$nid, 'group_id' => $group_id, 'chado_table' => $table, 'chado_field' => $field, 'record_id' => $record_id, 'field_id' => $field_id, 'value' => $value, ]; // Check to see if already exists $exists = db_select('tripal_bulk_loader_constants', 'c') ->fields('c', ['constant_id']) ->condition('nid', $record['nid']) ->condition('record_id', $record['record_id']) ->condition('field_id', $record['field_id']) ->condition('group_id', $record['group_id']) ->execute(); $exists = $exists->fetchObject(); if (!isset($exists)) { $record['constant_id'] = $exists->constant_id; $status = drupal_write_record('tripal_bulk_loader_constants', $record, 'constant_id'); if ($status) { return $record; } else { return FALSE; } } else { $status = drupal_write_record('tripal_bulk_loader_constants', $record); if ($status) { return $record; } else { return FALSE; } } } /** * Check if a bulk loading job has exposed constants * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_has_exposed_fields($node) { // exposed fields isn't set if (!isset($node->exposed_fields)) { return FALSE; } // exposed fields has at least one element if (sizeof($node->exposed_fields) == 1) { // need to check if single element is an empty array $element = reset($node->exposed_fields); if ($element) { return TRUE; } else { return FALSE; } } elseif (sizeof($node->exposed_fields) > 1) { return TRUE; } else { return FALSE; } return FALSE; } /////////////////////////////////////////////////////////// // Set Constants Form (on Bulk Loader Node) /////////////////////////////////////////////////////////// /** * Set constants (exposed fields in template) * * @param $form_state * The current state of the form * @param $node * The node to set constants for * * @return * A form array to be rendered by drupal_get_form() * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_set_constants_form($form, &$form_state, $node) { $form = []; $form['nid'] = [ '#type' => 'hidden', '#value' => $node->nid, ]; $form['#attached']['css'] = [ drupal_get_path('module', 'tripal_bulk_loader') . '/theme/tripal_bulk_loader.css', ]; $form_state['node'] = $node; if (!tripal_bulk_loader_has_exposed_fields($node)) { return $form; } // Check to see if the template has changed since this node was last updated. // If so we need to remove the constant set since it's no longer valid. if ($node->template->changed >= $node->changed AND !empty($node->constants)) { // Save all constants for display to the user. $form['old_constants'] = [ '#type' => 'fieldset', '#title' => 'Previous Constant Set', '#description' => 'This constant set is no longer valid due to changes in the bulk loading template. As such you will need to re-enter it below. Please copy this information somewhere before leaving this page (including entering a constant set) because it will NOT BE SAVED.', '#prefix' => '
', '#suffix' => '
', ]; $form['old_constants']['table'] = [ '#type' => 'markup', '#theme' => 'tripal_bulk_loader_constant_set', '#nid' => $node->nid, '#constants' => $node->constants, '#template' => $node->template, '#options' => ['display_operations' => FALSE], ]; drupal_set_message('Template has been changed since the constant set was added; therefore, your constants are no longer valid. Please re-enter them before loading.', 'warning' ); // Remove all constants for this node. db_delete('tripal_bulk_loader_constants') ->condition('nid', $node->nid) ->execute(); $node->constants = []; } $form['exposed_array'] = [ '#type' => 'hidden', '#value' => serialize($node->exposed_fields), ]; $form['exposed_fields'] = [ '#type' => 'fieldset', '#title' => t('Constant Values'), '#collapsible' => TRUE, '#collapsed' => ($node->template_id) ? FALSE : TRUE, '#prefix' => '
', '#suffix' => '
