1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374757677787980818283848586878889909192939495969798991001011021031041051061071081091101111121131141151161171181191201211221231241251261271281291301311321331341351361371381391401411421431441451461471481491501511521531541551561571581591601611621631641651661671681691701711721731741751761771781791801811821831841851861871881891901911921931941951961971981992002012022032042052062072082092102112122132142152162172182192202212222232242252262272282292302312322332342352362372382392402412422432442452462472482492502512522532542552562572582592602612622632642652662672682692702712722732742752762772782792802812822832842852862872882892902912922932942952962972982993003013023033043053063073083093103113123133143153163173183193203213223233243253263273283293303313323333343353363373383393403413423433443453463473483493503513523533543553563573583593603613623633643653663673683693703713723733743753763773783793803813823833843853863873883893903913923933943953963973983994004014024034044054064074084094104114124134144154164174184194204214224234244254264274284294304314324334344354364374384394404414424434444454464474484494504514524534544554564574584594604614624634644654664674684694704714724734744754764774784794804814824834844854864874884894904914924934944954964974984995005015025035045055065075085095105115125135145155165175185195205215225235245255265275285295305315325335345355365375385395405415425435445455465475485495505515525535545555565575585595605615625635645655665675685695705715725735745755765775785795805815825835845855865875885895905915925935945955965975985996006016026036046056066076086096106116126136146156166176186196206216226236246256266276286296306316326336346356366376386396406416426436446456466476486496506516526536546556566576586596606616626636646656666676686696706716726736746756766776786796806816826836846856866876886896906916926936946956966976986997007017027037047057067077087097107117127137147157167177187197207217227237247257267277287297307317327337347357367377387397407417427437447457467477487497507517527537547557567577587597607617627637647657667677687697707717727737747757767777787797807817827837847857867877887897907917927937947957967977987998008018028038048058068078088098108118128138148158168178188198208218228238248258268278288298308318328338348358368378388398408418428438448458468478488498508518528538548558568578588598608618628638648658668678688698708718728738748758768778788798808818828838848858868878888898908918928938948958968978988999009019029039049059069079089099109119129139149159169179189199209219229239249259269279289299309319329339349359369379389399409419429439449459469479489499509519529539549559569579589599609619629639649659669679689699709719729739749759769779789799809819829839849859869879889899909919929939949959969979989991000100110021003100410051006100710081009101010111012101310141015101610171018101910201021102210231024102510261027102810291030103110321033103410351036103710381039104010411042104310441045104610471048104910501051105210531054105510561057105810591060106110621063106410651066106710681069107010711072107310741075107610771078107910801081108210831084108510861087108810891090109110921093109410951096109710981099110011011102110311041105110611071108110911101111111211131114111511161117111811191120112111221123112411251126112711281129113011311132113311341135113611371138113911401141114211431144114511461147114811491150115111521153115411551156115711581159116011611162116311641165116611671168116911701171117211731174117511761177117811791180118111821183118411851186118711881189119011911192119311941195119611971198119912001201120212031204120512061207120812091210121112121213121412151216121712181219122012211222122312241225122612271228122912301231123212331234123512361237123812391240124112421243124412451246124712481249125012511252125312541255125612571258125912601261126212631264126512661267126812691270127112721273127412751276127712781279128012811282128312841285128612871288128912901291129212931294129512961297129812991300130113021303130413051306130713081309131013111312131313141315131613171318131913201321132213231324132513261327132813291330133113321333133413351336133713381339134013411342134313441345134613471348134913501351135213531354135513561357135813591360136113621363136413651366136713681369137013711372137313741375137613771378137913801381138213831384138513861387138813891390139113921393139413951396139713981399140014011402140314041405140614071408140914101411141214131414141514161417141814191420142114221423142414251426142714281429143014311432143314341435143614371438143914401441144214431444144514461447144814491450145114521453145414551456145714581459146014611462146314641465146614671468146914701471147214731474147514761477147814791480148114821483148414851486148714881489149014911492149314941495149614971498149915001501150215031504150515061507150815091510151115121513151415151516151715181519152015211522152315241525152615271528152915301531153215331534153515361537153815391540154115421543154415451546154715481549155015511552155315541555155615571558155915601561156215631564156515661567156815691570157115721573157415751576157715781579158015811582158315841585158615871588158915901591159215931594159515961597159815991600160116021603160416051606160716081609161016111612161316141615161616171618161916201621162216231624162516261627162816291630163116321633163416351636163716381639164016411642164316441645164616471648164916501651165216531654165516561657165816591660166116621663166416