tripal/.github/workflows/phpunit-tests.yml

# Run our PHPUnit tests
name: PHPUnit-Tests

# Controls when the action will run.
# Run this workflow every time a new commit is pushed to your repository
on: [push, pull_request]

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  # This workflow contains a single job called "build"
  run-tests:
    # The type of runner that the job will run on
    runs-on: ubuntu-latest
    # Matrix Build for this job.
    strategy:
      matrix:
        php-versions: ['7.1', '7.2']
    # Name the matrix build so we can tell them apart.
    name: PHPUnit Testing of Tripal Core (PHP ${{ matrix.php-versions }})

    # Service containers to run with `run-tests`
    services:
      # Label used to access the service container
      postgres:
        # Docker Hub image
        image: postgres
        env:
          POSTGRES_USER: postgres
          POSTGRES_PASSWORD: dbpass
          POSTGRES_DB: test_db
        # Set health checks to wait until postgres has started
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5
        ports:
          # Maps tcp port 5432 on service container to the host
          - 5432:5432

    # Steps represent a sequence of tasks that will be executed as part of the job
    steps:
      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
      - name: Checkout Repository
        uses: actions/checkout@v2
      # Sets up the PHP environment for PHP 7.2
      - name: Setup PHP
        uses: shivammathur/setup-php@v2
        with:
          php-version: ${{ matrix.php-versions }}
          # Install extensions for PHP-PostgreSQL
          extensions: mbstring, intl, php-pgsql, php-gd, php-xml
          # Increase memory limit to 2G
          ini-values: memory_limit=2G
          # Enable xdebug for coverage reporting
          coverage: xdebug
          # Install composer and phpunit globally.
          tools: composer, phpunit
      # Install Drush 8.x globally
      # NOTE: `drush` is not available without the full path.
      #       I tried adding it to the path but that broke other things.
      - name: Install Drush
        run: |
          composer global require "drush/drush:~8"
          /home/runner/.composer/vendor/bin/drush --version
      # Install Drupal and Drupal module dependencies for Tripal.
      # It also patches Drupal.
      - name: Install Drupal
        env:
          DRUSH: "/home/runner/.composer/vendor/bin/drush"
          DRUPAL_ROOT: "/home/runner/work/drupal"
          POSTGRES_CONNECTION_STRING: 'pgsql://postgres:dbpass@localhost:5432/test_db'
          ACCOUNT_NAME: tripaladmin
          ACCOUNT_PASS: somereallysecurepassword
        run: |
          echo "==> Downloading Drupal"
          cd /home/runner/work
          $DRUSH dl drupal-7 -y
          mv drupal-7* drupal
          echo "==> Installing Drupal"
          cd $DRUPAL_ROOT
          $DRUSH si -y --root=$DRUPAL_ROOT \
                --db-url=$POSTGRES_CONNECTION_STRING \
                --account-name=$ACCOUNT_NAME \
                --account-pass=$ACCOUNT_PASS \
                --site-mail=admin@example.com \
                --site-name=Tripal3
          echo "==> Downloading dependencies"
          $DRUSH dl -y views ctools entity redirect date ds field_group field_group_table
          echo "==> Enabling Dependencies"
          $DRUSH en -y views ctools entity redirect date ds field_group field_group_table
          echo "==> Apply Drupal Patch"
          cd $DRUPAL_ROOT
          wget --no-check-certificate https://drupal.org/files/drupal.pgsql-bytea.27.patch
          patch -p1 < drupal.pgsql-bytea.27.patch
      # Install Tripal, Chado and prepares the Drupal/Chado databases
      # Also patches views.
      - name: Install Tripal
        env:
          DRUSH: "/home/runner/.composer/vendor/bin/drush"
          DRUPAL_ROOT: "/home/runner/work/drupal"
          POSTGRES_CONNECTION_STRING: 'pgsql://postgres:dbpass@localhost:5432/test_db'
          ACCOUNT_NAME: tripaladmin
          ACCOUNT_PASS: somereallysecurepassword
        run: |
          echo "==> Move Tripal into the Drupal modules directory"
          ls /home/runner/work/tripal/tripal
          cp -R /home/runner/work/tripal/tripal $DRUPAL_ROOT/sites/all/modules
          echo "==> Apply Views Patch"
          cd $DRUPAL_ROOT/sites/all/modules/views
          patch -p1 < ../tripal/tripal_chado_views/views-sql-compliant-three-tier-naming-1971160-30.patch
          echo "==> Install Tripal"
          cd $DRUPAL_ROOT
          $DRUSH en -y tripal tripal_chado tripal_chado_views tripal_ws tripal_ds
          echo "==> Install Chado"
          $DRUSH eval "module_load_include('inc', 'tripal_chado', 'includes/tripal_chado.install'); tripal_chado_load_drush_submit('Install Chado v1.3');"
          $DRUSH trp-run-jobs --username=$ACCOUNT_NAME
          echo "==> Prepare Chado"
          $DRUSH eval "module_load_include('inc', 'tripal_chado', 'includes/setup/tripal_chado.setup'); tripal_chado_prepare_drush_submit();"
          $DRUSH trp-run-jobs --username=$ACCOUNT_NAME
      # Runs the PHPUnit tests.
      # https://github.com/mheap/phpunit-github-actions-printer is used
      # to report PHPUnit fails in a meaningful way to github in PRs.
      - name: PHPUnit Tests
        env:
          DRUSH: "/home/runner/.composer/vendor/bin/drush"
          DRUPAL_ROOT: "/home/runner/work/drupal"
          POSTGRES_CONNECTION_STRING: 'pgsql://postgres:dbpass@localhost:5432/test_db'
          ACCOUNT_NAME: tripaladmin
          ACCOUNT_PASS: somereallysecurepassword
        run: |
          cd $DRUPAL_ROOT/sites/all/modules/tripal
          composer require --dev mheap/phpunit-github-actions-printer
          composer update
          cp tests/.travis.env tests/.env
          ./vendor/bin/phpunit --printer mheap\\GithubActionsReporter\\Printer