'', 'chado_column' => '', 'base_table' => '', ); // Provide a list of instance specific settings. These can be access within // the instanceSettingsForm. When the instanceSettingsForm is submitted // then Drupal with automatically change these settings for the instnace. // It is recommended to put settings at the instance level whenever possible. // If you override this variable in a child class be sure to replicate the // term_name, term_vocab, term_accession and term_fixed keys as these are // required for all TripalFields. public static $default_instance_settings = array( // The short name for the vocabulary (e.g. shcema, SO, GO, PATO, etc.). 'term_vocabulary' => 'local', // The name of the term. 'term_name' => 'property', // The unique ID (i.e. accession) of the term. 'term_accession' => 'property', // Set to TRUE if the site admin is allowed to change the term // type. This will create form elements when editing the field instance // to allow the site admin to change the term settings above. 'term_fixed' => FALSE, ); // Set this to the name of the storage backend that by default will support // this field. public static $storage = 'field_chado_storage'; // The default widget for this field. public static $default_widget = 'chado_linker__prop_widget'; // The default formatter for this field. public static $default_formatter = 'chado_linker__prop_formatter'; // -------------------------------------------------------------------------- // PROTECTED CLASS MEMBERS -- DO NOT OVERRIDE // -------------------------------------------------------------------------- // An array containing details about the field. The format of this array // is the same as that returned by field_info_fields() protected $field; // An array containing details about an instance of the field. A field does // not have to have an instance. But if dealing with an instance (such as // when using the widgetForm, formatterSettingsForm, etc.) it should be set. protected $instance; /** * * @see TripalField::validate() */ public function validate($entity_type, $entity, $field, $items, &$errors) { } /** * * @see TripalField::load() */ public function load($entity, $details = array()) { $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->field['settings']['chado_table']; $field_column = $this->field['settings']['chado_column']; $base_table = $this->field['settings']['base_table']; $matches = array(); preg_match('/(.*?)__(\d+)/', $field_name, $matches); $table_name = $matches[1]; $cvterm_id = $matches[2]; // Get the FK that links to the base record. $schema = chado_get_schema($field_table); $pkey = $schema['primary key'][0]; $fkey_lcolumn = key($schema['foreign keys'][$base_table]['columns']); $fkey_rcolumn = $schema['foreign keys'][$base_table]['columns'][$fkey_lcolumn]; // Set some defaults for the empty record. $chado_record = $entity->chado_record; $entity->{$field_name}['und'][0] = array( 'value' => '', 'chado-' . $field_table . '__' . $pkey => '', 'chado-' . $field_table . '__' . $fkey_lcolumn => $chado_record->{$fkey_lcolumn}, 'chado-' . $field_table . '__value' => '', 'chado-' . $field_table . '__type_id' => '', 'chado-' . $field_table . '__rank' => '', ); // Get the properties associated with this base record for this fields // given type. $columns = array('*'); $match = array( $fkey_lcolumn => $chado_record->{$fkey_lcolumn}, 'type_id' => $cvterm_id, ); $options = array( 'return_array' => TRUE, 'order_by' => array('rank' => 'ASC') ); $properties = chado_select_record($field_table, $columns, $match, $options); for ($i = 0; $i < count($properties); $i++) { $property = $properties[$i]; foreach ($schema['fields'] as $fname => $details) { $entity->{$field_name}['und'][$i] = array( 'value' => array(), 'chado-' . $field_table . '__' . $pkey => $property->$pkey, 'chado-' . $field_table . '__' . $fkey_lcolumn => $property->$fkey_lcolumn, 'chado-' . $field_table . '__value' => $property->value, 'chado-' . $field_table . '__type_id' => $property->type_id, 'chado-' . $field_table . '__rank' => $property->rank, ); } } } }