Analysis/Annotation
===================

Tripal Analysis Expression
--------------------------

A module for loading, annotating, and visualizing NCBI Biosamples and expression data.

`Documentation <https://github.com/tripal/tripal_analysis_expression/blob/master/README.md>`__
`Repository <https://github.com/tripal/tripal_analysis_expression>`__

Tripal Analysis Blast
---------------------

This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.

`Documentation <https://tripal.readthedocs.io/en/latest/user_guide/example_genomics/func_annots/blast.html>`__
`Repository <https://github.com/tripal/tripal_analysis_blast>`__

Tripal Analysis KEGG
--------------------

This module provides a method for loading of KEGG ortholog assignments derived from the KEGG Automated Annotation Server (KAAS). KEGG assignments appear on each feature page, and a full KEGG report is available for browsing results once uploaded.

`Repository <https://github.com/tripal/tripal_analysis_kegg>`__

Tripal Analysis Interpro
------------------------

This module provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.

`Documentation <https://tripal.readthedocs.io/en/latest/user_guide/example_genomics/func_annots/interpro.html>`__
`Repository <https://github.com/tripal/tripal_analysis_interpro>`__

Tripal JBrowse
--------------

This module provides integration between Tripal sites and pre-existing GMOD JBrowse instances. It allows you to create pages on your Tripal site with an embedded JBrowse instance by filling out a simple form.

`Documentation <https://github.com/tripal/tripal_jbrowse/blob/7.x-2.1.x/README.md>`__
`Repository <https://github.com/tripal/tripal_jbrowse>`__

Tripal CV-Xray
--------------

Tripal CV-Xray maps content annotations onto controlled vocabulary trees.  The end result is a browseable CV field that lets users explore ontologies and find associated content.

`Documentation <https://github.com/statonlab/tripal_cv_xray/blob/master/README.md>`__
`Repository <https://github.com/statonlab/tripal_cv_xray>`__

Tripal Galaxy
-------------

This module is for integration of Tripal and the Galaxy Project. It facillitates the creation of forms on your Tripal site that submit jobs to a galaxy instance.

`Documentation <https://github.com/tripal/tripal_galaxy/blob/7.x-1.x/README.md>`__
`Repository <https://github.com/tripal/tripal_galaxy>`__