651666166716681669167016711672167316741675167616771678167916801681168216831684168516861687168816891690169116921693169416951696169716981699170017011702170317041705170617071708170917101711171217131714171517161717171817191720172117221723172417251726172717281729173017311732173317341735173617371738173917401741174217431744174517461747174817491750175117521753175417551756175717581759176017611762176317641765176617671768176917701771177217731774177517761777177817791780178117821783178417851786178717881789179017911792179317941795179617971798179918001801180218031804180518061807180818091810181118121813181418151816181718181819182018211822182318241825182618271828182918301831183218331834183518361837183818391840184118421843184418451846184718481849185018511852185318541855185618571858185918601861186218631864186518661867186818691870187118721873187418751876187718781879188018811882188318841885188618871888188918901891189218931894189518961897189818991900190119021903190419051906190719081909191019111912191319141915191619171918191919201921192219231924192519261927192819291930193119321933193419351936193719381939194019411942194319441945194619471948194919501951195219531954195519561957195819591960196119621963196419651966196719681969197019711972197319741975197619771978197919801981198219831984198519861987198819891990199119921993199419951996199719981999200020012002200320042005200620072008200920102011201220132014201520162017201820192020202120222023202420252026202720282029203020312032203320342035203620372038203920402041204220432044204520462047204820492050205120522053205420552056205720582059206020612062206320642065206620672068206920702071207220732074207520762077207820792080208120822083208420852086208720882089209020912092209320942095209620972098209921002101210221032104210521062107210821092110211121122113211421152116211721182119212021212122212321242125212621272128212921302131213221332134213521362137213821392140214121422143214421452146214721482149215021512152215321542155215621572158215921602161216221632164216521662167216821692170217121722173217421752176217721782179218021812182218321842185218621872188218921902191219221932194219521962197219821992200220122022203220422052206220722082209221022112212221322142215221622172218221922202221222222232224222522262227222822292230223122322233223422352236223722382239224022412242224322442245224622472248224922502251225222532254225522562257225822592260226122622263226422652266226722682269227022712272227322742275227622772278227922802281228222832284228522862287228822892290229122922293229422952296229722982299230023012302230323042305230623072308230923102311231223132314231523162317231823192320232123222323232423252326232723282329233023312332233323342335233623372338233923402341234223432344234523462347234823492350235123522353235423552356235723582359236023612362236323642365236623672368236923702371237223732374237523762377237823792380238123822383238423852386238723882389239023912392239323942395239623972398239924002401240224032404240524062407240824092410241124122413241424152416241724182419242024212422242324242425242624272428242924302431243224332434243524362437243824392440244124422443244424452446244724482449245024512452245324542455245624572458245924602461246224632464246524662467246824692470247124722473247424752476247724782479248024812482248324842485248624872488248924902491249224932494249524962497249824992500250125022503250425052506250725082509251025112512251325142515251625172518251925202521252225232524252525262527252825292530253125322533253425352536253725382539254025412542254325442545254625472548254925502551255225532554255525562557255825592560256125622563256425652566256725682569257025712572257325742575257625772578257925802581258225832584258525862587258825892590259125922593259425952596259725982599260026012602260326042605260626072608260926102611261226132614261526162617261826192620262126222623262426252626262726282629263026312632263326342635263626372638263926402641264226432644264526462647264826492650265126522653265426552656265726582659266026612662266326642665266626672668266926702671267226732674267526762677267826792680268126822683268426852686268726882689269026912692269326942695269626972698269927002701270227032704270527062707270827092710271127122713271427152716271727182719272027212722272327242725272627272728272927302731273227332734273527362737273827392740274127422743274427452746274727482749275027512752275327542755275627572758275927602761276227632764276527662767276827692770277127722773277427752776277727782779278027812782278327842785278627872788278927902791279227932794279527962797279827992800280128022803280428052806280728082809281028112812281328142815281628172818281928202821282228232824282528262827282828292830283128322833283428352836283728382839284028412842284328442845284628472848284928502851285228532854285528562857285828592860286128622863286428652866286728682869287028712872287328742875287628772878287928802881288228832884288528862887288828892890289128922893289428952896289728982899290029012902290329042905290629072908290929102911291229132914291529162917291829192920292129222923292429252926292729282929293029312932293329342935293629372938293929402941294229432944294529462947294829492950295129522953295429552956295729582959296029612962296329642965296629672968296929702971297229732974297529762977297829792980298129822983298429852986298729882989299029912992299329942995299629972998299930003001300230033004300530063007300830093010301130123013301430153016301730183019302030213022302330243025302630273028302930303031303