disable_type = TRUE; } /** * Include the @type element form the data of this resource. */ public function enableType() { $this->disable_type = FALSE; } /** * Exclude the @id element form the data of this resource. */ public function disableID() { $this->disable_id = TRUE; } /** * Include the @id element form the data of this resource. */ public function enableID() { $this->disable_id = FALSE; } /** * Implements the constructor. * * @param $service_path * */ public function __construct($service_path) { $this->context = []; $this->data = []; $this->service_path = $service_path; // First, add the RDFS and Hydra vocabularies to the context. All Tripal // web services should use these. $vocab = tripal_get_vocabulary_details('rdfs'); $this->addContextItem('rdfs', $vocab['sw_url']); $vocab = tripal_get_vocabulary_details('hydra'); $this->addContextItem('hydra', $vocab['sw_url']); $vocab = tripal_get_vocabulary_details('dc'); $this->addContextItem('dc', $vocab['sw_url']); $vocab = tripal_get_vocabulary_details('schema'); $this->addContextItem('schema', $vocab['sw_url']); $vocab = tripal_get_vocabulary_details('local'); $this->addContextItem('local', url($vocab['sw_url'], ['absolute' => TRUE])); $this->data['@id'] = $service_path; $this->data['@type'] = ''; } /** * Adds a term to the '@context' section for this resource. * * This function should not be called directory. Rather, the * addContextTerm() and addContextVocab() functions built * into the TripalWebService class should be used as these will help * ensure terms are added proper for the context of the web service. * * @param $name * The term name. * @param $iri * The Internationalized Resource Identifiers or it's shortcut. * */ public function addContextItem($name, $iri) { if (array_key_exists($name, $this->context)) { return; } $this->context[$name] = $iri; } /** * Removes a term for the '@context' section for this resource. * * @param $name * The term name. * @param $iri * The Internationalized Resource Identifiers or it's shortcut. */ public function removeContextItem($name, $iri) { // TODO: make sure that if a shortcut is used that the parent is present. unset($this->context[$name]); } /** * Sets the resource type. * * The type exist in the context of the web service. * * @param $type * The type */ public function setType($type) { $this->checkKey($type); $this->type = $type; $this->data['@type'] = $type; } /** * Sets the service path for this resource. * * By default, the service path is provided to the constructor, but * this function will allow it to be changed if needed. * * @param $service_path * The URL for the service path. */ public function setServicePath($service_path) { $this->service_path = $service_path; $this->data['@id'] = $service_path; } /** * Checks a key to ensure it is in the Context before being used. * * This function should be used before adding a property or type to this * resource. It ensures that the key for the property is already in the * context. * * @param $key * The key to check. * * @throws Exception */ private function checkKey($key) { // Make sure the key is already present in the context. $keys = array_keys($this->context); // Keys that are full HTML are acceptable if (preg_match('/^(http|https):\/\/.*/', $key)) { return; } // If the key has a colon separating the vocabulary and the term then we // just need to make sure that the vocabulary is present. $matches = []; if (preg_match('/^(.*?):(.*?)$/', $key, $matches)) { $vocab = $matches[1]; $accession = $matches[2]; // The underscore represents the blank node. So, these keys are okay. if ($vocab == '_') { return; } // If the vocabulary is not in the. if (!in_array($vocab, $keys)) { throw new Exception(t("The key, !key, has a vocabulary that has not yet been added to the " . "context. Use the addContextItem() function to add the vocabulary prior to adding a value for it.", ['!key' => $key])); } } else { // If the key is not in the context then throw an error. if (!in_array($key, $keys)) { throw new Exception(t("The key, !key, has not yet been added to the " . "context. Use the addContextItem() function to add this key prior to adding a value for it.", ['!key' => $key])); } } } /** * Checks the value to make sure there are no problems with. * * Will also expand any TriaplWebServiceResource by adding their * context to this resource and substitute their data in place of the * value. * * @param $value * */ private function checkValue(&$value) { if (is_array($value)) { foreach ($value as $k => $v) { // If this is an integer then this is a numeric indexed array // and we can just check the value. If not, then make sure the // key has been added to the context. if (preg_match('/^\d+$/', $k)) { $this->checkValue($value[$k]); } else { if ($k != '@id' and $k != '@type') { $this->checkKey($k); } $this->checkValue($value[$k]); } } } else { // If this is a TripalWebServiceResource then get it's data and use