->orderBy("base.sourcename", $order['direction']); } if ($order['column'] == $sourceversion_term) { $query->orderBy("base.sourceversion", $order['direction']); } } /** * * @see TripalField::load() */ public function load($entity) { $analysis = $entity->chado_record; $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->instance['settings']['chado_table']; $field_column = $this->instance['settings']['chado_column']; $sourcename_term = chado_get_semweb_term('analysis', 'sourcename'); $sourceversion_term = chado_get_semweb_term('analysis', 'sourceversion'); $sourceuri_term = chado_get_semweb_term('analysis', 'sourceuri'); $entity->{$field_name}['und'][0] = [ 'value' => [ $sourcename_term => $analysis->sourcename, $sourceversion_term => $analysis->sourceversion, $sourceuri_term => $analysis->sourceuri, ], 'chado-analysis__sourcename' => $analysis->sourcename, 'chado-analysis__sourceversion' => $analysis->sourceversion, 'chado-analysis__sourceuri' => $analysis->sourceuri, ]; } }