', ]; // Display table of already added constant sets with the ability to re-arrange and delete $first_constant = reset($node->constants); if (sizeof($node->constants) > 0) { $form['exposed_fields']['explanation-1'] = [ '#type' => 'item', '#markup' => t('You have already added constants to this bulk loading job. Each ' . 'row in the following table represents a set of constants. Each set will be used ' . 'to load your data file with the specified template resulting in the each record ' . 'in the template to be loaded x number of times where there are x sets of ' . 'constants (rows in the following table).'), ]; $form['exposed_fields']['existing'] = [ '#type' => 'markup', '#theme' => 'tripal_bulk_loader_constant_set', '#nid' => $node->nid, '#constants' => $node->constants, '#template' => $node->template, ]; } $form['exposed_fields']['new'] = [ '#type' => 'fieldset', '#title' => t('New set of Constants'), ]; $form['exposed_fields']['new']['explanation-2'] = [ '#type' => 'item', '#markup' => t('The following fields are constants in the selected template that you need to set values for.'), ]; // Add textifelds for exposed fields of the current template $exposed_fields = FALSE; $indexes = []; if (tripal_bulk_loader_has_exposed_fields($node)) { foreach ($node->exposed_fields as $exposed_id => $exposed_index) { $record_id = $exposed_index['record_id']; $field_id = $exposed_index['field_id']; $field = $node->template->template_array[$record_id]['fields'][$field_id]; if ($field['exposed']) { $exposed_fields = TRUE; $indexes[$record_id][] = $field_id; $default_value = ''; if (isset($node->constants[$record_id])) { if (isset($node->constants[$record_id][$field_id])) { $default_value = $node->constants[$exposed_id][$record_id][$field_id]['value']; } } elseif (isset($field['constant value'])) { $default_value = $field['constant value']; } elseif (isset($field['spreadsheet column'])) { $default_value = $field['spreadsheet column']; } switch ($field['type']) { case 'table field': $form['exposed_fields']['new'][$record_id . '-' . $field_id] = [ '#type' => 'textfield', '#title' => t('@title', ['@title' => $field['title']]), '#description' => t('%exposed_description', ['%exposed_description' => $field['exposed_description']]), '#default_value' => $default_value, ]; break; case 'constant': $form['exposed_fields']['new'][$record_id . '-' . $field_id] = [ '#type' => 'textfield', '#title' => t('@title', ['@title' => $field['title']]), '#description' => t('Enter the case-sensitive value of this constant for your data file'), '#default_value' => $default_value, ]; break; } $form['exposed_fields']['new'][$record_id . '-' . $field_id . '-table'] = [ '#type' => 'hidden', '#value' => $node->template->template_array[$record_id]['table'], ]; $form['exposed_fields']['new'][$record_id . '-' . $field_id . '-field'] = [ '#type' => 'hidden', '#value' => $field['field'], ]; $form['exposed_fields']['new'][$record_id . '-' . $field_id . '-type'] = [ '#type' => 'hidden', '#value' => $field['type'], ]; } } } $form['template'] = [ '#type' => 'hidden', '#value' => serialize($node->template->template_array), ]; $form['exposed_fields']['new']['indexes'] = [ '#type' => 'hidden', '#value' => serialize($indexes), ]; if (!$exposed_fields) { $form['exposed_fields']['new']['explanation'] = [ '#type' => 'item', '#value' => t('There are no exposed fields for this template.'), ]; } $form['exposed_fields']['new']['submit-2'] = [ '#type' => 'submit', '#name' => 'add_constant', '#value' => t('Add Constant Set'), ]; return $form; } /** * Validate that the values entered exist in the database * if indicated in hte template array * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_set_constants_form_validate($form, $form_state) { $template = unserialize($form_state['values']['template']); $indexes = unserialize($form_state['values']['indexes']); $op = $form_state['values'][$form_state['clicked_button']['#name']]; if (strcmp('Add Constant Set', $op) == 0) { foreach ($indexes as $record_id => $array) { foreach ($array as $field_id) { if (isset($template[$record_id]['fields'][$field_id]['exposed_validate'])) { if ($template[$record_id]['fields'][$field_id]['exposed_validate']) { $result = chado_query( 'SELECT 1 as valid FROM {' . $template[$record_id]['table'] . '} WHERE ' . $template[$record_id]['fields'][$field_id]['field'] . '=:value', [':value' => $form_state['values'][$record_id . '-' . $field_id]] )->fetchField(); if (!