_schema(). */ /** * */ function tripal_core_get_chado_tables() { if(is_array($db_url) and array_key_exists('chado',$db_url)){ $previous_db = tripal_db_set_active('chado'); $sql = 'SELECT tablename FROM pg_tables'; $resource = db_query($sql); tripal_db_set_active($previous_db); } else { $sql = "SELECT tablename FROM pg_tables WHERE schemaname='chado'"; $resource = db_query($sql); } $tables = array(); while ($r = db_fetch_object($resource)) { $tables[$r->tablename] = $r->tablename; } asort($tables); return $tables; } /** * Implements hook_organism_dbxref_schema() * Purpose: To describe the structure of organism_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_organism_dbxref_schema () { $description = array(); $description = array( 'table' => 'organism_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'organism_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'organism_dbxref_id', ), 'unique keys' => array( 'organism_dbxref_c1' => array( '0' => 'organism_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'organism_dbxref_idx1' => array( '0' => 'organism_id', ), 'organism_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_organismprop_schema() * Purpose: To describe the structure of organismprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_organismprop_schema () { $description = array(); $description = array( 'table' => 'organismprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'organismprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'organismprop_id', ), 'unique keys' => array( 'organismprop_c1' => array( '0' => 'organism_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'organismprop_idx1' => array( '0' => 'organism_id', ), 'organismprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phendesc_schema() * Purpose: To describe the structure of phendesc to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phendesc_schema () { $description = array(); $description = array( 'table' => 'phendesc', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phendesc_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'genotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'environment_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phendesc_id', ), 'unique keys' => array( 'phendesc_c1' => array( '0' => 'genotype_id', '1' => 'environment_id', '2' => 'type_id', '3' => 'pub_id', ), ), 'indexes' => array( 'phendesc_idx1' => array( '0' => 'genotype_id', ), 'phendesc_idx2' => array( '0' => 'environment_id', ), 'phendesc_idx3' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phenotype_schema() * Purpose: To describe the structure of phenotype to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phenotype_schema () { $description = array(); $description = array( 'table' => 'phenotype', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'observable_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'attr_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'cvalue_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'phenotype_id', ), 'unique keys' => array( 'phenotype_c1' => array( '0' => 'uniquename', ), ), 'indexes' => array( 'phenotype_idx1' => array( '0' => 'cvalue_id', ), 'phenotype_idx2' => array( '0' => 'observable_id', ), 'phenotype_idx3' => array( '0' => 'attr_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_organism_schema() * Purpose: To describe the structure of organism to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_organism_schema () { $description = array(); $description = array( 'table' => 'organism', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'abbreviation' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'genus' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'species' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'common_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'comment' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'organism_id', ), 'unique keys' => array( 'organism_c1' => array( '0' => 'genus', '1' => 'species', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_materialized_view_schema() * Purpose: To describe the structure of materialized_view to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_materialized_view_schema () { $description = array(); $description = array( 'table' => 'materialized_view', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'materialized_view_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'last_update' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', ), 'refresh_time' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '64', 'not null' => '', ), 'mv_schema' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '64', 'not null' => '', ), 'mv_table' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '128', 'not null' => '', ), 'mv_specs' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'indexed' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'query' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'special_index' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( 'name' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_libraryprop_schema() * Purpose: To describe the structure of libraryprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_libraryprop_schema () { $description = array(); $description = array( 'table' => 'libraryprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'libraryprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'libraryprop_id', ), 'unique keys' => array( 'libraryprop_c1' => array( '0' => 'library_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'libraryprop_idx1' => array( '0' => 'library_id', ), 'libraryprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_libraryprop_pub_schema() * Purpose: To describe the structure of libraryprop_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_libraryprop_pub_schema () { $description = array(); $description = array( 'table' => 'libraryprop_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'libraryprop_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'libraryprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'libraryprop_pub_id', ), 'unique keys' => array( 'libraryprop_pub_c1' => array( '0' => 'libraryprop_id', '1' => 'pub_id', ), ), 'indexes' => array( 'libraryprop_pub_idx1' => array( '0' => 'libraryprop_id', ), 'libraryprop_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_magedocumentation_schema() * Purpose: To describe the structure of magedocumentation to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_magedocumentation_schema () { $description = array(); $description = array( 'table' => 'magedocumentation', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'magedocumentation_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'mageml_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'tableinfo_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'row_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'mageidentifier' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), ), 'primary key' => array( '0' => 'magedocumentation_id', ), 'unique keys' => array( ), 'indexes' => array( 'magedocumentation_idx1' => array( '0' => 'mageml_id', ), 'magedocumentation_idx2' => array( '0' => 'tableinfo_id', ), 'magedocumentation_idx3' => array( '0' => 'row_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_mageml_schema() * Purpose: To describe the structure of mageml to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_mageml_schema () { $description = array(); $description = array( 'table' => 'mageml', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'mageml_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'mage_package' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'mage_ml' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), ), 'primary key' => array( '0' => 'mageml_id', ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phenotype_comparison_schema() * Purpose: To describe the structure of phenotype_comparison to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phenotype_comparison_schema () { $description = array(); $description = array( 'table' => 'phenotype_comparison', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_comparison_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'genotype1_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'environment1_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'genotype2_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'environment2_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'phenotype1_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'phenotype2_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phenotype_comparison_id', ), 'unique keys' => array( 'phenotype_comparison_c1' => array( '0' => 'genotype1_id', '1' => 'environment1_id', '2' => 'genotype2_id', '3' => 'environment2_id', '4' => 'phenotype1_id', '5' => 'pub_id', ), ), 'indexes' => array( 'phenotype_comparison_idx1' => array( '0' => 'genotype1_id', ), 'phenotype_comparison_idx2' => array( '0' => 'genotype2_id', ), 'phenotype_comparison_idx4' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phenotype_comparison_cvterm_schema() * Purpose: To describe the structure of phenotype_comparison_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phenotype_comparison_cvterm_schema () { $description = array(); $description = array( 'table' => 'phenotype_comparison_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_comparison_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phenotype_comparison_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'phenotype_comparison_cvterm_id', ), 'unique keys' => array( 'phenotype_comparison_cvterm_c1' => array( '0' => 'phenotype_comparison_id', '1' => 'cvterm_id', ), ), 'indexes' => array( 'phenotype_comparison_cvterm_idx1' => array( '0' => 'phenotype_comparison_id', ), 'phenotype_comparison_cvterm_idx2' => array( '0' => 'cvterm_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylonode_relationship_schema() * Purpose: To describe the structure of phylonode_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylonode_relationship_schema () { $description = array(); $description = array( 'table' => 'phylonode_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'phylotree_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phylonode_relationship_id', ), 'unique keys' => array( 'subject_id' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', ), ), 'indexes' => array( 'phylonode_relationship_idx1' => array( '0' => 'subject_id', ), 'phylonode_relationship_idx2' => array( '0' => 'object_id', ), 'phylonode_relationship_idx3' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylonodeprop_schema() * Purpose: To describe the structure of phylonodeprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylonodeprop_schema () { $description = array(); $description = array( 'table' => 'phylonodeprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonodeprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phylonode_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', 'default' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'phylonodeprop_id', ), 'unique keys' => array( 'phylonode_id' => array( '0' => 'phylonode_id', '1' => 'type_id', '2' => 'value', '3' => 'rank', ), ), 'indexes' => array( 'phylonodeprop_idx1' => array( '0' => 'phylonode_id', ), 'phylonodeprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylotree_schema() * Purpose: To describe the structure of phylotree to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylotree_schema () { $description = array(); $description = array( 'table' => 'phylotree', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylotree_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'analysis_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'comment' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'phylotree_id', ), 'unique keys' => array( ), 'indexes' => array( 'phylotree_idx1' => array( '0' => 'phylotree_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylotree_pub_schema() * Purpose: To describe the structure of phylotree_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylotree_pub_schema () { $description = array(); $description = array( 'table' => 'phylotree_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylotree_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phylotree_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phylotree_pub_id', ), 'unique keys' => array( 'phylotree_id' => array( '0' => 'phylotree_id', '1' => 'pub_id', ), ), 'indexes' => array( 'phylotree_pub_idx1' => array( '0' => 'phylotree_id', ), 'phylotree_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylonode_pub_schema() * Purpose: To describe the structure of phylonode_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylonode_pub_schema () { $description = array(); $description = array( 'table' => 'phylonode_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phylonode_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phylonode_pub_id', ), 'unique keys' => array( 'phylonode_id' => array( '0' => 'phylonode_id', '1' => 'pub_id', ), ), 'indexes' => array( 'phylonode_pub_idx1' => array( '0' => 'phylonode_id', ), 'phylonode_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylonode_organism_schema() * Purpose: To describe the structure of phylonode_organism to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylonode_organism_schema () { $description = array(); $description = array( 'table' => 'phylonode_organism', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phylonode_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phylonode_organism_id', ), 'unique keys' => array( 'phylonode_id' => array( '0' => 'phylonode_id', ), ), 'indexes' => array( 'phylonode_organism_idx1' => array( '0' => 'phylonode_id', ), 'phylonode_organism_idx2' => array( '0' => 'organism_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phenotype_cvterm_schema() * Purpose: To describe the structure of phenotype_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phenotype_cvterm_schema () { $description = array(); $description = array( 'table' => 'phenotype_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phenotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'phenotype_cvterm_id', ), 'unique keys' => array( 'phenotype_cvterm_c1' => array( '0' => 'phenotype_id', '1' => 'cvterm_id', '2' => 'rank', ), ), 'indexes' => array( 'phenotype_cvterm_idx1' => array( '0' => 'phenotype_id', ), 'phenotype_cvterm_idx2' => array( '0' => 'cvterm_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phenstatement_schema() * Purpose: To describe the structure of phenstatement to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phenstatement_schema () { $description = array(); $description = array( 'table' => 'phenstatement', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenstatement_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'genotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'environment_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'phenotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phenstatement_id', ), 'unique keys' => array( 'phenstatement_c1' => array( '0' => 'genotype_id', '1' => 'phenotype_id', '2' => 'environment_id', '3' => 'type_id', '4' => 'pub_id', ), ), 'indexes' => array( 'phenstatement_idx1' => array( '0' => 'genotype_id', ), 'phenstatement_idx2' => array( '0' => 'phenotype_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylonode_schema() * Purpose: To describe the structure of phylonode to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylonode_schema () { $description = array(); $description = array( 'table' => 