'. t("Displays links to nodes created on this date") . '

'; break; } return $output; } /** * Implements hook_permission(). * * Set the permission types that the chado module uses. Essentially we * want permissionis that protect creation, editing and deleting of chado * data objects * * @ingroup tripal_legacy_featuremap */ function tripal_featuremap_permission() { return array( /* 'access chado_featuremap content' => array( 'title' => t('View Maps'), 'description' => t('Allow users to view map pages.'), ), 'create chado_featuremap content' => array( 'title' => t('Create Maps'), 'description' => t('Allow users to create new map pages.'), ), 'delete chado_featuremap content' => array( 'title' => t('Delete Maps'), 'description' => t('Allow users to delete map pages.'), ), 'edit chado_featuremap content' => array( 'title' => t('Edit Maps'), 'description' => t('Allow users to edit map pages.'), ), 'administer tripal featuremap' => array( 'title' => t('Administer Maps'), 'description' => t('Allow users to administer all maps.'), ), */ ); } /** * Implements hook_menu(). * * Menu items are automatically added for the new node types created * by this module to the 'Create Content' Navigation menu item. This function * adds more menu items needed for this module. * * @ingroup tripal_legacy_featuremap */ function tripal_featuremap_menu() { $items = array(); // The administative settings menu $items['admin/tripal/legacy/tripal_featuremap'] = array( 'title' => 'Feature Maps', 'description' => 'A map of features from the chado database (e.g. genetic map)', 'page callback' => 'tripal_featuremap_admin_featuremaps_listing', 'access arguments' => array('administer tripal featuremap'), 'type' => MENU_NORMAL_ITEM, ); $items['admin/tripal/legacy/tripal_featuremap/help'] = array( 'title' => 'Help', 'description' => 'Basic Description of Tripal Map Module Functionality', 'page callback' => 'theme', 'page arguments' => array('tripal_featuremap_help'), 'access arguments' => array('administer tripal featuremap'), 'type' => MENU_LOCAL_TASK, 'weight' => 10 ); $items['admin/tripal/legacy/tripal_featuremap/configuration'] = array( 'title' => 'Settings', 'description' => 'Manage integration of Chado maps including associated features.', 'page callback' => 'drupal_get_form', 'page arguments' => array('tripal_featuremap_admin'), 'access arguments' => array('administer tripal featuremap'), 'type' => MENU_LOCAL_TASK, 'weight' => 2 ); $items['admin/tripal/legacy/tripal_featuremap/sync'] = array( 'title' => ' Sync', 'description' => 'Sync featuremaps from Chado with Drupal', 'page callback' => 'drupal_get_form', 'page arguments' => array('chado_node_sync_form', 'tripal_featuremap', 'chado_featuremap'), 'access arguments' => array('administer tripal featuremap'), 'type' => MENU_LOCAL_TASK, 'weight' => 0 ); $items['admin/tripal/legacy/tripal_featuremap/chado_featuremap_toc'] = array( 'title' => ' TOC', 'description' => 'Manage the table of contents for feature map nodes.', 'page callback' => 'drupal_get_form', 'page arguments' => array('tripal_core_content_type_toc_form', 'chado_featuremap'), 'access arguments' => array('administer tripal featuremap'), 'type' => MENU_LOCAL_TASK, 'file' => 'includes/tripal_core.toc.inc', 'file path' => drupal_get_path('module', 'tripal_core'), 'weight' => 3 ); $items['admin/tripal/legacy/tripal_featuremap/views/featuremaps/enable'] = array( 'title' => 'Enable featuremap Administrative View', 'page callback' => 'tripal_enable_view', 'page arguments' => array('tripal_featuremap_admin_featuremaps', 'admin/tripal/legacy/tripal_featuremap'), 'access arguments' => array('administer tripal featuremap'), 'type' => MENU_CALLBACK, ); return $items; } /** * Implements hook_search_biological_data_views(). * * Adds the described views to the "Search Data" Page created by Tripal Views */ function tripal_featuremap_search_biological_data_views() { return array( 'tripal_featuremap_user_featuremaps' => array( 'machine_name' => 'tripal_featuremap_user_featuremaps', 'human_name' => 'Maps', 'description' => 'A map of features from the chado database (e.g. genetic map)', 'link' => 'chado/featuremap' ), ); } /** * Implements hook_views_api(). * * Essentially this hook tells drupal that there is views support for * for this module which then includes tripal_featuremap.views.inc where all the * views integration code is * * @ingroup tripal_legacy_featuremap */ function tripal_featuremap_views_api() { return array( 'api' => 3.0, ); } /** * Implements hook_theme(). * * We need to let drupal know about our theme functions and their arguments. * We create theme functions to allow users of the module to customize the * look and feel of the output generated in this module * * @ingroup tripal_legacy_featuremap */ function tripal_featuremap_theme($existing, $type, $theme, $path) { $core_path = drupal_get_path('module', 'tripal_core'); $items = array( 'node__chado_featuremap' => array( 'template' => 'node--chado-generic', 'render element' => 'node', 'base hook' => 'node', 'path' => "$core_path/theme/templates", ), 'tripal_featuremap_base' => array( 'variables' => array('node' => NULL), 'template' => 'tripal_featuremap_base', 'path' => "$path/theme/templates", ), 'tripal_featuremap_properties' => array( 'variables' => array('node' => NULL), 'template' => 'tripal_featuremap_properties', 'path' => "$path/theme/templates", ), 'tripal_featuremap_featurepos' => array( 'variables' => array('node' => NULL), 'template' => 'tripal_featuremap_featurepos', 'path' => "$path/theme/templates", ), 'tripal_featuremap_publication' => array( 'variables' => array('node' => NULL), 'template' => 'tripal_featuremap_publication', 'path' => "$path/theme/templates", ), 'tripal_featuremap_references' => array( 'variables' => array('node' => NULL), 'template' => 'tripal_featuremap_references', 'path' => "$path/theme/templates", ), 'tripal_featuremap_help' => array( 'template' => 'tripal_featuremap_help', 'variables' => array(NULL), 'path' => "$path/theme/templates", ), 'tripal_featuremap_teaser' => array( 'template' => 'tripal_featuremap_teaser', 'variables' => array(NULL), 'path' => "$path/theme/templates", ), // templates for the chado_feature nodes: 'tripal_feature_featurepos' => array( 'variables' => array('node' => NULL), 'template' => 'tripal_feature_featurepos', 'path' => "$path/theme/templates", ), ); return $items; } /** * Implementation of hook_form_alter() * * @param $form * @param $form_state * @param $form_id * * @ingroup tripal_legacy_featuremap */ function tripal_featuremap_form_alter(&$form, &$form_state, $form_id) { if ($form_id == "chado_featuremap_node_form") { // turn of preview button for insert/updates $form['actions']['preview']['#access'] = FALSE; //remove the body field unset($form['body']); } }