dt('Imports publications from remote databases using saved configuration settings.'), 'examples' => array( 'Standard example' => 'drush tripal-pubs-import', ), 'aliases' => array('tpubs-import'), ); $items['tripal-pubs-update'] = array( 'description' => dt('Updates publication information for publications with a supported database cross-reference.'), 'options' => array( 'create_contacts' => dt('provide this option to create or update contacts for authors. By default contacts are not created or updated.'), 'dbxref' => dt('An accession number for a publication from a remote database (e.g. PMID:23582642)') ), 'examples' => array( 'Standard example' => 'drush tripal-pubs-update', 'Create contacts during update' => 'drush tripal-pubs-update --create_contacts=1', 'Update a single record' => 'drush tripal-pubs-update --dbxref=PMID:23582642' ), 'aliases' => array('tpubs-update'), ); return $items; } /** * Imports publications into Chado * */ function drush_tripal_pub_tripal_pubs_import() { tripal_pub_import_publications(); } /** * Imports publications into Chado * */ function drush_tripal_pub_tripal_pubs_update() { $create_contacts = drush_get_option('create_contacts'); $dbxref = drush_get_option('dbxref'); tripal_pub_update_publications($create_contacts, $dbxref); }