'phylonode', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phylotree_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'parent_phylonode_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'left_idx' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'right_idx' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'label' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'distance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( '0' => 'phylonode_id', ), 'unique keys' => array( 'phylotree_id' => array( '0' => 'phylotree_id', '1' => 'left_idx', ), 'phylonode_phylotree_id_key1' => array( '0' => 'phylotree_id', '1' => 'right_idx', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_phylonode_dbxref_schema() * Purpose: To describe the structure of phylonode_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_phylonode_dbxref_schema () { $description = array(); $description = array( 'table' => 'phylonode_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'phylonode_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'phylonode_dbxref_id', ), 'unique keys' => array( 'phylonode_id' => array( '0' => 'phylonode_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'phylonode_dbxref_idx1' => array( '0' => 'phylonode_id', ), 'phylonode_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_library_synonym_schema() * Purpose: To describe the structure of library_synonym to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_library_synonym_schema () { $description = array(); $description = array( 'table' => 'library_synonym', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_synonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'synonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'ru', ), 'is_internal' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), ), 'primary key' => array( '0' => 'library_synonym_id', ), 'unique keys' => array( 'library_synonym_c1' => array( '0' => 'synonym_id', '1' => 'library_id', '2' => 'pub_id', ), ), 'indexes' => array( 'library_synonym_idx1' => array( '0' => 'synonym_id', ), 'library_synonym_idx2' => array( '0' => 'library_id', ), 'library_synonym_idx3' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_library_pub_schema() * Purpose: To describe the structure of library_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_library_pub_schema () { $description = array(); $description = array( 'table' => 'library_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'library_pub_id', ), 'unique keys' => array( 'library_pub_c1' => array( '0' => 'library_id', '1' => 'pub_id', ), ), 'indexes' => array( 'library_pub_idx1' => array( '0' => 'library_id', ), 'library_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featureprop_pub_schema() * Purpose: To describe the structure of featureprop_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featureprop_pub_schema () { $description = array(); $description = array( 'table' => 'featureprop_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureprop_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'featureprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'featureprop_pub_id', ), 'unique keys' => array( 'featureprop_pub_c1' => array( '0' => 'featureprop_id', '1' => 'pub_id', ), ), 'indexes' => array( 'featureprop_pub_idx1' => array( '0' => 'featureprop_id', ), 'featureprop_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featureprop_schema() * Purpose: To describe the structure of featureprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featureprop_schema () { $description = array(); $description = array( 'table' => 'featureprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'featureprop_id', ), 'unique keys' => array( 'featureprop_c1' => array( '0' => 'feature_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'featureprop_idx1' => array( '0' => 'feature_id', ), 'featureprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featurerange_schema() * Purpose: To describe the structure of featurerange to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featurerange_schema () { $description = array(); $description = array( 'table' => 'featurerange', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featurerange_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'featuremap_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'leftstartf_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'leftendf_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'rightstartf_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'rightendf_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rangestr' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), ), 'primary key' => array( '0' => 'featurerange_id', ), 'unique keys' => array( ), 'indexes' => array( 'featurerange_idx1' => array( '0' => 'featuremap_id', ), 'featurerange_idx2' => array( '0' => 'feature_id', ), 'featurerange_idx3' => array( '0' => 'leftstartf_id', ), 'featurerange_idx4' => array( '0' => 'leftendf_id', ), 'featurerange_idx5' => array( '0' => 'rightstartf_id', ), 'featurerange_idx6' => array( '0' => 'rightendf_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featureset_meets_schema() * Purpose: To describe the structure of featureset_meets to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featureset_meets_schema () { $description = array(); $description = array( 'table' => 'featureset_meets', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_fnr_type_schema() * Purpose: To describe the structure of fnr_type to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_fnr_type_schema () { $description = array(); $description = array( 'table' => 'fnr_type', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'residues' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'seqlen' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'md5checksum' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'char', 'length' => '32', 'not null' => '', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'timeaccessioned' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', ), 'timelastmodified' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featurepos_schema() * Purpose: To describe the structure of featurepos to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featurepos_schema () { $description = array(); $description = array( 'table' => 'featurepos', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featurepos_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'featuremap_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'map_feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'mappos' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '1', ), ), 'primary key' => array( '0' => 'featurepos_id', ), 'unique keys' => array( ), 'indexes' => array( 'featurepos_idx1' => array( '0' => 'featuremap_id', ), 'featurepos_idx2' => array( '0' => 'feature_id', ), 'featurepos_idx3' => array( '0' => 'map_feature_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featuremap_pub_schema() * Purpose: To describe the structure of featuremap_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featuremap_pub_schema () { $description = array(); $description = array( 'table' => 'featuremap_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featuremap_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'featuremap_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'featuremap_pub_id', ), 'unique keys' => array( ), 'indexes' => array( 'featuremap_pub_idx1' => array( '0' => 'featuremap_id', ), 'featuremap_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_union_schema() * Purpose: To describe the structure of feature_union to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_union_schema () { $description = array(); $description = array( 'table' => 'feature_union', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'subject_strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'object_strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'fmin' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmax' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featureloc_schema() * Purpose: To describe the structure of featureloc to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featureloc_schema () { $description = array(); $description = array( 'table' => 'featureloc', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureloc_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmin' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'is_fmin_partial' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), 'fmax' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'is_fmax_partial' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), 'strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'phase' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'residue_info' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'locgroup' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'featureloc_id', ), 'unique keys' => array( 'featureloc_c1' => array( '0' => 'feature_id', '1' => 'locgroup', '2' => 'rank', ), ), 'indexes' => array( 'binloc_boxrange' => array( '0' => 'fmin', ), 'binloc_boxrange_src' => array( '0' => 'srcfeature_id', '1' => 'fmin', ), 'featureloc_idx1' => array( '0' => 'feature_id', ), 'featureloc_idx2' => array( '0' => 'srcfeature_id', ), 'featureloc_idx3' => array( '0' => 'srcfeature_id', '1' => 'fmin', '2' => 'fmax', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featureloc_pub_schema() * Purpose: To describe the structure of featureloc_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featureloc_pub_schema () { $description = array(); $description = array( 'table' => 'featureloc_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureloc_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'featureloc_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'featureloc_pub_id', ), 'unique keys' => array( 'featureloc_pub_c1' => array( '0' => 'featureloc_id', '1' => 'pub_id', ), ), 'indexes' => array( 'featureloc_pub_idx1' => array( '0' => 'featureloc_id', ), 'featureloc_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_featuremap_schema() * Purpose: To describe the structure of featuremap to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_featuremap_schema () { $description = array(); $description = array( 'table' => 'featuremap', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featuremap_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'unittype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'featuremap_id', ), 'unique keys' => array( 'featuremap_c1' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_fp_key_schema() * Purpose: To describe the structure of fp_key to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_fp_key_schema () { $description = array(); $description = array( 'table' => 'fp_key', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'pkey' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_genotype_schema() * Purpose: To describe the structure of genotype to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_genotype_schema () { $description = array(); $description = array( 'table' => 'genotype', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'genotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), ), 'primary key' => array( '0' => 'genotype_id', ), 'unique keys' => array( 'genotype_c1' => array( '0' => 'uniquename', ), ), 'indexes' => array( 'genotype_idx1' => array( '0' => 'uniquename', ), 'genotype_idx2' => array( '0' => 'name', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_library_cvterm_schema() * Purpose: To describe the structure of library_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_library_cvterm_schema () { $description = array(); $description = array( 'table' => 'library_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'library_cvterm_id', ), 'unique keys' => array( 'library_cvterm_c1' => array( '0' => 'library_id', '1' => 'cvterm_id', '2' => 'pub_id', ), ), 'indexes' => array( 'library_cvterm_idx1' => array( '0' => 'library_id', ), 'library_cvterm_idx2' => array( '0' => 'cvterm_id', ), 'library_cvterm_idx3' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_library_dbxref_schema() * Purpose: To describe the structure of library_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_library_dbxref_schema () { $description = array(); $description = array( 'table' => 'library_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'ru', ), ), 'primary key' => array( '0' => 'library_dbxref_id', ), 'unique keys' => array( 'library_dbxref_c1' => array( '0' => 'library_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'library_dbxref_idx1' => array( '0' => 'library_id', ), 'library_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_library_feature_schema() * Purpose: To describe the structure of library_feature to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_library_feature_schema () { $description = array(); $description = array( 'table' => 'library_feature', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'library_feature_id', ), 'unique keys' => array( 'library_feature_c1' => array( '0' => 'library_id', '1' => 'feature_id', ), ), 'indexes' => array( 'library_feature_idx1' => array( '0' => 'library_id', ), 'library_feature_idx2' => array( '0' => 'feature_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_library_feature_count_schema() * Purpose: To describe the structure of library_feature_count to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_library_feature_count_schema () { $description = array(); $description = array( 'table' => 'library_feature_count', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'num_features' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'feature_type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( 'library_feature_count_index' => array( '0' => 'library_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_library_schema() * Purpose: To describe the structure of library to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_library_schema () { $description = array(); $description = array( 'table' => 'library', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_obsolete' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), 'timeaccessioned' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '1', 'default' => 'ow(', ), 'timelastmodified' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '1', 'default' => 'ow(', ), ), 'primary key' => array( '0' => 'library_id', ), 'unique keys' => array( 'library_c1' => array( '0' => 'organism_id', '1' => 'uniquename', '2' => 'type_id', ), ), 'indexes' => array( 'library_idx1' => array( '0' => 'organism_id', ), 'library_idx2' => array( '0' => 'type_id', ), 'library_idx3' => array( '0' => 'uniquename', ), 'library_name_ind1' => array( '0' => 'name', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_intronloc_view_schema() * Purpose: To describe the structure of intronloc_view to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_intronloc_view_schema () { $description = array(); $description = array( 'table' => 'intronloc_view', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'exon1_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'exon2_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmin' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmax' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_gff3atts_schema() * Purpose: To describe the structure of gff3atts to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_gff3atts_schema () { $description = array(); $description = array( 'table' => 'gff3atts', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'attribute' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_gff3view_schema() * Purpose: To describe the structure of gff3view to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_gff3view_schema () { $description = array(); $description = array( 'table' => 'gff3view', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'ref' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'source' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'fstart' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fend' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'score' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '', ), 'strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'phase' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'seqlen' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_gffatts_schema() * Purpose: To describe the structure of gffatts to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_gffatts_schema () { $description = array(); $description = array( 'table' => 'gffatts', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'attribute' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_intron_combined_view_schema() * Purpose: To describe the structure of intron_combined_view to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_intron_combined_view_schema () { $description = array(); $description = array( 'table' => 'intron_combined_view', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'exon1_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'exon2_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmin' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmax' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'intron_rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'transcript_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_project_schema() * Purpose: To describe the structure of project to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_project_schema () { $description = array(); $description = array( 'table' => 'project', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'project_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), ), 'primary key' => array( '0' => 'project_id', ), 'unique keys' => array( 'project_c1' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_protein_coding_gene_schema() * Purpose: To describe the structure of protein_coding_gene to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_protein_coding_gene_schema () { $description = array(); $description = array( 'table' => 'protein_coding_gene', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'residues' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'seqlen' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'md5checksum' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'char', 'length' => '32', 'not null' => '', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'is_analysis' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '', ), 'is_obsolete' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '', ), 'timeaccessioned' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', ), 'timelastmodified' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_studyfactorvalue_schema() * Purpose: To describe the structure of studyfactorvalue to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_studyfactorvalue_schema () { $description = array(); $description = array( 'table' => 'studyfactorvalue', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyfactorvalue_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'studyfactor_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'factorvalue' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'studyfactorvalue_id', ), 'unique keys' => array( ), 'indexes' => array( 'studyfactorvalue_idx1' => array( '0' => 'studyfactor_id', ), 'studyfactorvalue_idx2' => array( '0' => 'assay_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_studyfactor_schema() * Purpose: To describe the structure of studyfactor to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_studyfactor_schema () { $description = array(); $description = array( 'table' => 'studyfactor', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyfactor_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'studydesign_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'studyfactor_id', ), 'unique keys' => array( ), 'indexes' => array( 'studyfactor_idx1' => array( '0' => 'studydesign_id', ), 'studyfactor_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_studyprop_schema() * Purpose: To describe the structure of studyprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_studyprop_schema () { $description = array(); $description = array( 'table' => 'studyprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'study_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'studyprop_id', ), 'unique keys' => array( 'study_id' => array( '0' => 'study_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'studyprop_idx1' => array( '0' => 'study_id', ), 'studyprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_studyprop_feature_schema() * Purpose: To describe the structure of studyprop_feature to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_studyprop_feature_schema () { $description = array(); $description = array( 'table' => 'studyprop_feature', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyprop_feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'studyprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'studyprop_feature_id', ), 'unique keys' => array( 'studyprop_id' => array( '0' => 'studyprop_id', '1' => 'feature_id', ), ), 'indexes' => array( 'studyprop_feature_idx1' => array( '0' => 'studyprop_id', ), 'studyprop_feature_idx2' => array( '0' => 'feature_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_synonym_schema() * Purpose: To describe the structure of synonym to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_synonym_schema () { $description = array(); $description = array( 'table' => 'synonym', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'synonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'synonym_sgml' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), ), 'primary key' => array( '0' => 'synonym_id', ), 'unique keys' => array( 'synonym_c1' => array( '0' => 'name', '1' => 'type_id', ), ), 'indexes' => array( 'synonym_idx1' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_studydesignprop_schema() * Purpose: To describe the structure of studydesignprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_studydesignprop_schema () { $description = array(); $description = array( 'table' => 'studydesignprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'studydesignprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'studydesign_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'studydesignprop_id', ), 'unique keys' => array( 'studydesignprop_c1' => array( '0' => 'studydesign_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'studydesignprop_idx1' => array( '0' => 'studydesign_id', ), 'studydesignprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_studydesign_schema() * Purpose: To describe the structure of studydesign to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_studydesign_schema () { $description = array(); $description = array( 'table' => 'studydesign', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'studydesign_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'study_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'studydesign_id', ), 'unique keys' => array( ), 'indexes' => array( 'studydesign_idx1' => array( '0' => 'study_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stockprop_schema() * Purpose: To describe the structure of stockprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stockprop_schema () { $description = array(); $description = array( 'table' => 'stockprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'stockprop_id', ), 'unique keys' => array( 'stockprop_c1' => array( '0' => 'stock_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'stockprop_idx1' => array( '0' => 'stock_id', ), 'stockprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stockprop_pub_schema() * Purpose: To describe the structure of stockprop_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stockprop_pub_schema () { $description = array(); $description = array( 'table' => 'stockprop_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockprop_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stockprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'stockprop_pub_id', ), 'unique keys' => array( 'stockprop_pub_c1' => array( '0' => 'stockprop_id', '1' => 'pub_id', ), ), 'indexes' => array( 'stockprop_pub_idx1' => array( '0' => 'stockprop_id', ), 'stockprop_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_study_schema() * Purpose: To describe the structure of study to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_study_schema () { $description = array(); $description = array( 'table' => 'study', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'study_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'contact_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'study_id', ), 'unique keys' => array( 'study_c1' => array( '0' => 'name', ), ), 'indexes' => array( 'study_idx1' => array( '0' => 'contact_id', ), 'study_idx2' => array( '0' => 'pub_id', ), 'study_idx3' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_study_assay_schema() * Purpose: To describe the structure of study_assay to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_study_assay_schema () { $description = array(); $description = array( 'table' => 'study_assay', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'study_assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'study_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'study_assay_id', ), 'unique keys' => array( 'study_assay_c1' => array( '0' => 'study_id', '1' => 'assay_id', ), ), 'indexes' => array( 'study_assay_idx1' => array( '0' => 'study_id', ), 'study_assay_idx2' => array( '0' => 'assay_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_tableinfo_schema() * Purpose: To describe the structure of tableinfo to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_tableinfo_schema () { $description = array(); $description = array( 'table' => 'tableinfo', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'tableinfo_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '30', 'not null' => '1', ), 'primary_key_column' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '30', 'not null' => '', ), 'is_view' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), 'view_on_table_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'superclass_table_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'is_updateable' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '1', ), 'modification_date' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'date', 'not null' => '1', 'default' => 'ow(', ), ), 'primary key' => array( '0' => 'tableinfo_id', ), 'unique keys' => array( 'tableinfo_c1' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_treatment_schema() * Purpose: To describe the structure of treatment to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_treatment_schema () { $description = array(); $description = array( 'table' => 'treatment', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'treatment_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), 'biomaterial_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'protocol_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'treatment_id', ), 'unique keys' => array( ), 'indexes' => array( 'treatment_idx1' => array( '0' => 'biomaterial_id', ), 'treatment_idx2' => array( '0' => 'type_id', ), 'treatment_idx3' => array( '0' => 'protocol_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_tripal_obo_schema() * Purpose: To describe the structure of tripal_obo to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_tripal_obo_schema () { $description = array(); $description = array( 'table' => 'tripal_obo', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cv_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'file' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'url' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), ), 'primary key' => array( '0' => 'cv_id', ), 'unique keys' => array( ), 'indexes' => array( 'cv_id' => array( '0' => 'cv_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_tripal_organism_views_common_name_schema() * Purpose: To describe the structure of tripal_organism_views_common_name to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_tripal_organism_views_common_name_schema () { $description = array(); $description = array( 'table' => 'tripal_organism_views_common_name', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'nid' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'common_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', 'default' => 'NA', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_type_feature_count_schema() * Purpose: To describe the structure of type_feature_count to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_type_feature_count_schema () { $description = array(); $description = array( 'table' => 'type_feature_count', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'num_features' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stockcollectionprop_schema() * Purpose: To describe the structure of stockcollectionprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stockcollectionprop_schema () { $description = array(); $description = array( 'table' => 'stockcollectionprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockcollectionprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stockcollection_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'stockcollectionprop_id', ), 'unique keys' => array( 'stockcollectionprop_c1' => array( '0' => 'stockcollection_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'stockcollectionprop_idx1' => array( '0' => 'stockcollection_id', ), 'stockcollectionprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stockcollection_stock_schema() * Purpose: To describe the structure of stockcollection_stock to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stockcollection_stock_schema () { $description = array(); $description = array( 'table' => 'stockcollection_stock', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockcollection_stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stockcollection_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'stockcollection_stock_id', ), 'unique keys' => array( 'stockcollection_stock_c1' => array( '0' => 'stockcollection_id', '1' => 'stock_id', ), ), 'indexes' => array( 'stockcollection_stock_idx1' => array( '0' => 'stockcollection_id', ), 'stockcollection_stock_idx2' => array( '0' => 'stock_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_public_feature_schema() * Purpose: To describe the structure of public_feature to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_public_feature_schema () { $description = array(); $description = array( 'table' => 'public_feature', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'vid' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'nid' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), 'sync_date' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'nid', ), 'unique keys' => array( 'nid_vid' => array( '0' => 'nid', '1' => 'vid', ), 'vid' => array( '0' => 'vid', ), ), 'indexes' => array( 'feature_id' => array( '0' => 'feature_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_public_library_schema() * Purpose: To describe the structure