'schema', // The name of the term. 'term_name' => 'alternateName', // The unique ID (i.e. accession) of the term. 'term_accession' => 'alternateName', // Set to TRUE if the site admin is allowed to change the term // type. This will create form elements when editing the field instance // to allow the site admin to change the term settings above. 'term_fixed' => TRUE, ); // The default widget for this field. public static $default_widget = 'schema__alternate_name_widget'; // The default formatter for this field. public static $default_formatter = 'schema__alternate_name_formatter'; // -------------------------------------------------------------------------- // PROTECTED CLASS MEMBERS -- DO NOT OVERRIDE // -------------------------------------------------------------------------- // An array containing details about the field. The format of this array // is the same as that returned by field_info_fields() protected $field; // An array containing details about an instance of the field. A field does // not have to have an instance. But if dealing with an instance (such as // when using the widgetForm, formatterSettingsForm, etc.) it should be set. protected $instance; /** * * @see TripalField::load() */ public function load($entity, $details = array()) { $record = $details['record']; $base_table = $this->instance['settings']['base_table']; $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->instance['settings']['chado_table']; $field_column = $this->instance['settings']['chado_column']; // Get the PKey for this table $schema = chado_get_schema($field_table); $pkey = $schema['primary key'][0]; // Get the FK that links to the base record. $schema = chado_get_schema($field_table); $fkey_lcolumn = key($schema['foreign keys'][$base_table]['columns']); $fkey_rcolumn = $schema['foreign keys'][$base_table]['columns'][$fkey_lcolumn]; // Set some defaults for the empty record. $entity->{$field_name}['und'][0] = array( 'value' => array(), 'chado-' . $field_table . '__' . $pkey => '', 'chado-' . $field_table . '__' . $fkey_lcolumn => '', 'chado-' . $field_table . '__' . 'synonym_id' => '', 'chado-' . $field_table . '__' . 'pub_id' => '', 'chado-' . $field_table . '__' . 'is_current' => TRUE, 'chado-' . $field_table . '__' . 'is_internal' => '', 'name' => '', 'type_id' => '', // Ignore the synonym_sgml column for now. ); $linker_table = $base_table . '_synonym'; $options = array('return_array' => 1); $record = chado_expand_var($record, 'table', $linker_table, $options); if (count($record->$linker_table) > 0) { $i = 0; foreach ($record->$linker_table as $index => $linker) { $synonym = $linker->synonym_id; $entity->{$field_name}['und'][$i] = array( 'value' => array( '@type' => $synonym->type_id->dbxref_id->db_id->name . ':' . $synonym->type_id->dbxref_id->accession, 'type' => $synonym->type_id->name, 'name' => $synonym->name, ), 'chado-' . $field_table . '__' . $pkey => $linker->$pkey, 'chado-' . $field_table . '__' . $fkey_lcolumn => $linker->$fkey_lcolumn->$fkey_lcolumn, 'chado-' . $field_table . '__' . 'synonym_id' => $synonym->synonym_id, 'chado-' . $field_table . '__' . 'pub_id' => $linker->pub_id->pub_id, 'chado-' . $field_table . '__' . 'is_current' => $linker->is_current, 'chado-' . $field_table . '__' . 'is_internal' => $linker->is_internal, 'name' => $synonym->name, 'type_id' => $synonym->type_id->cvterm_id, ); $i++; } } } }