$result) { $msg = 'A ' . $form['exposed_fields']['new'][$record_id . '-' . $field_id]['#title'] . ' of "' . $form['exposed_fields']['new'][$record_id . '-' . $field_id]['#value'] . '" must already exist!'; form_set_error($record_id . '-' . $field_id, $msg); } else { drupal_set_message( t( 'Confirmed a %title of "%value" already exists.', [ '%title' => $form['exposed_fields']['new'][$record_id . '-' . $field_id]['#title'], '%value' => $form['exposed_fields']['new'][$record_id . '-' . $field_id]['#value'], ] ) ); } } } } } } } /** * Insert/update the constants associated with this node * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_set_constants_form_submit($form, $form_state) { // Insert/Update constants $template = unserialize($form_state['values']['template']); $indexes = unserialize($form_state['values']['indexes']); $op = $form_state['values'][$form_state['clicked_button']['#name']]; if (strcmp('Add Constant Set', $op) == 0) { $max_group = db_query("SELECT max(group_id) as value FROM {tripal_bulk_loader_constants} WHERE nid=:nid", [':nid' => $form_state['values']['nid']])->fetchObject(); foreach ($indexes as $record_id => $array) { foreach ($array as $field_id) { tripal_bulk_loader_update_constant( $form_state['values']['nid'], $max_group->value + 1, $form_state['values'][$record_id . '-' . $field_id . '-table'], $form_state['values'][$record_id . '-' . $field_id . '-field'], $record_id, $field_id, $form_state['values'][$record_id . '-' . $field_id] ); } } // Update the node so that the constant set isn't immediatly erased... $node = $form_state['node']; $node->has_header = $node->file_has_header; if ($node = node_submit($node)) { node_save($node); } } } /////////////////////////////////////////////////////////// // Set Constants Form (on Bulk Loader Node) /////////////////////////////////////////////////////////// /** * Edit a constant set (exposed fields in template) * * @param $form_state * The current state of the form * @param $node * The node to set constants for * @param $group_id * The constant set to edit * * @return * A form array to be rendered by drupal_get_form() * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_edit_constant_set_form($form, &$form_state, $node, $group_id) { $form = []; $form['nid'] = [ '#type' => 'hidden', '#value' => $node->nid, ]; $form['group_id'] = [ '#type' => 'hidden', '#value' => $group_id, ]; $form['explanation'] = [ '#type' => 'item', '#value' => t('The following fields are constants in the selected template that you need to set values for.'), ]; // Add textifelds for exposed fields of the current template $exposed_fields = FALSE; $indexes = []; if (tripal_bulk_loader_has_exposed_fields($node)) { foreach ($node->exposed_fields as $exposed_index) { $record_id = $exposed_index['record_id']; $record = $node->template->template_array[$record_id]; $field_id = $exposed_index['field_id']; $field = $node->template->template_array[$record_id]['fields'][$field_id]; if ($field['exposed']) { $exposed_fields = TRUE; $indexes[$record_id][] = $field_id; switch ($field['type']) { case 'table field': $form[$record_id . '-' . $field_id] = [ '#type' => 'textfield', '#title' => t('%title', ['%title' => $field['title']]), '#description' => t('%exposed_description', ['%exposed_description' => $field['exposed_description']]), '#default_value' => (isset($node->constants[$group_id][$record_id][$field_id]['value'])) ? $node->constants[$group_id][$record_id][$field_id]['value'] : $field['constant value'], ]; break; case 'constant': $form[$record_id . '-' . $field_id] = [ '#type' => 'textfield', '#title' => t('%title', ['%title' => $field['title']]), '#description' => t('Enter the case-sensitive value of this constant for your data file'), '#default_value' => (isset($node->constants[$group_id][$record_id][$field_id]['value'])) ? $node->constants[$group_id][$record_id][$field_id]['value'] : $field['constant value'], ]; break; } $form[$record_id . '-' . $field_id . '-table'] = [ '#type' => 'hidden', '#value' => $record['table'], ]; $form[$record_id . '-' . $field_id . '-field'] = [ '#type' => 'hidden', '#value' => $field['field'], ]; $form[$record_id . '-' . $field_id . '-type'] = [ '#type' => 'hidden', '#value' => $field['type'], ]; } } } $form['template'] = [ '#type' => 'hidden', '#value' => serialize($node->template->template_array), ]; $form['indexes'] = [ '#type' => 'hidden', '#value' => serialize($indexes), ]; $form['save'] = [ '#type' => 'submit', '#value' => 'Save', ]; $form['cancel'] = [ '#type' => 'link', '#title' => 'Cancel', '#href' => 'node/' . $node->nid, ]; return $form; } /** * Edit constants in the current constant set * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_edit_constant_set_form_submit($form, &$form_state) { // Update