field['field_name']; $field_type = $this->field['type']; $field_table = $this->field['settings']['chado_table']; $field_column = $this->field['settings']['chado_column']; // Get the field defaults. $fk_val = ''; $db_id = ''; $accession = ''; $version = ''; $description = ''; // If the field already has a value then it will come through the $items // array. This happens when editing an existing record. if (count($items) > 0 and array_key_exists($delta, $items)) { $fk_val = $items[$delta]['chado-' . $field_table . '__' . $field_column]; $db_id = $items[$delta]['db_id']; $accession = $items[$delta]['accession']; $version = $items[$delta]['version']; $description = $items[$delta]['description']; } // Check $form_state['values'] to see if an AJAX call set the values. if (array_key_exists('values', $form_state)) { $fk_val = isset($form_state['values'][$field_name]['und'][$delta]['chado-' . $field_table . '__' . $field_column]) ? $form_state['values'][$field_name]['und'][$delta]['chado-' . $field_table . '__' . $field_column] : ''; $db_id = isset($form_state['values'][$field_name]['und'][$delta]['db_id']) ? $form_state['values'][$field_name]['und'][$delta]['db_id'] : ''; $accession = isset($form_state['values'][$field_name]['und'][$delta]['accession']) ? $form_state['values'][$field_name]['und'][$delta]['accession'] : ''; $version = isset($form_state['values'][$field_name]['und'][$delta]['version']) ? $form_state['values'][$field_name]['und'][$delta]['version'] : ''; $description = isset($form_state['values'][$field_name]['und'][$delta]['description']) ? $form_state['values'][$field_name]['und'][$delta]['description'] : ''; } $schema = chado_get_schema('dbxref'); $options = tripal_get_db_select_options(); //$widget['#element_validate'] = array('chado_base__dbxref_id_widget_validate'); $widget['#theme'] = 'data__accession_widget'; $widget['#prefix'] = ""; $widget['#suffix'] = ""; // A temporary element used for theming the fieldset. $widget['#theme_settings'] = array( '#title' => $element['#title'], '#description' => $element['#description'], '#weight' => isset($element['#weight']) ? $element['#weight'] : 0, '#theme' => 'data__accession_widget', //'#collapsible' => TRUE, //'#collapsed' => $collapsed, ); $widget['value'] = array( '#type' => 'value', '#value' => array_key_exists($delta, $items) ? $items[$delta]['value'] : '', ); $widget['chado-' . $field_table . '__' . $field_column] = array( '#type' => 'value', '#default_value' => $fk_val, ); $widget['db_id'] = array( '#type' => 'select', '#title' => t('Database'), '#options' => $options, '#required' => $element['#required'], '#default_value' => $db_id, '#ajax' => array( 'callback' => "data__accession_widget_form_ajax_callback", 'wrapper' => "$field_name-dbxref--db-id", 'effect' => 'fade', 'method' => 'replace' ), ); $widget['accession'] = array( '#type' => 'textfield', '#title' => t('Accession'), '#default_value' => $accession, '#required' => $element['#required'], '#maxlength' => array_key_exists('length', $schema['fields']['accession']) ? $schema['fields']['accession']['length'] : 255, '#size' => 15, '#autocomplete_path' => 'admin/tripal/storage/chado/auto_name/dbxref/' . $db_id, '#ajax' => array( 'callback' => "tripal_chado_dbxref_widget_form_ajax_callback", 'wrapper' => "$field_name-dbxref--db-id", 'effect' => 'fade', 'method' => 'replace' ), '#disabled' => $db_id ? FALSE : TRUE, ); $widget['version'] = array( '#type' => 'textfield', '#title' => t('Version'), '#default_value' => $version, '#maxlength' => array_key_exists('length', $schema['fields']['version']) ? $schema['fields']['version']['length'] : 255, '#size' => 5, '#disabled' => $db_id ? FALSE : TRUE, ); $widget['description'] = array( '#type' => 'textfield', '#title' => t('Description'), '#default_value' => $description, '#size' => 