of public_library to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_public_library_schema () { $description = array(); $description = array( 'table' => 'public_library', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'vid' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'nid' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'nid', ), 'unique keys' => array( 'nid_vid' => array( '0' => 'nid', '1' => 'vid', ), 'vid' => array( '0' => 'vid', ), ), 'indexes' => array( 'library_id' => array( '0' => 'library_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_public_organism_schema() * Purpose: To describe the structure of public_organism to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_public_organism_schema () { $description = array(); $description = array( 'table' => 'public_organism', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'vid' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'nid' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'unsigned' => '1', 'not null' => '1', 'default' => '0', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'nid', ), 'unique keys' => array( 'nid_vid' => array( '0' => 'nid', '1' => 'vid', ), 'vid' => array( '0' => 'vid', ), ), 'indexes' => array( 'organism_id' => array( '0' => 'organism_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_pubprop_schema() * Purpose: To describe the structure of pubprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_pubprop_schema () { $description = array(); $description = array( 'table' => 'pubprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'pubprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'pubprop_id', ), 'unique keys' => array( 'pubprop_c1' => array( '0' => 'pub_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'pubprop_idx1' => array( '0' => 'pub_id', ), 'pubprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_pubauthor_schema() * Purpose: To describe the structure of pubauthor to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_pubauthor_schema () { $description = array(); $description = array( 'table' => 'pubauthor', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'pubauthor_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'editor' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '', 'default' => 'als', ), 'surname' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '100', 'not null' => '1', ), 'givennames' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '100', 'not null' => '', ), 'suffix' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '100', 'not null' => '', ), ), 'primary key' => array( '0' => 'pubauthor_id', ), 'unique keys' => array( 'pubauthor_c1' => array( '0' => 'pub_id', '1' => 'rank', ), ), 'indexes' => array( 'pubauthor_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_pub_relationship_schema() * Purpose: To describe the structure of pub_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_pub_relationship_schema () { $description = array(); $description = array( 'table' => 'pub_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'pub_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'pub_relationship_id', ), 'unique keys' => array( 'pub_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', ), ), 'indexes' => array( 'pub_relationship_idx1' => array( '0' => 'subject_id', ), 'pub_relationship_idx2' => array( '0' => 'object_id', ), 'pub_relationship_idx3' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_protocol_schema() * Purpose: To describe the structure of protocol to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_protocol_schema () { $description = array(); $description = array( 'table' => 'protocol', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'protocol_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'uri' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'protocoldescription' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'hardwaredescription' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'softwaredescription' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'protocol_id', ), 'unique keys' => array( 'protocol_c1' => array( '0' => 'name', ), ), 'indexes' => array( 'protocol_idx1' => array( '0' => 'type_id', ), 'protocol_idx2' => array( '0' => 'pub_id', ), 'protocol_idx3' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_protocolparam_schema() * Purpose: To describe the structure of protocolparam to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_protocolparam_schema () { $description = array(); $description = array( 'table' => 'protocolparam', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'protocolparam_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'protocol_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'datatype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'unittype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'protocolparam_id', ), 'unique keys' => array( ), 'indexes' => array( 'protocolparam_idx1' => array( '0' => 'protocol_id', ), 'protocolparam_idx2' => array( '0' => 'datatype_id', ), 'protocolparam_idx3' => array( '0' => 'unittype_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_pub_schema() * Purpose: To describe the structure of pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_pub_schema () { $description = array(); $description = array( 'table' => 'pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'title' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'volumetitle' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'volume' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'series_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'issue' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'pyear' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'pages' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'miniref' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_obsolete' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '', 'default' => 'als', ), 'publisher' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'pubplace' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), ), 'primary key' => array( '0' => 'pub_id', ), 'unique keys' => array( 'pub_c1' => array( '0' => 'uniquename', ), ), 'indexes' => array( 'pub_idx1' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_pub_dbxref_schema() * Purpose: To describe the structure of pub_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_pub_dbxref_schema () { $description = array(); $description = array( 'table' => 'pub_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'pub_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'ru', ), ), 'primary key' => array( '0' => 'pub_dbxref_id', ), 'unique keys' => array( 'pub_dbxref_c1' => array( '0' => 'pub_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'pub_dbxref_idx1' => array( '0' => 'pub_id', ), 'pub_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_quantification_schema() * Purpose: To describe the structure of quantification to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_quantification_schema () { $description = array(); $description = array( 'table' => 'quantification', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'quantification_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'acquisition_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'operator_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'protocol_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'analysis_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'quantificationdate' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', 'default' => 'ow(', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'uri' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'quantification_id', ), 'unique keys' => array( 'quantification_c1' => array( '0' => 'name', '1' => 'analysis_id', ), ), 'indexes' => array( 'quantification_idx1' => array( '0' => 'acquisition_id', ), 'quantification_idx2' => array( '0' => 'operator_id', ), 'quantification_idx3' => array( '0' => 'protocol_id', ), 'quantification_idx4' => array( '0' => 'analysis_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_quantification_relationship_schema() * Purpose: To describe the structure of quantification_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_quantification_relationship_schema () { $description = array(); $description = array( 'table' => 'quantification_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'quantification_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'quantification_relationship_id', ), 'unique keys' => array( 'quantification_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', ), ), 'indexes' => array( 'quantification_relationship_idx1' => array( '0' => 'subject_id', ), 'quantification_relationship_idx2' => array( '0' => 'type_id', ), 'quantification_relationship_idx3' => array( '0' => 'object_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stock_pub_schema() * Purpose: To describe the structure of stock_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stock_pub_schema () { $description = array(); $description = array( 'table' => 'stock_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'stock_pub_id', ), 'unique keys' => array( 'stock_pub_c1' => array( '0' => 'stock_id', '1' => 'pub_id', ), ), 'indexes' => array( 'stock_pub_idx1' => array( '0' => 'stock_id', ), 'stock_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stock_relationship_schema() * Purpose: To describe the structure of stock_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stock_relationship_schema () { $description = array(); $description = array( 'table' => 'stock_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'stock_relationship_id', ), 'unique keys' => array( 'stock_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', '3' => 'rank', ), ), 'indexes' => array( 'stock_relationship_idx1' => array( '0' => 'subject_id', ), 'stock_relationship_idx2' => array( '0' => 'object_id', ), 'stock_relationship_idx3' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stock_relationship_pub_schema() * Purpose: To describe the structure of stock_relationship_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stock_relationship_pub_schema () { $description = array(); $description = array( 'table' => 'stock_relationship_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_relationship_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stock_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'stock_relationship_pub_id', ), 'unique keys' => array( 'stock_relationship_pub_c1' => array( '0' => 'stock_relationship_id', '1' => 'pub_id', ), ), 'indexes' => array( 'stock_relationship_pub_idx1' => array( '0' => 'stock_relationship_id', ), 'stock_relationship_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stockcollection_schema() * Purpose: To describe the structure of stockcollection to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stockcollection_schema () { $description = array(); $description = array( 'table' => 'stockcollection', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockcollection_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'contact_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), ), 'primary key' => array( '0' => 'stockcollection_id', ), 'unique keys' => array( 'stockcollection_c1' => array( '0' => 'uniquename', '1' => 'type_id', ), ), 'indexes' => array( 'stockcollection_idx1' => array( '0' => 'contact_id', ), 'stockcollection_idx2' => array( '0' => 'type_id', ), 'stockcollection_idx3' => array( '0' => 'uniquename', ), 'stockcollection_name_ind1' => array( '0' => 'name', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stock_genotype_schema() * Purpose: To describe the structure of stock_genotype to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stock_genotype_schema () { $description = array(); $description = array( 'table' => 'stock_genotype', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_genotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'genotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'stock_genotype_id', ), 'unique keys' => array( 'stock_genotype_c1' => array( '0' => 'stock_id', '1' => 'genotype_id', ), ), 'indexes' => array( 'stock_genotype_idx1' => array( '0' => 'stock_id', ), 'stock_genotype_idx2' => array( '0' => 'genotype_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stock_dbxref_schema() * Purpose: To describe the structure of stock_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stock_dbxref_schema () { $description = array(); $description = array( 'table' => 'stock_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'ru', ), ), 'primary key' => array( '0' => 'stock_dbxref_id', ), 'unique keys' => array( 'stock_dbxref_c1' => array( '0' => 'stock_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'stock_dbxref_idx1' => array( '0' => 'stock_id', ), 'stock_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_quantificationprop_schema() * Purpose: To describe the structure of quantificationprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_quantificationprop_schema () { $description = array(); $description = array( 'table' => 'quantificationprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'quantificationprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'quantification_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'quantificationprop_id', ), 'unique keys' => array( 'quantificationprop_c1' => array( '0' => 'quantification_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'quantificationprop_idx1' => array( '0' => 'quantification_id', ), 'quantificationprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stats_paths_to_root_schema() * Purpose: To describe the structure of stats_paths_to_root to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stats_paths_to_root_schema () { $description = array(); $description = array( 'table' => 'stats_paths_to_root', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'total_paths' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'big', 'not null' => '', ), 'avg_distance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'numeric', 'not null' => '', 'precision' => '0', 'scale' => '0', ), 'min_distance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'max_distance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stock_schema() * Purpose: To describe the structure of stock to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stock_schema () { $description = array(); $description = array( 'table' => 'stock', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_obsolete' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), ), 'primary key' => array( '0' => 'stock_id', ), 'unique keys' => array( 'stock_c1' => array( '0' => 'organism_id', '1' => 'uniquename', '2' => 'type_id', ), ), 'indexes' => array( 'stock_idx1' => array( '0' => 'dbxref_id', ), 'stock_idx2' => array( '0' => 'organism_id', ), 'stock_idx3' => array( '0' => 'type_id', ), 'stock_idx4' => array( '0' => 'uniquename', ), 'stock_name_ind1' => array( '0' => 'name', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_stock_cvterm_schema() * Purpose: To describe the structure of stock_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_stock_cvterm_schema () { $description = array(); $description = array( 'table' => 'stock_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'stock_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'stock_cvterm_id', ), 'unique keys' => array( 'stock_cvterm_c1' => array( '0' => 'stock_id', '1' => 'cvterm_id', '2' => 'pub_id', ), ), 'indexes' => array( 'stock_cvterm_idx1' => array( '0' => 'stock_id', ), 'stock_cvterm_idx2' => array( '0' => 