constants $template = unserialize($form_state['values']['template']); $indexes = unserialize($form_state['values']['indexes']); $nid = $form_state['values']['nid']; $op = $form_state['values'][$form_state['clicked_button']['#name']]; if (strcmp('Save', $op) == 0) { $form_state['redirect'] = 'node/' . $nid; $form_state['rebuild'] = FALSE; foreach ($indexes as $record_id => $array) { foreach ($array as $field_id) { tripal_bulk_loader_update_constant( $form_state['values']['nid'], $form_state['values']['group_id'], $form_state['values'][$record_id . '-' . $field_id . '-table'], $form_state['values'][$record_id . '-' . $field_id . '-field'], $record_id, $field_id, $form_state['values'][$record_id . '-' . $field_id] ); } } drupal_set_message(t('The constant set was successfully updated.')); } } /** * Delete a constant set (exposed fields in template) * * @param $form_state * The current state of the form * @param $node * The node to set constants for * @param $group_id * The constant set to delete * * @return * A form array to be rendered by drupal_get_form() * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_delete_constant_set_form($form, &$form_state, $node, $group_id) { $form = []; $form['nid'] = [ '#type' => 'value', '#value' => $node->nid, ]; $form['group_id'] = [ '#type' => 'hidden', '#value' => $group_id, ]; return confirm_form($form, t('Are you sure you want to delete this constant set?'), 'node/' . $node->nid, t('This action cannot be undone.'), t('Delete'), t('Cancel') ); } /** * Delete the current constant set * * @ingroup tripal_bulk_loader */ function tripal_bulk_loader_delete_constant_set_form_submit($form, &$form_state) { $group_id = $form_state['values']['group_id']; $nid = $form_state['values']['nid']; if ($nid && $form_state['values']['confirm']) { $form_state['redirect'] = 'node/' . $nid; $form_state['rebuild'] = FALSE; db_delete('tripal_bulk_loader_constants') ->condition('nid', $nid) ->condition('group_id', $group_id) ->execute(); drupal_set_message(t('Constant set successfully deleted.')); } } /** * Display a constant set. * * @param $varaibles * An array of variables that are available: * -nid: the NID of the bulk loading job node the constants are for. * -constants: An array of constants as loaded by tripal_bulk_loader_load(). * -template: An object containing the template record with unserialized * template_array. * -options: An optional array of options. * * @return * Rendered HTML. */ function theme_tripal_bulk_loader_constant_set($variables) { // Check that there are constants to render. if (empty($variables['constants'])) { return ''; } // Set Defaults. $variables['options'] = (isset($variables['options'])) ? $variables['options'] : []; $variables['options']['display_operations'] = (isset($variables['options']['display_operations'])) ? $variables['options']['display_operations'] : TRUE; // Get all the rows. $rows = []; foreach ($variables['constants'] as $group_id => $set) { $row = []; $row['group_id'] = $group_id; foreach ($set as $record) { foreach ($record as $field) { $index = $field['record_id'] . '-' . $field['field_id']; $row[$index] = $field['value']; } } if ($variables['options']['display_operations']) { $row['operations'] = filter_xss(l(t('Edit'), 'node/' . $variables['nid'] . '/constants/' . $group_id . '/edit') . ' | ' . l(t('Delete'), 'node/' . $variables['nid'] . '/constants/' . $group_id . '/delete')); } $rows[] = $row; } // Get the header using the last constant set. $header = []; $header[0]['group_id'] = [ 'data' => t('Group'), 'header' => TRUE, 'rowspan' => 2, ]; foreach ($set as $record) { foreach ($record as $field) { $index = $field['record_id'] . '-' . $field['field_id']; $header[0][$field['record_id']] = [ 'data' => $variables['template']->template_array[$field['record_id']]['record_id'], 'header' => TRUE, 'colspan' => sizeof($record), ]; $header[1][$index] = [ 'data' => $variables['template']->template_array[$field['record_id']]['fields'][$field['field_id']]['title'], 'header' => TRUE, ]; } } if ($variables['options']['display_operations']) { $header[0]['operations'] = [ 'data' => t('Operations'), 'header' => TRUE, 'rowspan' => 2, ]; } return theme( 'table', [ 'header' => [], 'rows' => array_merge($header, $rows), ] ); }