'Relationship',
'empty' => 'There are no relationships',
];
/**
*
* @see TripalFieldFormatter::settingsForm()
*/
public function settingsForm($view_mode, $form, &$form_state) {
$display = $this->instance['display'][$view_mode];
$settings = $display['settings'];
$element = [];
$element['title'] = [
'#type' => 'textfield',
'#title' => 'Table Header',
'#default_value' => array_key_exists('title', $settings) ? $settings['title'] : 'Relationship',
];
$element['empty'] = [
'#type' => 'textfield',
'#title' => 'Empty text',
'#default_value' => array_key_exists('empty', $settings) ? $settings['empty'] : 'There are no relationships',
];
return $element;
}
/**
* @see TripalFieldFormatter::settingsSummary()
*/
public function settingsSummary($view_mode) {
$display = $this->instance['display'][$view_mode];
$settings = $display['settings'];
$summary = t('Title: @title
Empty: @empty',
[
'@title' => $settings['title'],
'@empty' => $settings['empty'],
]
);
return $summary;
}
/**
*
* @see TripalFieldFormatter::view()
*/
public function view(&$element, $entity_type, $entity, $langcode, $items, $display) {
// Get the settings
$settings = $display['settings'];
$rows = [];
$headers = [$settings['title']];
foreach ($items as $delta => $item) {
if (empty($item['value'])) {
continue;
}
$subject_name = $item['value']['local:relationship_subject']['schema:name'];
$subject_type = $item['value']['local:relationship_subject']['rdfs:type'];
$object_name = $item['value']['local:relationship_object']['schema:name'];
$object_type = $item['value']['local:relationship_object']['rdfs:type'];
$phrase = $item['value']['SIO:000493'];
// Handle some special cases.
// For mRNA objects we don't want to show the CDS, exons, 5' UTR, etc.
// we want to show the parent gene and the protein.
if ($object_type == 'mRNA' and
(in_array($subject_type, [
'CDS',
'exon',
'five_prime_UTR',
'three_prime_UTR',
]))) {
continue;
}
// Add bold font to the object and subject names.
// @todo add back in bolding...
// @todo Fix Current Bug: if type name is in the object name, wierd bolding happens.
// $phrase = preg_replace("/$subject_type/", "$subject_type", $phrase);
// $phrase = preg_replace("/$object_type/", "$object_type", $phrase);
// Convert the object/subject to a link if an entity exists for it.
if (array_key_exists('entity', $item['value']['local:relationship_object'])) {
list($entity_type, $object_entity_id) = explode(':', $item['value']['local:relationship_object']['entity']);
if ($object_entity_id != $entity->id) {
$link = l($object_name, 'bio_data/' . $object_entity_id);
$phrase = preg_replace("/$object_name/", $link, $phrase);
}
}
if (array_key_exists('entity', $item['value']['local:relationship_subject'])) {
list($entity_type, $subject_entity_id) = explode(':', $item['value']['local:relationship_subject']['entity']);
if ($subject_entity_id != $entity->id) {
$link = l($subject_name, 'bio_data/' . $subject_entity_id);
$phrase = preg_replace("/$subject_name/", $link, $phrase);
}
}
$rows[][] = [
'data' => $phrase,
//'class' => array('tripal-entity-unattached field-items')
];
}
// Build the pager
$items_per_page = array_key_exists('items_per_page', $this->instance['settings']) ? $this->instance['settings']['items_per_page'] : 10;
$total_records = count($rows);
$total_pages = (int) ($total_records / $items_per_page) + 1;
$pelement = 0; //$this->getPagerElementID();
$current_page = pager_default_initialize($total_records, $items_per_page, $pelement);
$pager = theme('pager', [
'tags' => [],
'element' => $pelement,
'parameters' => [],
'quantity' => $total_pages,
]);
$pager = $this->ajaxifyPager($pager, $entity);
$page_items = array_chunk($rows, $items_per_page);
$caption = '';
if ($total_records == 1) {
$caption = 'There is ' . count($rows) . ' relationship.';
}
else {
$caption = 'There are ' . count($rows) . ' relationships.';
}
$content = theme_table([
'header' => $headers,
'rows' => count($rows) > 0 ? $page_items[$current_page] : [],
'attributes' => [
'class' => 'tripal-data-table',
],
'sticky' => FALSE,
'caption' => $caption,
'colgroups' => [],
'empty' => $settings['empty'],
]);
$element[0] = [
'#type' => 'markup',
'#markup' => $content . $pager,
];
}
}