<?php
// Purpose: This template provides the layout of the organism node (page)
//   using the same templates used for the various feature content blocks.
//
// To Customize the Featture Node Page:
//   - This Template: customize basic layout and which elements are included
//   - Using Panels: Override the node page using Panels3 and place the blocks
//       of content as you please. This method requires no programming. See
//       the Tripal User Guide for more details
//   - Block Templates: customize the content/layout of each block of stock 
//       content. These templates are found in the tripal_stock subdirectory
//
// Variables Available:
//   - $node: a standard object which contains all the fields associated with
//       nodes including nid, type, title, taxonomy. It also includes stock
//       specific fields such as stock_name, uniquename, stock_type, synonyms,
//       properties, db_references, object_relationships, subject_relationships,
//       organism, etc.
//   NOTE: For a full listing of fields available in the node object the
//       print_r $node line below or install the Drupal Devel module which 
//       provides an extra tab at the top of the node page labelled Devel
?>

<?php
 //uncomment this line to see a full listing of the fields avail. to $node
 //print '<pre>'.print_r($variables,TRUE).'</pre>';

$node = $variables['node'];
$organism = $variables['node']->organism;
?>

<?php if ($teaser) { 
  include('tripal_organism/tripal_organism_teaser.tpl.php'); 
} else { ?>

<script type="text/javascript">
if (Drupal.jsEnabled) {
   $(document).ready(function() {
      // hide all tripal info boxes at the start
      $(".tripal-info-box").hide();
 
      // iterate through all of the info boxes and add their titles
      // to the table of contents
      $(".tripal-info-box-title").each(function(){
        var parent = $(this).parent();
        var id = $(parent).attr('id');
        var title = $(this).text();
        $('#tripal_organism_toc_list').append('<li><a href="#'+id+'" class="tripal_organism_toc_item">'+title+'</a></li>');
      });

      // when a title in the table of contents is clicked, then
      // show the corresponding item in the details box
      $(".tripal_organism_toc_item").click(function(){
         $(".tripal-info-box").hide();
         href = $(this).attr('href');
         $(href).fadeIn('slow');
         // we want to make sure our table of contents and the details
         // box stay the same height
         $("#tripal_organism_toc").height($(href).parent().height());
         return false;
      }); 

      // we want the base details to show up when the page is first shown 
      // unless we're using the feature browser then we want that page to show
      if(window.location.href.match(/\?page=\d+/)){
         $("#tripal_organism-feature_browser-box").show();
      } else {
         $("#tripal_organism-base-box").show();
      }
      $("#tripal_organism_toc").height($("#tripal_organism-base-box").parent().height());

      // we want to select the first GO/KEGG report by default
		$('.form-select').each(function() {
        var default_option = this.getElementsByTagName('option')[1];
        if (default_option) {
           this.selectedIndex =default_option.index ;
           if (this.onchange.toString().match('tripal_analysis_go_org_charts')) {   
              tripal_analysis_go_org_charts(default_option.value);
           } else if (this.onchange.toString().match('tripal_analysis_kegg_org_report')) {            
              tripal_analysis_kegg_org_report(default_option.value);
           }
        }
		});
      
   });
}
</script>

<style type="text/css">
  /* these styles are specific for this template and is not included 
     in the main CSS files for the theme as it is anticipated that the
     elements on this page may not be used for other customizations */
  #tripal_organism_toc {
     float: left;
     width: 20%;
     background-color: #EEEEEE;
     -moz-border-radius: 15px;
     border-radius: 15px;
     -moz-box-shadow: 3px 3px 4px #000;
	  -webkit-box-shadow: 3px 3px 4px #000;
	  box-shadow: 3px 3px 4px #000;
     padding: 20px;
     min-height: 500px;
     border-style:solid;
     border-width:1px;
  }
  #tripal_organism_toc ul {
    margin-left: 0px;
    margin-top: 5px;
    padding-left: 15px;
  }
  #tripal_organism_toc_title {
     font-size: 1.5em;
     line-height: 110%;
  }
  #tripal_organism_toc_desc {
    /*font-style: italic; */
  }
  #tripal_organism_details {
     float: left;
     width: 70%;
     background-color: #FFFFFF;
     -moz-border-radius: 15px;
     border-radius: 15px;
     -moz-box-shadow: 3px 3px 4px #000;
	  -webkit-box-shadow: 3px 3px 4px #000;
	  box-shadow: 3px 3px 4px #000;
     padding: 20px;
     min-height: 500px;
     margin-right: 10px;
     margin-bottom: 10px;
     border-style:solid;
     border-width:1px;
  }
  #tripal_organism-base-box img {
    float: left;
    margin-bottom: 10px;
  }
  #tripal_organism-table-base {
    float: left;
    width: 330px;
    margin-left: 10px;
    margin-bottom: 10px;
  }
</style>


<div id="tripal_organism_details">

   <!-- Basic Details Theme -->
   <?php include('tripal_organism/tripal_organism_base.tpl.php'); ?>

   <?php print $content ?>
</div>

<!-- Table of contents -->
<div id="tripal_organism_toc">
   <div id="tripal_organism_toc_title">Resources for <br><i><?php print $organism->genus ?> <?php print $organism->species ?></i></div>
   <span id="tripal_organism_toc_desc">Select a link below for more information</span>
   <ul id="tripal_organism_toc_list">

   </ul>
</div>

<?php } ?>