'', 'chado_column' => '', 'base_table' => '', ); // Provide a list of instance specific settings. These can be access within // the instanceSettingsForm. When the instanceSettingsForm is submitted // then Drupal with automatically change these settings for the instnace. // It is recommended to put settings at the instance level whenever possible. public static $instance_settings = array(); // Set this to the name of the storage backend that by default will support // this field. public static $storage = 'tripal_no_storage'; // The default widget for this field. public static $default_widget = 'schema__publication_widget'; // The default formatter for this field. public static $default_formatter = 'schema__publication_formatter'; // -------------------------------------------------------------------------- // PROTECTED CLASS MEMBERS -- DO NOT OVERRIDE // -------------------------------------------------------------------------- // An array containing details about the field. The format of this array // is the same as that returned by field_info_fields() protected $field; // An array containing details about an instance of the field. A field does // not have to have an instance. But if dealing with an instance (such as // when using the widgetForm, formatterSettingsForm, etc.) it should be set. protected $instance; /** * * @see TripalField::validate() */ public function validate($entity_type, $entity, $field, $items, &$errors) { } /** * * @see TripalField::load() */ public function load($entity, $details = array()) { $record = $details['record']; $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->field['settings']['chado_table']; $field_column = $this->field['settings']['chado_column']; $base_table = $this->field['settings']['base_table']; // Get the FK that links to the base record. $schema = chado_get_schema($field_table); $pkey = $schema['primary key'][0]; $fkey_lcolumn = key($schema['foreign keys'][$base_table]['columns']); $fkey_rcolumn = $schema['foreign keys'][$base_table]['columns'][$fkey_lcolumn]; // Set some defaults for the empty record. $entity->{$field_name}['und'][0] = array( 'value' => array(), 'chado-' . $field_table . '__' . $pkey => '', 'chado-' . $field_table . '__' . $fkey_lcolumn => '', 'chado-' . $field_table . '__' . 'pub_id' => '', 'uniquename' => '', ); $linker_table = $base_table . '_pub'; $options = array( 'return_array' => 1, ); $record = chado_expand_var($record, 'table', $linker_table, $options); if (count($record->$linker_table) > 0) { $i = 0; foreach ($record->$linker_table as $index => $linker) { $pub = $linker->pub_id; $pub_details = tripal_get_minimal_pub_info($pub); $pub_details['@type'] = $pub->type_id->dbxref_id->db_id->name . ':' . $pub->type_id->dbxref_id->accession; $pub_details['publication']['type'] = $pub->type_id->name; $entity->{$field_name}['und'][$i]['value'] = $pub_details; $entity->{$field_name}['und'][$i]['chado-' . $field_table . '__' . $pkey] = $linker->$pkey; $entity->{$field_name}['und'][$i]['chado-' . $field_table . '__' . $fkey_lcolumn] = $linker->$fkey_lcolumn->$fkey_lcolumn; $entity->{$field_name}['und'][$i]['chado-' . $field_table . '__' . 'pub_id'] = $pub->pub_id; $entity->{$field_name}['und'][$i]['uniquename'] = $pub->uniquename; if (property_exists($pub, 'entity_id')) { $entity->{$field_name}['und'][$i]['value']['entity'] = 'TripalEntity:' . $pub->entity_id; } $i++; } } } /** * * @see TripalField::settingsForm() */ public function settingsForm($has_data) { } /** * * @param unknown $form * @param unknown $form_state */ public function settingsFormValidate($form, &$form_state) { } /** * * @see TripalField::instanceSettingsForm() */ public function instanceSettingsForm() { } /** * * @see TripalField::instanceSettingsFormValidate() */ public function instanceSettingsFormValidate($form, &$form_state) { } }