create(); $base_pkey = $base_table . '_id'; $term = factory('chado.cvterm')->create(); $value = 'chado_API_test_value'; // Linker column $record = ['table' => $base_table, 'id' => $base_record->{$base_pkey}]; $property = [ 'type_id' => $term->cvterm_id, 'value' => $value, ]; chado_insert_property($record, $property); $result = db_select('chado.' . $prop_table, 'p') ->fields('p') ->condition('p.' . $base_pkey, $base_record->{$base_pkey}) ->execute() ->fetchObject(); $this->assertNotEmpty($result); $this->assertEquals($value, $result->value); $this->assertEquals($term->cvterm_id, $result->type_id); $this->assertEquals('0', $result->rank); } /** * Tests chado_get_property() with all prop tables. * * @dataProvider propTableProvider * * @group chado * @group api * @group chado-property */ public function test_chado_get_property($prop_table, $base_table) { $base_record = factory('chado.' . $base_table)->create(); $base_pkey = $base_table . '_id'; $term = factory('chado.cvterm')->create(); $value = 'chado_API_test_value'; // Linker column $record = ['table' => $base_table, 'id' => $base_record->{$base_pkey}]; $property = [ 'type_id' => $term->cvterm_id, 'value' => $value, ]; $prop = chado_insert_property($record, $property); $retrieved = chado_get_property($record, $property); $this->assertNotFalse($retrieved); $this->assertEquals($value, $retrieved->value); $record = ['prop_id' => $prop[$prop_table . '_id'], 'table' => $base_table]; $retrieved = chado_get_property($record, $property); $this->assertNotNull($retrieved); $this->assertEquals($value, $retrieved->value); } /** * Tests chado_update_property() with all prop tables. * * @dataProvider propTableProvider * * @group chado * @group api * @group chado-property */ public function test_chado_update_property($prop_table, $base_table) { $base_record = factory('chado.' . $base_table)->create(); $base_pkey = $base_table . '_id'; $term = factory('chado.cvterm')->create(); $value = 'chado_API_test_value'; $new_value = 'chado_API_new'; // Linker column $record = ['table' => $base_table, 'id' => $base_record->{$base_pkey}]; $property = [ 'type_id' => $term->cvterm_id, 'value' => $value, ]; chado_insert_property($record, $property); $property['value'] = $new_value; chado_update_property($record, $property); $result = db_select('chado.' . $prop_table, 'p') ->fields('p') ->condition('p.' . $base_pkey, $base_record->{$base_pkey}) ->execute() ->fetchObject(); $this->assertNotEmpty($result); $this->assertEquals($new_value, $result->value); $this->assertEquals($term->cvterm_id, $result->type_id); $this->assertEquals('0', $result->rank); } /** * Tests chado_delete_property() with all prop tables. * * @dataProvider propTableProvider * * @group chado * @group api * @group chado-property */ public function test_chado_delete_property($prop_table, $base_table) { $base_record = factory('chado.' . $base_table)->create(); $base_pkey = $base_table . '_id'; $term = factory('chado.cvterm')->create(); $value = 'chado_API_test_value'; // Linker column $record = ['table' => $base_table, 'id' => $base_record->{$base_pkey}]; $property = [ 'type_id' => $term->cvterm_id, 'value' => $value, ]; chado_insert_property($record, $property); chado_delete_property($record, $property); $result = db_select('chado.' . $prop_table, 'p') ->fields('p') ->condition('p.' . $base_pkey, $base_record->{$base_pkey}) ->execute() ->fetchObject(); $this->assertFalse($result); $prop = chado_insert_property($record, $property); $record = ['prop_id' => $prop[$prop_table . '_id'], 'table' => $base_table]; chado_delete_property($record, $property); } /** * Tests chado_get_record_with_property() with all prop tables. * * Note: chado_get_record_with_property() gets all records in the base table * assigned one or more properties. * * @dataProvider propTableProvider * * @group chado * @group api * @group chado-property */ function test_chado_get_record_with_property($prop_table, $base_table) { $base_record = factory('chado.' . $base_table)->create(); $base_pkey = $base_table . '_id'; $term = factory('chado.cvterm')->create(); $value = 'chado_API_test_value'; // Linker column $record = ['table' => $base_table, 'id' => $base_record->{$base_pkey}]; $property = [ 'type_id' => $term->cvterm_id, 'value' => $value, ]; chado_insert_property($record, $property); unset($record['id']); $records = chado_get_record_with_property($record, $property); $this->assertNotEmpty($records); $this->assertEquals(1, count($records)); $base_record = factory('chado.' . $base_table)->create(); $record = ['table' => $base_table, 'id' => $base_record->{$base_pkey}]; chado_insert_property($record, $property); $records = chado_get_record_with_property($record, $property); $this->assertNotEmpty($records); $this->assertEquals(2, count($records)); } /** * Data Provider: All base tables with associated property tables. * * @return * An array where each item specifies the property table * and it's associated base table. */ function propTableProvider() { $prop_tables = []; $base_tables = chado_get_base_tables(); foreach ($base_tables as $base) { $prop = $base . 'prop'; if (chado_table_exists($prop) AND Factory::exists('chado.' . $base)) { $prop_tables[] = [$prop, $base]; } } return $prop_tables; } }