'', 'chado_column' => '', 'base_table' => '', 'semantic_web' => '', ); // Set this to the name of the storage backend that by default will support // this field. public static $default_storage = 'field_chado_storage'; /** * @see TripalField::formatterView() */ public function formatterView(&$element, $entity_type, $entity, $langcode, $items, $display) { $field_name = $this->field['field_name']; $chado_table = $this->field['settings']['chado_table']; $properties = array(); foreach ($items as $delta => $item) { $properties[] = $item['chado-' . $chado_table . '__value']; } $content = implode(', ', $properties); if (count($items) > 0) { $element[0] = array( '#type' => 'markup', '#markup' => $content, ); } } /** * @see TripalField::widgetForm() */ public function widgetForm(&$widget, &$form, &$form_state, $langcode, $items, $delta, $element) { parent::widgetForm($widget, $form, $form_state, $langcode, $items, $delta, $element); $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->field['settings']['chado_table']; $field_column = $this->field['settings']['chado_column']; // Get the table name and cvterm that this field maps to. $matches = array(); preg_match('/(.*?)__(\d+)/', $field_name, $matches); // If the field name is not properly formatted then we can't tell what // table and type this is. So just return. if (count($matches) != 3) { return $widget; } $table_name = $matches[1]; $cvterm_id = $matches[2]; // Get the name of the pkey field for this property table and the name // of the FK field that links to the base table. $schema = chado_get_schema($table_name); $pkey = $schema['primary key'][0]; $base_table = $this->field['settings']['base_table']; $lfkey_field = key($schema['foreign keys'][$base_table]['columns']); $rfkey_field = $schema['foreign keys'][$base_table]['columns'][$lfkey_field]; // Get the field defaults. $fk_value =key_exists(0, $items) ? $items[0]['chado-' . $field_table . '__' . $lfkey_field] : ''; $propval = ''; if (array_key_exists($delta, $items)) { $propval = tripal_get_field_item_keyval($items, $delta, 'chado-' . $table_name . '__value', $propval); } // The group of elements all-together need some extra functionality // after building up the full list (like draggable table rows). $widget['#theme'] = 'field_multiple_value_form'; $widget['#title'] = $element['#title']; $widget['#description'] = $element['#description']; $widget['#field_name'] = $element['#field_name']; $widget['#language'] = $element['#language']; $widget['#weight'] = isset($element['#weight']) ? $element['#weight'] : 0; //$widget['#element_validate'] = array('chado_linker__prop_widget_validate'); $widget['#cardinality'] = 1; $widget['value'] = array( '#type' => 'value', '#value' => key_exists($delta, $items) ? $items[$delta]['value'] : '', ); $widget['chado-' . $table_name . '__' . $pkey] = array( '#type' => 'hidden', '#default_value' => !empty($items[$delta]['chado-' . $field_table . '__' . $pkey]) ? $items[$delta]['chado-' . $field_table . '__' . $pkey] : '', ); $widget['chado-' . $table_name . '__' . $lfkey_field] = array( '#type' => 'hidden', '#value' => $fk_value, ); $widget['chado-' . $table_name . '__value'] = array( '#type' => 'textfield', '#default_value' => $propval, ); $widget['chado-' . $table_name . '__type_id'] = array( '#type' => 'hidden', '#value' => $cvterm_id, ); $widget['chado-' . $table_name . '__rank'] = array( '#type' => 'hidden', '#value' => $delta, ); } /** * @see TripalField::validate() */ public function validate($entity_type, $entity, $field, $items, &$errors) { /* $field_name = $this->field['field_name']; $matches = array(); // Get the record and table mapping info. $chado_table = $entity->chado_table; $chado_column = $entity->chado_column; // Get the table name and cvterm_id for this field. preg_match('/(.*?)