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empty_landmarks.fasta
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baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
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%!s(int64=4) %!d(string=hai) anos |
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gff_duplicate_ids.gff
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baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
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%!s(int64=4) %!d(string=hai) anos |
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gff_invalidstartend.gff
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da939901ea
Fixed ID regular expression check in GFF loader, added new test for invalid start end values and corresponding test gff file
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%!s(int64=4) %!d(string=hai) anos |
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gff_phase.gff
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9534e04478
GFF unit test data related to phase tests
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%!s(int64=4) %!d(string=hai) anos |
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gff_phase_invalid_character.gff
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9534e04478
GFF unit test data related to phase tests
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%!s(int64=4) %!d(string=hai) anos |
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gff_phase_invalid_number.gff
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9534e04478
GFF unit test data related to phase tests
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%!s(int64=4) %!d(string=hai) anos |
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gff_protein_generation.gff
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baa68f391c
All unit tests now pass, added additional gff files for tests, modified a few functions to correctly do tests, removed dependency on remote files in favour of local files in the data directory for tests.
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%!s(int64=4) %!d(string=hai) anos |
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gff_rightarrow_id.gff
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5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
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%!s(int64=4) %!d(string=hai) anos |
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gff_score.gff
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a396ae070a
Added new test to check on score values - integer, double and negative double
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%!s(int64=4) %!d(string=hai) anos |
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gff_seqid_invalid_character.gff
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bba096323a
Fixed a mix up of validation for ID which should have been for seqid. Removed validation for ID. Altered tests to properly work. Added new test for invalid character in seqid/landmark id
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%!s(int64=4) %!d(string=hai) anos |
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gff_strand.gff
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ea8b4a0b58
GFF fix for strands that are specified as question marks + finish php unit test for strands
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%!s(int64=4) %!d(string=hai) anos |
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gff_strand_invalid.gff
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d25737f6e4
GFF loader modification to throw error if strand character is invalid. Added unit test with an invalid strand gff to confirm it works.
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%!s(int64=4) %!d(string=hai) anos |
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gff_tag_parent_verification.gff
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cbf205fced
Unit test - parent verification
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%!s(int64=4) %!d(string=hai) anos |
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gff_tag_unescaped_character.gff
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2f66751d03
2 validation checks for attribute tag name and attribute tag value plus unit test for tag name that contains a comma
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%!s(int64=4) %!d(string=hai) anos |
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gff_tagvalue_encoded_character.gff
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5260a06a06
This latest commit detects a bug using the testGFFImporterEscapedTagValueWithComma unit test
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%!s(int64=4) %!d(string=hai) anos |
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gff_tagvalue_unescaped_character.gff
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085cf9eabd
Tag value unit test added
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%!s(int64=4) %!d(string=hai) anos |
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gff_unescaped_ids.gff
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5e98649061
2 additional unit tests and corresponding gff files related to ID validations for unescaped whitespaces and IDs beginning with right arrow character
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%!s(int64=4) %!d(string=hai) anos |
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short_scaffold.fasta
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a392175e24
Add unit tests for GFF3Importer Attributes.
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%!s(int64=4) %!d(string=hai) anos |
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simpleGFF.gff
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ea94a3dd70
add test to confirm explicit proteins are still loaded
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%!s(int64=6) %!d(string=hai) anos |
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small_gene.gff
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5f4d0f8b6a
Removed additional gap from small_gene.gff since only one gap variable is allowed per gene. Fixed the test to only look for one gap - test public function testGFFImporterAttributeProperty() {completes correctly
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%!s(int64=4) %!d(string=hai) anos |
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two_prots.fasta
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2fa67aeb94
add tests for fasta importer
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%!s(int64=6) %!d(string=hai) anos |
Risharde Ramnath
cbf205fced
Unit test - parent verification