that // as the new value. Also, add in the elements context to this resource. if (is_a($value, 'TripalWebServiceResource') or is_subclass_of($value, 'TripalWebServiceResource')) { $context = $value->getContext(); foreach ($context as $k => $v) { $this->addContextItem($k, $v); } $value = $value->getData(); } } } /** * Set's the unique identifier for the resource. * * Every resource must have a unique Idientifer. In JSON-LD the '@id' element * identifies the IRI for the resource which will include the unique * identifier. The TraiplWebService to which a resource is added will * build the IRIs but it needs the unique ID of each resource. * * @param $id * The unique identifier for the resource. */ public function setID($id) { $this->id = $id; $this->data['@id'] = $this->getURI($id); } /** * Retrieves the IRI for an entity of a given ID in this web service. * * @param $id * The unique identifier for the resource. */ public function getURI($id) { // If this is a key/value pair for an id and if the vocab portion is // an underscore then this represents a blank node and we don't want // to add the full path. $matches = []; if (preg_match('/^(.*?):(.*?)$/', $id, $matches)) { $vocab = $matches[1]; if ($vocab == '_') { return $id; } return $id; } else { return $this->service_path . '/' . $id; } } /** * Retrieves the unique identifier for this resource. * * Every resource must have a unique Idientifer. In JSON-LD the '@id' element * identifies the IRI for the resource which will include the unique * identifier. The TraiplWebService to which a resource is added will * build the IRIs but it needs the unique ID of each resource. * * @return * The unique identifier for the resource. */ public function getID() { return $this->id; } /** * Retrieves the type of this resource. * * @return * The name of the resource. */ public function getType() { return $this->type; } /** * Adds a new key/value pair to the web serivces response. * * The value must either be a scalar or another TripalWebServiceResource * object. If the same key is usesd multiple times then the resulting * resource will be presented as an array of elements. * * @param unknown $key * The name of the $key to add. This key must already be present in the * web service context by first adding it using the addContextItem() * member function. * @param unknown $value * The value of the key which must either be a scalar or a * TripalWebServiceResource instance. */ public function addProperty($key, $value) { $this->checkKey($key); $this->checkValue($value); // If this is a numeric keyed array then add each item. if (is_array($value) and count(array_filter(array_keys($value), 'is_int')) == count(array_keys($value))) { if (!array_key_exists($key, $this->data)) { $this->data[$key] = []; } foreach ($value as $item) { $this->addProperty($key, $item); } return; } // If this key doesn't exist then add the value directly to the key. if (!array_key_exists($key, $this->data)) { $this->data[$key] = $value; } // Else if it does exist then we need to make sure that the element is // an array and add it. else { // If this is the second element, then convert it to an array. The // second test in the condition below is for for a numeric array. if (!is_array($this->data[$key]) or count(array_filter(array_keys($this->data[$key]), 'is_string')) > 0) { $element = $this->data[$key]; $this->data[$key] = []; $this->data[$key][] = $element; } $this->data[$key][] = $value; } } /** * Retrieves the value of a property. * * @param $key * The name of the property. * * @param * The value of the property. This could be a scalar, array or * a TripalWebService object. */ function getProperty($key) { return $this->data[$key]; } /** * Retrieves the data section of the resource. * * The JSON-LD response constists of two sections the '@context' section * and the data section. This function only returns the data section * for this resource * * @return * An associative array containing the data section of the response. */ public function getData() { $data = $this->data; if ($this->disable_id) { unset($data['@id']); } if ($this->disable_type) { unset($data['@type']); } return $data; } /** * Retrieves the data section of the resource. * * The JSON-LD response constists of two sections the '@context' section * and the data section. This function only returns the data section * for this resource * * @return * An associative array containing the data section of the response. */ public function getContext() { return $this->context; } /** * Copies the context from a given TripalWebService resource to this * resource. * * @param $resource */ public function setContext($resource) { if (!is_a($resource, 'TripalWebServiceResource')) { throw new Exception("The \$resource argument provided to the TripalWebServiceResource::setContext() function must be an instance of a TripalWebServiceResource."); } $this->context = $resource->getContext(); } }