__(\d+)/', $field_name, $matches); $table_name = $matches[1]; $cvterm_id = $matches[2]; // Get the name of the pkey field for this property table and the name // of the FK field that links to the base table. $schema = chado_get_schema($table_name); $pkey = $schema['primary key'][0]; $lfkey_field = key($schema['foreign keys'][$chado_table]['columns']); // If we don't have a property value then we need to set all other fields // to be empty so that when the module tries to save the field on the // entity it won't try to save a partial record. // $pkey_val = tripal_chado_get_field_form_values($field_name, $form_state, $delta); // $prop_value = tripal_chado_get_field_form_values($field_name, $form_state, $delta, $table_name . "__value"); // $fk_val = tripal_chado_get_field_form_values($field_name, $form_state, $delta, $table_name . '__' . $lfkey_field); // $type_id = tripal_chado_get_field_form_values($field_name, $form_state, $delta, $table_name . '__type_id'); if (!$prop_value) { tripal_chado_set_field_form_values($field_name, $form_state, '', $delta, $table_name . '__' . $lfkey_field); tripal_chado_set_field_form_values($field_name, $form_state, '', $delta, $table_name . '__value'); tripal_chado_set_field_form_values($field_name, $form_state, '', $delta, $table_name . '__type_id'); tripal_chado_set_field_form_values($field_name, $form_state, '', $delta, $table_name . '__rank'); } else { $rank = tripal_chado_get_field_form_values($field_name, $form_state, $delta, '_weight'); tripal_chado_set_field_form_values($field_name, $form_state, $rank, $delta, $table_name . '__rank'); } // Remove the properties for this record. We will re-add it. Otherwise, // if we change ranks, we wind up with multiple records in the property table. if ($pkey_val) { $match = array( $pkey => $pkey_val ); chado_delete_record($table_name, $match); } */ } /** * @see TripalField::widgetFormSubmit() */ public function widgetFormSubmit($form, &$form_state, $entity_type, $entity, $langcode, $delta) { $field_table = $this->field['settings']['chado_table']; // Don't save if there is no value for prop if (!trim($form_state['values'][$field_name][$langcode][$delta]['chado-' . $field_table . '__' . 'value'])) { foreach($form_state['values'][$field_name][$langcode][$delta] AS $key => $value) { if (preg_match('/^chado-/', $key)) { $form_state['values'][$field_name][$langcode][$delta][$key] = '__NULL__'; } } } } /** * @see TripalField::load() */ public function load($entity, $details = array()) { $field_name = $this->field['field_name']; $field_type = $this->field['type']; $field_table = $this->field['settings']['chado_table']; $field_column = $this->field['settings']['chado_column']; $base_table = $this->field['settings']['base_table']; $matches = array(); preg_match('/(.*?)__(\d+)/', $field_name, $matches); $table_name = $matches[1]; $cvterm_id = $matches[2]; // Get the FK that links to the base record. $schema = chado_get_schema($field_table); $pkey = $schema['primary key'][0]; $fkey_lcolumn = key($schema['foreign keys'][$base_table]['columns']); $fkey_rcolumn = $schema['foreign keys'][$base_table]['columns'][$fkey_lcolumn]; // Set some defaults for the empty record. $chado_record = $entity->chado_record; $entity->{$field_name}['und'][0] = array( 'value' => '', 'chado-' . $field_table . '__' . $pkey => '', 'chado-' . $field_table . '__' . $fkey_lcolumn => $chado_record->{$fkey_lcolumn}, 'chado-' . $field_table . '__value' => '', 'chado-' . $field_table . '__type_id' => '', 'chado-' . $field_table . '__rank' => '', ); // Get the properties associated with this base record for this fields // given type. $columns = array('*'); $match = array( $fkey_lcolumn => $chado_record->{$fkey_lcolumn}, 'type_id' => $cvterm_id, ); $options = array( 'return_array' => TRUE, 'order_by' => array('rank' => 'ASC') ); $properties = chado_select_record($field_table, $columns, $match, $options); for ($i = 0; $i < count($properties); $i++) { $property = $properties[$i]; foreach ($schema['fields'] as $fname => $details) { $entity->{$field_name}['und'][$i] = array( 'value' => array(), 'chado-' . $field_table . '__' . $pkey => $property->$pkey, 'chado-' . $field_table . '__' . $fkey_lcolumn => $property->$fkey_lcolumn, 'chado-' . $field_table . '__value' => $property->value, 'chado-' . $field_table . '__type_id' => $property->type_id, 'chado-' . $field_table . '__rank' => $property->rank, ); } } } } /** * * @param unknown $form * @param unknown $form_state */ function chado_linker__prop_widget_form_ajax_callback($form, $form_state) { $field_name = $form_state['triggering_element']['#parents'][0]; return $form[$field_name]; }