'cvterm_id', ), 'stock_cvterm_idx3' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_synonym_schema() * Purpose: To describe the structure of feature_synonym to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_synonym_schema () { $description = array(); $description = array( 'table' => 'feature_synonym', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_synonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'synonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), 'is_internal' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), ), 'primary key' => array( '0' => 'feature_synonym_id', ), 'unique keys' => array( 'feature_synonym_c1' => array( '0' => 'synonym_id', '1' => 'feature_id', '2' => 'pub_id', ), ), 'indexes' => array( 'feature_synonym_idx1' => array( '0' => 'synonym_id', ), 'feature_synonym_idx2' => array( '0' => 'feature_id', ), 'feature_synonym_idx3' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_relationshipprop_pub_schema() * Purpose: To describe the structure of feature_relationshipprop_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_relationshipprop_pub_schema () { $description = array(); $description = array( 'table' => 'feature_relationshipprop_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationshipprop_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_relationshipprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_relationshipprop_pub_id', ), 'unique keys' => array( 'feature_relationshipprop_pub_c1' => array( '0' => 'feature_relationshipprop_id', '1' => 'pub_id', ), ), 'indexes' => array( 'feature_relationshipprop_pub_idx1' => array( '0' => 'feature_relationshipprop_id', ), 'feature_relationshipprop_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_relationship_schema() * Purpose: To describe the structure of cell_line_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_relationship_schema () { $description = array(); $description = array( 'table' => 'cell_line_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'cell_line_relationship_id', ), 'unique keys' => array( 'cell_line_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_pub_schema() * Purpose: To describe the structure of cell_line_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_pub_schema () { $description = array(); $description = array( 'table' => 'cell_line_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'cell_line_pub_id', ), 'unique keys' => array( 'cell_line_pub_c1' => array( '0' => 'cell_line_id', '1' => 'pub_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_synonym_schema() * Purpose: To describe the structure of cell_line_synonym to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_synonym_schema () { $description = array(); $description = array( 'table' => 'cell_line_synonym', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_synonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'synonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), 'is_internal' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), ), 'primary key' => array( '0' => 'cell_line_synonym_id', ), 'unique keys' => array( 'cell_line_synonym_c1' => array( '0' => 'synonym_id', '1' => 'cell_line_id', '2' => 'pub_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_lineprop_schema() * Purpose: To describe the structure of cell_lineprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_lineprop_schema () { $description = array(); $description = array( 'table' => 'cell_lineprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_lineprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'cell_lineprop_id', ), 'unique keys' => array( 'cell_lineprop_c1' => array( '0' => 'cell_line_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_lineprop_pub_schema() * Purpose: To describe the structure of cell_lineprop_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_lineprop_pub_schema () { $description = array(); $description = array( 'table' => 'cell_lineprop_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_lineprop_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_lineprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'cell_lineprop_pub_id', ), 'unique keys' => array( 'cell_lineprop_pub_c1' => array( '0' => 'cell_lineprop_id', '1' => 'pub_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_library_schema() * Purpose: To describe the structure of cell_line_library to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_library_schema () { $description = array(); $description = array( 'table' => 'cell_line_library', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'library_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'cell_line_library_id', ), 'unique keys' => array( 'cell_line_library_c1' => array( '0' => 'cell_line_id', '1' => 'library_id', '2' => 'pub_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_feature_schema() * Purpose: To describe the structure of cell_line_feature to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_feature_schema () { $description = array(); $description = array( 'table' => 'cell_line_feature', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'cell_line_feature_id', ), 'unique keys' => array( 'cell_line_feature_c1' => array( '0' => 'cell_line_id', '1' => 'feature_id', '2' => 'pub_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_schema() * Purpose: To describe the structure of cell_line to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_schema () { $description = array(); $description = array( 'table' => 'cell_line', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'timeaccessioned' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '1', 'default' => 'ow(', ), 'timelastmodified' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '1', 'default' => 'ow(', ), ), 'primary key' => array( '0' => 'cell_line_id', ), 'unique keys' => array( 'cell_line_c1' => array( '0' => 'uniquename', '1' => 'organism_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_cvterm_schema() * Purpose: To describe the structure of cell_line_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_cvterm_schema () { $description = array(); $description = array( 'table' => 'cell_line_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'cell_line_cvterm_id', ), 'unique keys' => array( 'cell_line_cvterm_c1' => array( '0' => 'cell_line_id', '1' => 'cvterm_id', '2' => 'pub_id', '3' => 'rank', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_cvtermprop_schema() * Purpose: To describe the structure of cell_line_cvtermprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_cvtermprop_schema () { $description = array(); $description = array( 'table' => 'cell_line_cvtermprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_cvtermprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'cell_line_cvtermprop_id', ), 'unique keys' => array( 'cell_line_cvtermprop_c1' => array( '0' => 'cell_line_cvterm_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cell_line_dbxref_schema() * Purpose: To describe the structure of cell_line_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cell_line_dbxref_schema () { $description = array(); $description = array( 'table' => 'cell_line_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cell_line_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'ru', ), ), 'primary key' => array( '0' => 'cell_line_dbxref_id', ), 'unique keys' => array( 'cell_line_dbxref_c1' => array( '0' => 'cell_line_id', '1' => 'dbxref_id', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_channel_schema() * Purpose: To describe the structure of channel to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_channel_schema () { $description = array(); $description = array( 'table' => 'channel', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'channel_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'definition' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), ), 'primary key' => array( '0' => 'channel_id', ), 'unique keys' => array( 'channel_c1' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_common_ancestor_cvterm_schema() * Purpose: To describe the structure of common_ancestor_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_common_ancestor_cvterm_schema () { $description = array(); $description = array( 'table' => 'common_ancestor_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm1_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'cvterm2_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'ancestor_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'pathdistance1' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'pathdistance2' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'total_pathdistance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cv_cvterm_count_with_obs_schema() * Purpose: To describe the structure of cv_cvterm_count_with_obs to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cv_cvterm_count_with_obs_schema () { $description = array(); $description = array( 'table' => 'cv_cvterm_count_with_obs', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'num_terms_incl_obs' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cv_leaf_schema() * Purpose: To describe the structure of cv_leaf to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cv_leaf_schema () { $description = array(); $description = array( 'table' => 'cv_leaf', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cv_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cv_link_count_schema() * Purpose: To describe the structure of cv_link_count to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cv_link_count_schema () { $description = array(); $description = array( 'table' => 'cv_link_count', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cv_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'relation_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'relation_cv_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'num_links' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cv_path_count_schema() * Purpose: To describe the structure of cv_path_count to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cv_path_count_schema () { $description = array(); $description = array( 'table' => 'cv_path_count', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cv_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'relation_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'relation_cv_name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'num_paths' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cv_cvterm_count_schema() * Purpose: To describe the structure of cv_cvterm_count to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cv_cvterm_count_schema () { $description = array(); $description = array( 'table' => 'cv_cvterm_count', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'num_terms_excl_obs' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cv_schema() * Purpose: To describe the structure of cv to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cv_schema () { $description = array(); $description = array( 'table' => 'cv', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cv_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'definition' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'cv_id', ), 'unique keys' => array( 'cv_c1' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_common_descendant_cvterm_schema() * Purpose: To describe the structure of common_descendant_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_common_descendant_cvterm_schema () { $description = array(); $description = array( 'table' => 'common_descendant_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm1_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'cvterm2_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'ancestor_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'pathdistance1' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'pathdistance2' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'total_pathdistance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_contact_schema() * Purpose: To describe the structure of contact to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_contact_schema () { $description = array(); $description = array( 'table' => 'contact', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'contact_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), ), 'primary key' => array( '0' => 'contact_id', ), 'unique keys' => array( 'contact_c1' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_contact_relationship_schema() * Purpose: To describe the structure of contact_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_contact_relationship_schema () { $description = array(); $description = array( 'table' => 'contact_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'contact_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'contact_relationship_id', ), 'unique keys' => array( 'contact_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', ), ), 'indexes' => array( 'contact_relationship_idx1' => array( '0' => 'type_id', ), 'contact_relationship_idx2' => array( '0' => 'subject_id', ), 'contact_relationship_idx3' => array( '0' => 'object_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_control_schema() * Purpose: To describe the structure of control to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_control_schema () { $description = array(); $description = array( 'table' => 'control', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'control_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'tableinfo_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'row_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'control_id', ), 'unique keys' => array( ), 'indexes' => array( 'control_idx1' => array( '0' => 'type_id', ), 'control_idx2' => array( '0' => 'assay_id', ), 'control_idx3' => array( '0' => 'tableinfo_id', ), 'control_idx4' => array( '0' => 'row_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_biomaterialprop_schema() * Purpose: To describe the structure of biomaterialprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_biomaterialprop_schema () { $description = array(); $description = array( 'table' => 'biomaterialprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterialprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'biomaterial_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'biomaterialprop_id', ), 'unique keys' => array( 'biomaterialprop_c1' => array( '0' => 'biomaterial_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'biomaterialprop_idx1' => array( '0' => 'biomaterial_id', ), 'biomaterialprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_biomaterial_treatment_schema() * Purpose: To describe the structure of biomaterial_treatment to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_biomaterial_treatment_schema () { $description = array(); $description = array( 'table' => 'biomaterial_treatment', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_treatment_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'biomaterial_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'treatment_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'unittype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'biomaterial_treatment_id', ), 'unique keys' => array( 'biomaterial_treatment_c1' => array( '0' => 'biomaterial_id', '1' => 'treatment_id', ), ), 'indexes' => array( 'biomaterial_treatment_idx1' => array( '0' => 'biomaterial_id', ), 'biomaterial_treatment_idx2' => array( '0' => 'treatment_id', ), 'biomaterial_treatment_idx3' => array( '0' => 'unittype_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_acquisition_relationship_schema() * Purpose: To