20, '#disabled' => $db_id ? FALSE : TRUE, ); $widget['links'] = array( '#type' => 'item', '#markup' => l('Add a new database', 'admin/tripal/legacy/tripal_db/add', array('attributes' => array('target' => '_blank'))) ); } /** * @see TripalFieldWidget::submit() */ public function submit($form, &$form_state, $entity_type, $entity, $langcode, $delta) { $field_name = $this->field['field_name']; $settings = $this->field['settings']; $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->field['settings']['chado_table']; $field_column = $this->field['settings']['chado_column']; $fk_val = isset($form_state['values'][$field_name][$langcode][$delta]['chado-' . $field_table . '__' . $field_column]) ? $form_state['values'][$field_name][$langcode][$delta]['chado-' . $field_table . '__' . $field_column] : ''; $db_id = isset($form_state['values'][$field_name][$langcode][$delta]['db_id']) ? $form_state['values'][$field_name][$langcode][$delta]['db_id'] : ''; $accession = isset($form_state['values'][$field_name][$langcode][$delta]['accession']) ? $form_state['values'][$field_name][$langcode][$delta]['accession'] : ''; $version = isset($form_state['values'][$field_name][$langcode][$delta]['version']) ? $form_state['values'][$field_name][$langcode][$delta]['version'] : ''; // If user did not select a database, we want to remove dbxref_id from the // field. if (!$db_id) { $form_state['values'][$field_name][$langcode][$delta]['chado-' . $field_table . '__dbxref_id'] = '__NULL__'; } // If the dbxref_id does not match the db_id + accession then the user // has selected a new dbxref record and we need to update the hidden // value accordingly. if ($db_id and $accession) { $dbxref = chado_generate_var('dbxref', array('db_id' => $db_id, 'accession' => $accession)); if ($dbxref and $dbxref->dbxref_id != $fk_val) { $form_state['values'][$field_name][$langcode][$delta]['chado-' . $field_table . '__dbxref_id'] = $dbxref->dbxref_id; } } } } /** * An Ajax callback for the tripal_chado_admin_publish_form.. */ function data__accession_widget_form_ajax_callback($form, $form_state) { $field_name = $form_state['triggering_element']['#parents'][0]; $field = field_info_field($field_name); $field_type = $field['type']; $field_table = $field['settings']['chado_table']; $field_column = $field['settings']['chado_column']; $field_prefix = 'chado-' . $field_table . '__' . $field_column; // $db_id = tripal_chado_get_field_form_values($field_name, $form_state, 0, $field_prefix . '--db_id'); // $accession = tripal_chado_get_field_form_values($field_name, $form_state, 0, $field_prefix . '--accession'); if ($db_id and $accession) { $values = array( 'db_id' => $db_id, 'accession' => $accession, ); $options = array('is_duplicate' => TRUE); $has_duplicate = chado_select_record('dbxref', array('*'), $values, $options); if (!$has_duplicate) { drupal_set_message('The selected cross reference is new and will be added for future auto completions.', 'warning'); } } return $form[$field_name]; } function theme_data__accession_widget($variables) { $element = $variables['element']; $field_name = $element['#field_name']; $field = field_info_field($field_name); $field_type = $field['type']; $field_table = $field['settings']['chado_table']; $field_column = $field['settings']['chado_column']; $field_prefix = 'chado-' . $field_table . '__' . $field_column; $layout = "
"; // $classes = array(); // $classes[] = 'collapsible'; // $theme_settings = $element['#theme_settings']; // if ($theme_settings['#collapsed'] == FALSE) { // $classes[] = 'collapsed'; // } $fieldset = array( '#title' => $element['#title'], '#value' => '', '#description' => $element['#description'], '#children' => $layout, // '#attributes' => array('class' => $classes), ); return theme('fieldset', array('element' => $fieldset)); }