$bundle_name)); $term = tripal_load_term_entity(array('term_id' => $bundle->term_id)); // Iterate through the fields of this bundle. foreach ($instances as $key => $instance){ $instance_name = $instance['field_name']; if($instance_name=="rdfs__type"){ array_push($summary_fields, $instance_name); $fields_with_regions[$instance_name]= 'right'; } else { //TODO: How do we handle non-chado dbs, placement of fields within // tripal panes might need to be done in a hook. $instance_base_table = array_key_exists('base_table', $instance['settings']) ? $instance['settings']['base_table'] : ''; $instance_base_chado = array_key_exists('chado_table', $instance['settings']) ? $instance['settings']['chado_table'] : ''; $prop_table = strpos($instance_base_chado, 'prop'); $data_sequence = strpos($instance_name, 'data__sequence'); if ($instance_base_chado && $instance_base_table){ if ($instance_base_chado == $instance_base_table){ if ($prop_table !== FALSE){ // Properties section instances. array_push($prop_fields, $instance_name); $fields_with_regions[$instance_name]= 'right'; } elseif ($data_sequence !== FALSE) { // Data sequence section instances. array_push($data_sequence_fields, $instance_name); $fields_with_regions[$instance_name] = 'right'; } else { // Overview section instances. array_push($summary_fields, $instance_name); $fields_with_regions[$instance_name] = 'right'; } } elseif ($instance_base_chado != $instance_base_table){ if ($prop_table !== FALSE){ // Properties section instances. array_push($prop_fields, $instance_name); $fields_with_regions[$instance_name]= 'right'; } elseif ($data_sequence !== FALSE){ // Data sequence section instances. array_push($data_sequence_fields, $instance_name); $fields_with_regions[$instance_name]= 'right'; } else { // Linker section instances. array_push($all_other_fields, $instance); $fields_with_regions[$instance_name]= 'right'; // Update the display settings so that the title is hidden. $instance['display']['default']['label'] = 'hidden'; field_update_instance($instance); } } } else { // The tripal_chado module adds an image to the organism content // type so we want to make sure that image goes in the summary. // It is not a TripalField so it won't have a chado table. if ($instance_name == 'data__image' and $term->name == 'organism') { array_push($summary_fields, $instance_name); $fields_with_regions[$instance_name] = 'right'; } } } $i++; } // Consolidate the field sets. if(!empty($summary_fields)){ _summary_field_group_info($bundle_name, $summary_fields); // Add the fields to the regions. array_unshift($summary_fields, 'group_summary_tripalpane', 'group_summary', 'group_summary_table'); $fields_with_regions += [ 'group_summary_tripalpane' =>'right', 'group_summary' => 'right', 'group_summary_table' => 'right' ]; $region_right = array_merge($summary_fields, $region_right); } if (!empty($prop_fields)){ _prop_field_group_info($bundle_name, $prop_fields); array_unshift($prop_fields, 'group_prop_tripalpane', 'group_prop', 'group_prop_table'); // Add the fields to the regions. $region_right = array_merge($region_right, $prop_fields); $fields_with_regions += [ 'group_prop_tripalpane' => 'right', 'group_prop' => 'right', 'group_prop_table' => 'right' ]; } if (!empty($data_sequence_fields)){ _data_sequence_field_group_info($bundle_name, $data_sequence_fields); array_unshift($data_sequence_fields, 'group_sequence_tripalpane', 'group_sequence', 'group_sequence_table'); // Add the fields to the regions. $region_right = array_merge($region_right, $data_sequence_fields); $fields_with_regions += [ 'group_sequence_tripalpane' => 'right', 'group_sequence' => 'right', 'group_sequence_table' => 'right' ]; } if (!empty($all_other_fields)){ foreach ($all_other_fields as $key => $other_field) { // Temporary field names. $temporary_field = array(); $group_field_name = 'gp_'.$other_field['field_name']; $fieldset_field_name = 'ft_'.$other_field['field_name']; // Need to truncate the names because of database field size restrictions, // updating fields here to ensure name consistency. $group_field_name = substr($group_field_name, 0, 27); $fieldset_field_name = substr($fieldset_field_name, 0, 27); // Add random numbers to ensure the field name is unique within the 32 // character limit of the field. $group_field_name = $group_field_name.rand(0, 99999); $fieldset_field_name = $fieldset_field_name.rand(0, 99999); // Build the field group. _additional_fields_field_group_info($bundle_name, $other_field['label'], $group_field_name, $fieldset_field_name, $other_field['field_name']); // Update arrays. array_push($temporary_field, $group_field_name, $fieldset_field_name, $other_field['field_name']); $region_right = array_merge($region_right, $temporary_field); $fields_with_regions += [ $group_field_name => 'right', $fieldset_field_name => 'right' ]; } } // Add blocks to $region_left and build the toc field that is placed within. _ds_fields_info_write($bundle_name); $region_left += [ 'toc' ]; $fields_with_regions += [ 'toc' => 'left' ]; // Build the ds layout. $record = new stdClass; $record->id ='TripalEntity|' . $bundle_name . '|default'; $record->entity_type = 'TripalEntity'; $record->bundle = $bundle_name; $record->view_mode = 'default'; $record->layout = 'tripal_ds_feature'; $settings = array( 'regions' => array( 