describe the structure of acquisition_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_acquisition_relationship_schema () { $description = array(); $description = array( 'table' => 'acquisition_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'acquisition_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'acquisition_relationship_id', ), 'unique keys' => array( 'acquisition_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', '3' => 'rank', ), ), 'indexes' => array( 'acquisition_relationship_idx1' => array( '0' => 'subject_id', ), 'acquisition_relationship_idx2' => array( '0' => 'type_id', ), 'acquisition_relationship_idx3' => array( '0' => 'object_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_acquisition_schema() * Purpose: To describe the structure of acquisition to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_acquisition_schema () { $description = array(); $description = array( 'table' => 'acquisition', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'acquisition_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'protocol_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'channel_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'acquisitiondate' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', 'default' => 'ow(', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'uri' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'acquisition_id', ), 'unique keys' => array( 'acquisition_c1' => array( '0' => 'name', ), ), 'indexes' => array( 'acquisition_idx1' => array( '0' => 'assay_id', ), 'acquisition_idx2' => array( '0' => 'protocol_id', ), 'acquisition_idx3' => array( '0' => 'channel_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_acquisitionprop_schema() * Purpose: To describe the structure of acquisitionprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_acquisitionprop_schema () { $description = array(); $description = array( 'table' => 'acquisitionprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'acquisitionprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'acquisition_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'acquisitionprop_id', ), 'unique keys' => array( 'acquisitionprop_c1' => array( '0' => 'acquisition_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'acquisitionprop_idx1' => array( '0' => 'acquisition_id', ), 'acquisitionprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_all_feature_names_schema() * Purpose: To describe the structure of all_feature_names to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_all_feature_names_schema () { $description = array(); $description = array( 'table' => 'all_feature_names', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_analysis_schema() * Purpose: To describe the structure of analysis to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_analysis_schema () { $description = array(); $description = array( 'table' => 'analysis', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysis_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'program' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'programversion' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'algorithm' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'sourcename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'sourceversion' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'sourceuri' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'timeexecuted' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '1', 'default' => 'ow(', ), ), 'primary key' => array( '0' => 'analysis_id', ), 'unique keys' => array( 'analysis_c1' => array( '0' => 'program', '1' => 'programversion', '2' => 'sourcename', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_analysisfeature_schema() * Purpose: To describe the structure of analysisfeature to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_analysisfeature_schema () { $description = array(); $description = array( 'table' => 'analysisfeature', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysisfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'analysis_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rawscore' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '', ), 'normscore' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '', ), 'significance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '', ), 'identity' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( '0' => 'analysisfeature_id', ), 'unique keys' => array( 'analysisfeature_c1' => array( '0' => 'feature_id', '1' => 'analysis_id', ), ), 'indexes' => array( 'analysisfeature_idx1' => array( '0' => 'feature_id', ), 'analysisfeature_idx2' => array( '0' => 'analysis_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_analysisfeatureprop_schema() * Purpose: To describe the structure of analysisfeatureprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_analysisfeatureprop_schema () { $description = array(); $description = array( 'table' => 'analysisfeatureprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysisfeatureprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'analysisfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'analysisfeatureprop_id', ), 'unique keys' => array( 'analysisfeature_id_type_id_rank' => array( '0' => 'analysisfeature_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_assayprop_schema() * Purpose: To describe the structure of assayprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_assayprop_schema () { $description = array(); $description = array( 'table' => 'assayprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'assayprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'assayprop_id', ), 'unique keys' => array( 'assayprop_c1' => array( '0' => 'assay_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'assayprop_idx1' => array( '0' => 'assay_id', ), 'assayprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_biomaterial_schema() * Purpose: To describe the structure of biomaterial to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_biomaterial_schema () { $description = array(); $description = array( 'table' => 'biomaterial', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'taxon_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'biosourceprovider_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'biomaterial_id', ), 'unique keys' => array( 'biomaterial_c1' => array( '0' => 'name', ), ), 'indexes' => array( 'biomaterial_idx1' => array( '0' => 'taxon_id', ), 'biomaterial_idx2' => array( '0' => 'biosourceprovider_id', ), 'biomaterial_idx3' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_biomaterial_dbxref_schema() * Purpose: To describe the structure of biomaterial_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_biomaterial_dbxref_schema () { $description = array(); $description = array( 'table' => 'biomaterial_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'biomaterial_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'biomaterial_dbxref_id', ), 'unique keys' => array( 'biomaterial_dbxref_c1' => array( '0' => 'biomaterial_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'biomaterial_dbxref_idx1' => array( '0' => 'biomaterial_id', ), 'biomaterial_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_biomaterial_relationship_schema() * Purpose: To describe the structure of biomaterial_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_biomaterial_relationship_schema () { $description = array(); $description = array( 'table' => 'biomaterial_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'biomaterial_relationship_id', ), 'unique keys' => array( 'biomaterial_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', ), ), 'indexes' => array( 'biomaterial_relationship_idx1' => array( '0' => 'subject_id', ), 'biomaterial_relationship_idx2' => array( '0' => 'object_id', ), 'biomaterial_relationship_idx3' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_assay_project_schema() * Purpose: To describe the structure of assay_project to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_assay_project_schema () { $description = array(); $description = array( 'table' => 'assay_project', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'assay_project_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'project_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'assay_project_id', ), 'unique keys' => array( 'assay_project_c1' => array( '0' => 'assay_id', '1' => 'project_id', ), ), 'indexes' => array( 'assay_project_idx1' => array( '0' => 'assay_id', ), 'assay_project_idx2' => array( '0' => 'project_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_assay_biomaterial_schema() * Purpose: To describe the structure of assay_biomaterial to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_assay_biomaterial_schema () { $description = array(); $description = array( 'table' => 'assay_biomaterial', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'assay_biomaterial_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'biomaterial_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'channel_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'assay_biomaterial_id', ), 'unique keys' => array( 'assay_biomaterial_c1' => array( '0' => 'assay_id', '1' => 'biomaterial_id', '2' => 'channel_id', '3' => 'rank', ), ), 'indexes' => array( 'assay_biomaterial_idx1' => array( '0' => 'assay_id', ), 'assay_biomaterial_idx2' => array( '0' => 'biomaterial_id', ), 'assay_biomaterial_idx3' => array( '0' => 'channel_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_analysisprop_schema() * Purpose: To describe the structure of analysisprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_analysisprop_schema () { $description = array(); $description = array( 'table' => 'analysisprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysisprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'analysis_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'analysisprop_id', ), 'unique keys' => array( 'analysisprop_c1' => array( '0' => 'analysis_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'analysisprop_idx1' => array( '0' => 'analysis_id', ), 'analysisprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_arraydesign_schema() * Purpose: To describe the structure of arraydesign to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_arraydesign_schema () { $description = array(); $description = array( 'table' => 'arraydesign', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'arraydesign_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'manufacturer_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'platformtype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'substratetype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'protocol_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'version' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'array_dimensions' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'element_dimensions' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'num_of_elements' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'num_array_columns' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'num_array_rows' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'num_grid_columns' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'num_grid_rows' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'num_sub_columns' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'num_sub_rows' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'arraydesign_id', ), 'unique keys' => array( 'arraydesign_c1' => array( '0' => 'name', ), ), 'indexes' => array( 'arraydesign_idx1' => array( '0' => 'manufacturer_id', ), 'arraydesign_idx2' => array( '0' => 'platformtype_id', ), 'arraydesign_idx3' => array( '0' => 'substratetype_id', ), 'arraydesign_idx4' => array( '0' => 'protocol_id', ), 'arraydesign_idx5' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_arraydesignprop_schema() * Purpose: To describe the structure of arraydesignprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_arraydesignprop_schema () { $description = array(); $description = array( 'table' => 'arraydesignprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'arraydesignprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'arraydesign_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'arraydesignprop_id', ), 'unique keys' => array( 'arraydesignprop_c1' => array( '0' => 'arraydesign_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'arraydesignprop_idx1' => array( '0' => 'arraydesign_id', ), 'arraydesignprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_assay_schema() * Purpose: To describe the structure of assay to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_assay_schema () { $description = array(); $description = array( 'table' => 'assay', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'assay_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'arraydesign_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'protocol_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'assaydate' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', 'default' => 'ow(', ), 'arrayidentifier' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'arraybatchidentifier' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'operator_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'assay_id', ), 'unique keys' => array( 'assay_c1' => array( '0' => 'name', ), ), 'indexes' => array( 'assay_idx1' => array( '0' => 'arraydesign_id', ), 'assay_idx2' => array( '0' => 'protocol_id', ), 'assay_idx3' => array( '0' => 'operator_id', ), 'assay_idx4' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cv_root_schema() * Purpose: To describe the structure of cv_root to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cv_root_schema () { $description = array(); $description = array( 'table' => 'cv_root', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cv_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'root_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cvterm_schema() * Purpose: To describe the structure of cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cvterm_schema () { $description = array(); $description = array( 'table' => 'cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cv_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '1', ), 'definition' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_obsolete' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), 'is_relationshiptype' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'cvterm_id', ), 'unique keys' => array( 'cvterm_c1' => array( '0' => 'name', '1' => 'cv_id', '2' => 'is_obsolete', ), 'cvterm_c2' => array( '0' => 'dbxref_id', ), ), 'indexes' => array( 'cvterm_idx1' => array( '0' => 'cv_id', ), 'cvterm_idx2' => array( '0' => 'name', ), 'cvterm_idx3' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_dbxref_schema() * Purpose: To describe the structure of feature_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_dbxref_schema () { $description = array(); $description = array( 'table' => 'feature_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_current' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'ru', ), ), 'primary key' => array( '0' => 'feature_dbxref_id', ), 'unique keys' => array( 'feature_dbxref_c1' => array( '0' => 'feature_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'feature_dbxref_idx1' => array( '0' => 'feature_id', ), 'feature_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_cvtermprop_schema() * Purpose: To describe the structure of feature_cvtermprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_cvtermprop_schema () { $description = array(); $description = array( 'table' => 'feature_cvtermprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvtermprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'feature_cvtermprop_id', ), 'unique keys' => array( 'feature_cvtermprop_c1' => array( '0' => 'feature_cvterm_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'feature_cvtermprop_idx1' => array( '0' => 'feature_cvterm_id', ), 'feature_cvtermprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_difference_schema() * Purpose: To describe the structure of feature_difference to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_difference_schema () { $description = array(); $description = array( 'table' => 'feature_difference', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'fmin' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmax' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_disjoint_schema() * Purpose: To describe the structure of feature_disjoint to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_disjoint_schema () { $description = array(); $description = array( 'table' => 'feature_disjoint', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_distance_schema() * Purpose: To describe the structure of feature_distance to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_distance_schema () { $description = array(); $description = array( 'table' => 'feature_distance', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'subject_strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'object_strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'distance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_cvterm_pub_schema() * Purpose: To describe the structure of feature_cvterm_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_cvterm_pub_schema () { $description = array(); $description = array( 'table' => 'feature_cvterm_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvterm_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_cvterm_pub_id', ), 'unique keys' => array( 'feature_cvterm_pub_c1' => array( '0' => 'feature_cvterm_id', '1' => 'pub_id', ), ), 'indexes' => array( 'feature_cvterm_pub_idx1' => array( '0' => 'feature_cvterm_id', ), 'feature_cvterm_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_cvterm_dbxref_schema() * Purpose: To describe the structure of feature_cvterm_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_cvterm_dbxref_schema () { $description = array(); $description = array( 'table' => 'feature_cvterm_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvterm_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_cvterm_dbxref_id', ), 'unique keys' => array( 'feature_cvterm_dbxref_c1' => array( '0' => 'feature_cvterm_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'feature_cvterm_dbxref_idx1' => array( '0' => 'feature_cvterm_id', ), 'feature_cvterm_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_f_type_schema() * Purpose: To describe the structure of f_type to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_f_type_schema () { $description = array(); $description = array( 'table' => 'f_type', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '', ), 'residues' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'seqlen' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'md5checksum' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'char', 'length' => '32', 'not null' => '', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'timeaccessioned' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', ), 'timelastmodified' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_schema() * Purpose: To describe the structure of feature to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_schema () { $description = array(); $description = array( 'table' => 'feature', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'organism_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'residues' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'seqlen' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'md5checksum' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'char', 'length' => '32', 'not null' => '', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_analysis' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), 'is_obsolete' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), 'timeaccessioned' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '1', 'default' => 'ow(', ), 'timelastmodified' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => '1', 'default' => 'ow(', ), ), 'primary key' => array( '0' => 'feature_id', ), 'unique keys' => array( 'feature_c1' => array( '0' => 'organism_id', '1' => 'uniquename', '2' => 'type_id', ), ), 'indexes' => array( 'feature_idx1' => array( '0' => 'dbxref_id', ), 'feature_idx2' => array( '0' => 'organism_id', ), 'feature_idx3' => array( '0' => 'type_id', ), 'feature_idx4' => array( '0' => 'uniquename', ), 'feature_name_ind1' => array( '0' => 'name', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_contains_schema() * Purpose: To describe the structure of feature_contains to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_contains_schema () { $description = array(); $description = array( 'table' => 'feature_contains', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_cvterm_schema() * Purpose: To describe the structure of feature_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_cvterm_schema () { $description = array(); $description = array( 'table' => 'feature_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_not' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '1', 'default' => 'als', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'feature_cvterm_id', ), 'unique keys' => array( 'feature_cvterm_c1' => array( '0' => 'feature_id', '1' => 'cvterm_id', '2' => 'pub_id', '3' => 'rank', ), ), 'indexes' => array( 'feature_cvterm_idx1' => array( '0' => 'feature_id', ), 'feature_cvterm_idx2' => array( '0' => 'cvterm_id', ), 'feature_cvterm_idx3' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_expression_schema() * Purpose: To describe the structure of feature_expression to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_expression_schema () { $description = array(); $description = array( 'table' => 'feature_expression', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_expression_id', ), 'unique keys' => array( 'feature_expression_c1' => array( '0' => 'expression_id', '1' => 'feature_id', '2' => 'pub_id', ), ), 'indexes' => array( 'feature_expression_idx1' => array( '0' => 'expression_id', ), 'feature_expression_idx2' => array( '0' => 'feature_id', ), 'feature_expression_idx3' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_expressionprop_schema() * Purpose: To describe the structure of feature_expressionprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_expressionprop_schema () { $description = array(); $description = array( 'table' => 'feature_expressionprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_expressionprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'feature_expressionprop_id', ), 'unique keys' => array( 'feature_expressionprop_c1' => array( '0' => 'feature_expression_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'feature_expressionprop_idx1' => array( '0' => 'feature_expression_id', ), 'feature_expressionprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_pubprop_schema() * Purpose: To describe the structure of feature_pubprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_pubprop_schema () { $description = array(); $description = array( 'table' => 'feature_pubprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_pubprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'feature_pubprop_id', ), 'unique keys' => array( 'feature_pubprop_c1' => array( '0' => 'feature_pub_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'feature_pubprop_idx1' => array( '0' => 'feature_pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_relationship_schema() * Purpose: To describe the structure of feature_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_relationship_schema () { $description = array(); $description = array( 'table' => 'feature_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'feature_relationship_id', ), 'unique keys' => array( 'feature_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', '3' => 'rank', ), ), 'indexes' => array( 'feature_relationship_idx1' => array( '0' => 'subject_id', ), 'feature_relationship_idx2' => array( '0' => 'object_id', ), 'feature_relationship_idx3' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_relationship_pub_schema() * Purpose: To describe the structure of feature_relationship_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_relationship_pub_schema () { $description = array(); $description = array( 'table' => 'feature_relationship_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationship_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_relationship_pub_id', ), 'unique keys' => array( 'feature_relationship_pub_c1' => array( '0' => 'feature_relationship_id', '1' => 'pub_id', ), ), 'indexes' => array( 'feature_relationship_pub_idx1' => array( '0' => 'feature_relationship_id', ), 'feature_relationship_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_relationshipprop_schema() * Purpose: To describe the structure of feature_relationshipprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_relationshipprop_schema () { $description = array(); $description = array( 'table' => 'feature_relationshipprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationshipprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'feature_relationshipprop_id', ), 'unique keys' => array( 'feature_relationshipprop_c1' => array( '0' => 'feature_relationship_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'feature_relationshipprop_idx1' => array( '0' => 'feature_relationship_id', ), 'feature_relationshipprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_pub_schema() * Purpose: To describe the structure of feature_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_pub_schema () { $description = array(); $description = array( 'table' => 'feature_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_pub_id', ), 'unique keys' => array( 'feature_pub_c1' => array( '0' => 'feature_id', '1' => 'pub_id', ), ), 'indexes' => array( 'feature_pub_idx1' => array( '0' => 'feature_id', ), 'feature_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_phenotype_schema() * Purpose: To describe the structure of feature_phenotype to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_phenotype_schema () { $description = array(); $description = array( 'table' => 'feature_phenotype', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_phenotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'phenotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_phenotype_id', ), 'unique keys' => array( 'feature_phenotype_c1' => array( '0' => 'feature_id', '1' => 'phenotype_id', ), ), 'indexes' => array( 'feature_phenotype_idx1' => array( '0' => 'feature_id', ), 'feature_phenotype_idx2' => array( '0' => 'phenotype_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_genotype_schema() * Purpose: To describe the structure of feature_genotype to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_genotype_schema () { $description = array(); $description = array( 'table' => 'feature_genotype', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_genotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'genotype_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'chromosome_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cgroup' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'feature_genotype_id', ), 'unique keys' => array( 'feature_genotype_c1' => array( '0' => 'feature_id', '1' => 'genotype_id', '2' => 'cvterm_id', '3' => 'chromosome_id', '4' => 'rank', '5' => 'cgroup', ), ), 'indexes' => array( 'feature_genotype_idx1' => array( '0' => 'feature_id', ), 'feature_genotype_idx2' => array( '0' => 'genotype_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_intersection_schema() * Purpose: To describe the structure of feature_intersection to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_intersection_schema () { $description = array(); $description = array( 'table' => 'feature_intersection', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'subject_strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'object_strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'fmin' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'fmax' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_meets_schema() * Purpose: To describe the structure of feature_meets to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_meets_schema () { $description = array(); $description = array( 'table' => 'feature_meets', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_feature_meets_on_same_strand_schema() * Purpose: To describe the structure of feature_meets_on_same_strand to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_feature_meets_on_same_strand_schema () { $description = array(); $description = array( 'table' => 'feature_meets_on_same_strand', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_f_loc_schema() * Purpose: To describe the structure of f_loc to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_f_loc_schema () { $description = array(); $description = array( 'table' => 'f_loc', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'nbeg' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'nend' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_expressionprop_schema() * Purpose: To describe the structure of expressionprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_expressionprop_schema () { $description = array(); $description = array( 'table' => 'expressionprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'expressionprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'expressionprop_id', ), 'unique keys' => array( 'expressionprop_c1' => array( '0' => 'expression_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'expressionprop_idx1' => array( '0' => 'expression_id', ), 'expressionprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_db_dbxref_count_schema() * Purpose: To describe the structure of db_dbxref_count to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_db_dbxref_count_schema () { $description = array(); $description = array( 'table' => 'db_dbxref_count', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'num_dbxrefs' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'big', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_dbxref_schema() * Purpose: To describe the structure of dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_dbxref_schema () { $description = array(); $description = array( 'table' => 'dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'db_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'accession' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'version' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', 'default' => '', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'dbxref_id', ), 'unique keys' => array( 'dbxref_c1' => array( '0' => 'db_id', '1' => 'accession', '2' => 'version', ), ), 'indexes' => array( 'dbxref_idx1' => array( '0' => 'db_id', ), 'dbxref_idx2' => array( '0' => 'accession', ), 'dbxref_idx3' => array( '0' => 'version', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_dbxrefprop_schema() * Purpose: To describe the structure of dbxrefprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_dbxrefprop_schema () { $description = array(); $description = array( 'table' => 'dbxrefprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'dbxrefprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', 'default' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'dbxrefprop_id', ), 'unique keys' => array( 'dbxrefprop_c1' => array( '0' => 'dbxref_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'dbxrefprop_idx1' => array( '0' => 'dbxref_id', ), 'dbxrefprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_dfeatureloc_schema() * Purpose: To describe the structure of dfeatureloc to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_dfeatureloc_schema () { $description = array(); $description = array( 'table' => 'dfeatureloc', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureloc_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'srcfeature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'nbeg' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'is_nbeg_partial' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '', ), 'nend' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'is_nend_partial' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => '', ), 'strand' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => '', ), 'phase' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'residue_info' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'locgroup' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_db_schema() * Purpose: To describe the structure of db to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_db_schema () { $description = array(); $description = array( 'table' => 'db', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'db_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'name' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'urlprefix' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), 'url' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), ), 'primary key' => array( '0' => 'db_id', ), 'unique keys' => array( 'db_c1' => array( '0' => 'name', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cvtermsynonym_schema() * Purpose: To describe the structure of cvtermsynonym to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cvtermsynonym_schema () { $description = array(); $description = array( 'table' => 'cvtermsynonym', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvtermsynonym_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'synonym' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'cvtermsynonym_id', ), 'unique keys' => array( 'cvtermsynonym_c1' => array( '0' => 'cvterm_id', '1' => 'synonym', ), ), 'indexes' => array( 'cvtermsynonym_idx1' => array( '0' => 'cvterm_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cvterm_dbxref_schema() * Purpose: To describe the structure of cvterm_dbxref to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cvterm_dbxref_schema () { $description = array(); $description = array( 'table' => 'cvterm_dbxref', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm_dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'is_for_definition' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'cvterm_dbxref_id', ), 'unique keys' => array( 'cvterm_dbxref_c1' => array( '0' => 'cvterm_id', '1' => 'dbxref_id', ), ), 'indexes' => array( 'cvterm_dbxref_idx1' => array( '0' => 'cvterm_id', ), 'cvterm_dbxref_idx2' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cvterm_relationship_schema() * Purpose: To describe the structure of cvterm_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cvterm_relationship_schema () { $description = array(); $description = array( 'table' => 'cvterm_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'cvterm_relationship_id', ), 'unique keys' => array( 'cvterm_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', ), ), 'indexes' => array( 'cvterm_relationship_idx1' => array( '0' => 'type_id', ), 'cvterm_relationship_idx2' => array( '0' => 'subject_id', ), 'cvterm_relationship_idx3' => array( '0' => 'object_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cvtermpath_schema() * Purpose: To describe the structure of cvtermpath to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cvtermpath_schema () { $description = array(); $description = array( 'table' => 'cvtermpath', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvtermpath_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cv_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pathdistance' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'cvtermpath_id', ), 'unique keys' => array( 'cvtermpath_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', '3' => 'pathdistance', ), ), 'indexes' => array( 'cvtermpath_idx1' => array( '0' => 'type_id', ), 'cvtermpath_idx2' => array( '0' => 'subject_id', ), 'cvtermpath_idx3' => array( '0' => 'object_id', ), 'cvtermpath_idx4' => array( '0' => 'cv_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_cvtermprop_schema() * Purpose: To describe the structure of cvtermprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_cvtermprop_schema () { $description = array(); $description = array( 'table' => 'cvtermprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvtermprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', 'default' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'cvtermprop_id', ), 'unique keys' => array( 'cvterm_id' => array( '0' => 'cvterm_id', '1' => 'type_id', '2' => 'value', '3' => 'rank', ), ), 'indexes' => array( 'cvtermprop_idx1' => array( '0' => 'cvterm_id', ), 'cvtermprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_eimage_schema() * Purpose: To describe the structure of eimage to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_eimage_schema () { $description = array(); $description = array( 'table' => 'eimage', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'eimage_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'eimage_data' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'eimage_type' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '1', ), 'image_uri' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => '', ), ), 'primary key' => array( '0' => 'eimage_id', ), 'unique keys' => array( ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_element_schema() * Purpose: To describe the structure of element to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_element_schema () { $description = array(); $description = array( 'table' => 'element', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'element_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'feature_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'arraydesign_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), 'dbxref_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '', ), ), 'primary key' => array( '0' => 'element_id', ), 'unique keys' => array( 'element_c1' => array( '0' => 'feature_id', '1' => 'arraydesign_id', ), ), 'indexes' => array( 'element_idx1' => array( '0' => 'feature_id', ), 'element_idx2' => array( '0' => 'arraydesign_id', ), 'element_idx3' => array( '0' => 'type_id', ), 'element_idx4' => array( '0' => 'dbxref_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_expression_cvterm_schema() * Purpose: To describe the structure of expression_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_expression_cvterm_schema () { $description = array(); $description = array( 'table' => 'expression_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), 'cvterm_type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'expression_cvterm_id', ), 'unique keys' => array( 'expression_cvterm_c1' => array( '0' => 'expression_id', '1' => 'cvterm_id', '2' => 'cvterm_type_id', ), ), 'indexes' => array( 'expression_cvterm_idx1' => array( '0' => 'expression_id', ), 'expression_cvterm_idx2' => array( '0' => 'cvterm_id', ), 'expression_cvterm_idx3' => array( '0' => 'cvterm_type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_expression_cvtermprop_schema() * Purpose: To describe the structure of expression_cvtermprop to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_expression_cvtermprop_schema () { $description = array(); $description = array( 'table' => 'expression_cvtermprop', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_cvtermprop_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'expression_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'expression_cvtermprop_id', ), 'unique keys' => array( 'expression_cvtermprop_c1' => array( '0' => 'expression_cvterm_id', '1' => 'type_id', '2' => 'rank', ), ), 'indexes' => array( 'expression_cvtermprop_idx1' => array( '0' => 'expression_cvterm_id', ), 'expression_cvtermprop_idx2' => array( '0' => 'type_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_expression_image_schema() * Purpose: To describe the structure of expression_image to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_expression_image_schema () { $description = array(); $description = array( 'table' => 'expression_image', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_image_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'eimage_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'expression_image_id', ), 'unique keys' => array( 'expression_image_c1' => array( '0' => 'expression_id', '1' => 'eimage_id', ), ), 'indexes' => array( 'expression_image_idx1' => array( '0' => 'expression_id', ), 'expression_image_idx2' => array( '0' => 'eimage_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_expression_pub_schema() * Purpose: To describe the structure of expression_pub to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_expression_pub_schema () { $description = array(); $description = array( 'table' => 'expression_pub', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'pub_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'expression_pub_id', ), 'unique keys' => array( 'expression_pub_c1' => array( '0' => 'expression_id', '1' => 'pub_id', ), ), 'indexes' => array( 'expression_pub_idx1' => array( '0' => 'expression_id', ), 'expression_pub_idx2' => array( '0' => 'pub_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_expression_schema() * Purpose: To describe the structure of expression to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_expression_schema () { $description = array(); $description = array( 'table' => 'expression', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'md5checksum' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'char', 'length' => '32', 'not null' => '', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'expression_id', ), 'unique keys' => array( 'expression_c1' => array( '0' => 'uniquename', ), ), 'indexes' => array( ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_environment_cvterm_schema() * Purpose: To describe the structure of environment_cvterm to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_environment_cvterm_schema () { $description = array(); $description = array( 'table' => 'environment_cvterm', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'environment_cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'environment_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'cvterm_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), ), 'primary key' => array( '0' => 'environment_cvterm_id', ), 'unique keys' => array( 'environment_cvterm_c1' => array( '0' => 'environment_id', '1' => 'cvterm_id', ), ), 'indexes' => array( 'environment_cvterm_idx1' => array( '0' => 'environment_id', ), 'environment_cvterm_idx2' => array( '0' => 'cvterm_id', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_element_relationship_schema() * Purpose: To describe the structure of element_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_element_relationship_schema () { $description = array(); $description = array( 'table' => 'element_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'element_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'element_relationship_id', ), 'unique keys' => array( 'element_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', '3' => 'rank', ), ), 'indexes' => array( 'element_relationship_idx1' => array( '0' => 'subject_id', ), 'element_relationship_idx2' => array( '0' => 'type_id', ), 'element_relationship_idx3' => array( '0' => 'object_id', ), 'element_relationship_idx4' => array( '0' => 'value', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_elementresult_schema() * Purpose: To describe the structure of elementresult to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_elementresult_schema () { $description = array(); $description = array( 'table' => 'elementresult', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'elementresult_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'element_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'quantification_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'signal' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => '1', ), ), 'primary key' => array( '0' => 'elementresult_id', ), 'unique keys' => array( 'elementresult_c1' => array( '0' => 'element_id', '1' => 'quantification_id', ), ), 'indexes' => array( 'elementresult_idx1' => array( '0' => 'element_id', ), 'elementresult_idx2' => array( '0' => 'quantification_id', ), 'elementresult_idx3' => array( '0' => 'signal', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_elementresult_relationship_schema() * Purpose: To describe the structure of elementresult_relationship to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_elementresult_relationship_schema () { $description = array(); $description = array( 'table' => 'elementresult_relationship', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'elementresult_relationship_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'subject_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'type_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'object_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', ), 'value' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), 'rank' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => '1', 'default' => '0', ), ), 'primary key' => array( '0' => 'elementresult_relationship_id', ), 'unique keys' => array( 'elementresult_relationship_c1' => array( '0' => 'subject_id', '1' => 'object_id', '2' => 'type_id', '3' => 'rank', ), ), 'indexes' => array( 'elementresult_relationship_idx1' => array( '0' => 'subject_id', ), 'elementresult_relationship_idx2' => array( '0' => 'type_id', ), 'elementresult_relationship_idx3' => array( '0' => 'object_id', ), 'elementresult_relationship_idx4' => array( '0' => 'value', ), ), 'foreign keys' => array( ), ); return $description; } /** * Implements hook_environment_schema() * Purpose: To describe the structure of environment to tripal * @see tripal_core.api.inc: tripal_core_chado_insert() * @see tripal_core.api.inc: tripal_core_chado_update() * @see tripal_core.api.inc: tripal_core_chado_select() * * @return * An array describing the current table * * @ingroup tripal_schema_api * */ function tripal_core_chado_environment_schema () { $description = array(); $description = array( 'table' => 'environment', // 'description' => 'TODO: please describe this table!', 'fields' => array( 'environment_id' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => '1', ), 'uniquename' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '1', ), 'description' => array( // 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => '', ), ), 'primary key' => array( '0' => 'environment_id', ), 'unique keys' => array( 'environment_c1' => array( '0' => 'uniquename', ), ), 'indexes' => array( 'environment_idx1' => array( '0' => 'uniquename', ), ), 'foreign keys' => array( ), ); return $description; }