featureloc_sequences
*
*/
$feature = $variables['node']->feature;
// we don't want to get the sequence for traditionally large types. They are
// too big, bog down the web browser, take longer to load and it's not
// reasonable to print them on a page.
$residues ='';
if(strcmp($feature->type_id->name,'scaffold') !=0 and
strcmp($feature->type_id->name,'chromosome') !=0 and
strcmp($feature->type_id->name,'supercontig') !=0 and
strcmp($feature->type_id->name,'pseudomolecule') !=0) {
$feature = tripal_core_expand_chado_vars($feature,'field','feature.residues');
$residues = $feature->residues;
}
// get the sequence derived from alignments
$feature = $variables['node']->feature;
$featureloc_sequences = $feature->featureloc_sequences;
if ($residues or count($featureloc_sequences) > 0) { ?>
0){
foreach($featureloc_sequences as $src => $attrs){
print $attrs['formatted_seq'];
}
}
// add in the residues if they are present
if ($residues) { ?>
",$feature->residues); ?>