'left' => $region_left, 'right' => $region_right, ), 'fields' => $fields_with_regions, 'classes' => array(), 'wrappers' => array( 'left' => 'div', 'right' => 'div', ), 'layout_wrapper' => 'div', 'layout_attributes' => '', 'layout_attributes_merge' => 1, 'layout_link_attribute' => '', 'layout_link_custom' => '', 'layout_disable_css' => 0, ); $record->settings = $settings; drupal_write_record('ds_layout_settings', $record); } catch (Exception $e) { watchdog_exception('tripal_ds', $e); return FALSE; } return TRUE; } /** * Implements hook_ds_layout_settings_info(). */ function _ds_layout_pub_settings_info($bundle_name, $instances) { $region_right = array(); $region_left = array(); $properties= array(); $all_fields = array(); $instances_for_field_groups = array(); $disabled_instances = array(); try { // Add Abstract, Citation, DB Cross Reference, Properties. $all_fields['tpub__abstract']= 'right'; $all_fields['tpub__citation']= 'right'; $all_fields['sbo__database_cross_reference']= 'right'; $all_fields['tpub__publication_type']= 'right'; $all_fields['tpub__doi']= 'right'; $all_fields['tpub__publication_date']= 'right'; $all_fields['sio__references']= 'right'; // Iterate through the fields of this bundle. foreach ($instances as $key => $instance) { $instance_name = $instance['field_name']; if($instance_name == 'tpub__abstract' || $instance_name == 'tpub__citation' || $instance_name == 'sbo__database_cross_reference' || $instance_name == 'sio__references'){ array_push($instances_for_field_groups, $instance); // Update the display settings so that the title is hidden. $instance['display']['default']['label'] = 'hidden'; field_update_instance($instance); } elseif($instance_name == 'tpub__publication_type' || $instance_name == 'tpub__doi' || $instance_name == 'tpub__publication_date') { array_push($properties, $instance); } else { array_push($disabled_instances, $instance); } } //Publication fields that are not going in the properties table. foreach ($instances_for_field_groups as $key => $other_field) { // Temporary field names. $temporary_field = array(); $group_field_name = 'gp_'.$other_field['field_name']; $fieldset_field_name = 'ft_'.$other_field['field_name']; // Need to truncate the names because of database field size restrictions, // updating fields here to ensure name consistency. $group_field_name = substr($group_field_name, 0, 27); $fieldset_field_name = substr($fieldset_field_name, 0, 27); // Add randomm numbers to ensure the field name is unique within the 32 // character limit of the field. $group_field_name = $group_field_name.rand(0, 99999); $fieldset_field_name = $fieldset_field_name.rand(0, 99999); // Build the field group. _additional_fields_field_group_info($bundle_name, $other_field['label'], $group_field_name, $fieldset_field_name, $other_field['field_name']); // Update arrays. array_push($temporary_field, $group_field_name, $fieldset_field_name, $other_field['field_name']); $region_right = array_merge($region_right, $temporary_field); $all_fields += [ $group_field_name => 'right', $fieldset_field_name => 'right' ]; } //Properties table fields. if(!empty($properties)){ _publication_prop_field_group_info($bundle_name, $properties); array_unshift($properties, 'group_prop_tripalpane', 'group_prop', 'group_prop_table'); $region_right = array_merge($region_right, $properties); $all_fields+= [ 'group_prop_tripalpane' => 'right', 'group_prop' => 'right', 'group_prop_table' => 'right' ]; } // Add blocks to $region_left and build the toc field that is placed within. _ds_fields_info_write($bundle_name); $region_left += [ 'toc' ]; $all_fields += [ 'toc' => 'left' ]; // Build the ds layout. $record = new stdClass; $record->id ='TripalEntity|' . $bundle_name . '|default'; $record->entity_type = 'TripalEntity'; $record->bundle = $bundle_name; $record->view_mode = 'default'; $record->layout = 'tripal_ds_feature'; $settings = array( 'regions' => array( 'left' => $region_left, 'right' => $region_right, ), 'fields' => $all_fields, 'classes' => array(), 'wrappers' => array( 'left' => 'div', 'right' => 'div', ), 'layout_wrapper' => 'div', 'layout_attributes' => '', 'layout_attributes_merge' => 1, 'layout_link_attribute' => '', 'layout_link_custom' => '', 'layout_disable_css' => 0, ); $record->settings = $settings; drupal_write_record('ds_layout_settings', $record); } catch (Exception $e) { watchdog_exception('tripal_ds', $e); return FALSE; } return TRUE; } /** * Implements hook_ds_fields_info(). */ function tripal_ds_ds_fields_info($entity_type) { $fields = array(); $fields['toc'] = array( 'title' => t('Table of Contents'), 'field_type' => DS_FIELD_TYPE_FUNCTION, 'function' => 'tripal_ds_toc_block', ); return array('TripalEntity' => $fields); } /** * * @param $entity_type * @return */ function tripal_ds_toc_block($entity_type) { $bundle_name = $entity_type['bundle']; $toc = views_embed_view('tripal_content_type_toc', 'block', $bundle_name); return $toc; } function _ds_fields_info_write($bundle_name) { $fields = new stdClass; $fields->id ='TripalEntity|' . $bundle_name . '|default'; $fields->entity_type = 'TripalEntity'; $fields->bundle = $bundle_name; $fields->view_mode = 'default'; $fields->settings = array( 'toc' => array( 'weight' => 0, 'label' => 'hidden', 'format' => 'default', ), ); drupal_write_record('ds_field_settings', $fields); }