230333034303530363037303830393040304130423043304430453046304730483049305030513052305330543055305630573058305930603061306230633064306530663067306830693070307130723073307430753076307730783079308030813082308330843085308630873088308930903091309230933094309530963097309830993100310131023103310431053106310731083109311031113112311331143115311631173118311931203121312231233124312531263127312831293130313131323133313431353136313731383139314031413142314331443145314631473148314931503151315231533154315531563157315831593160316131623163316431653166316731683169317031713172317331743175317631773178317931803181318231833184318531863187318831893190319131923193319431953196319731983199320032013202320332043205320632073208320932103211321232133214321532163217321832193220322132223223322432253226322732283229323032313232323332343235323632373238323932403241324232433244324532463247324832493250325132523253325432553256325732583259326032613262326332643265326632673268326932703271327232733274327532763277327832793280328132823283328432853286328732883289329032913292329332943295329632973298329933003301330233033304330533063307330833093310331133123313331433153316331733183319332033213322332333243325332633273328332933303331333233333334333533363337333833393340334133423343334433453346334733483349335033513352335333543355335633573358335933603361336233633364336533663367336833693370337133723373337433753376337733783379338033813382338333843385338633873388338933903391339233933394339533963397339833993400340134023403340434053406340734083409341034113412341334143415341634173418341934203421342234233424342534263427342834293430343134323433343434353436343734383439344034413442344334443445344634473448344934503451345234533454345534563457345834593460346134623463346434653466346734683469347034713472347334743475347634773478347934803481348234833484348534863487348834893490349134923493349434953496349734983499350035013502350335043505350635073508350935103511351235133514351535163517351835193520352135223523352435253526352735283529353035313532353335343535353635373538353935403541354235433544354535463547354835493550355135523553355435553556355735583559356035613562356335643565356635673568356935703571357235733574357535763577357835793580358135823583358435853586358735883589359035913592359335943595359635973598359936003601360236033604360536063607360836093610361136123613361436153616361736183619362036213622362336243625362636273628362936303631363236333634363536363637363836393640364136423643364436453646364736483649365036513652365336543655365636573658365936603661366236633664366536663667366836693670367136723673367436753676367736783679368036813682368336843685368636873688368936903691369236933694369536963697369836993700370137023703370437053706370737083709371037113712371337143715371637173718371937203721372237233724372537263727372837293730373137323733373437353736373737383739374037413742374337443745374637473748374937503751375237533754375537563757375837593760376137623763376437653766376737683769377037713772377337743775377637773778377937803781378237833784378537863787378837893790379137923793379437953796379737983799380038013802380338043805380638073808380938103811381238133814381538163817381838193820382138223823382438253826382738283829383038313832383338343835383638373838383938403841384238433844384538463847384838493850385138523853385438553856385738583859386038613862386338643865386638673868386938703871387238733874387538763877387838793880388138823883388438853886388738883889389038913892389338943895389638973898389939003901390239033904390539063907390839093910391139123913391439153916391739183919392039213922392339243925392639273928392939303931393239333934393539363937393839393940394139423943394439453946394739483949395039513952395339543955395639573958395939603961396239633964396539663967396839693970397139723973397439753976397739783979398039813982398339843985398639873988398939903991399239933994399539963997399839994000400140024003400440054006400740084009401040114012401340144015401640174018401940204021402240234024402540264027402840294030403140324033403440354036403740384039404040414042404340444045404640474048404940504051405240534054405540564057405840594060406140624063406440654066406740684069407040714072407340744075407640774078407940804081408240834084408540864087408840894090409140924093409440954096409740984099410041014102410341044105410641074108410941104111411241134114411541164117411841194120412141224123412441254126412741284129413041314132413341344135413641374138413941404141414241434144414541464147414841494150415141524153415441554156415741584159416041614162416341644165416641674168416941704171417241734174417541764177417841794180418141824183418441854186418741884189419041914192419341944195419641974198419942004201420242034204420542064207420842094210421142124213421442154216421742184219422042214222422342244225422642274228422942304231423242334234423542364237423842394240424142424243424442454246424742484249425042514252425342544255425642574258425942604261426242634264426542664267426842694270427142724273427442754276427742784279428042814282428342844285428642874288428942904291429242934294429542964297429842994300430143024303430443054306430743084309431043114312431343144315431643174318431943204321432243234324432543264327432843294330433143324333433443354336433743384339434043414342434343444345434643474348434943504351435243534354435543564357435843594360436143624363436443654366436743684369437043714372437343744375437643774378437943804381438243834384438543864387438843894390439143924393439443954396439743984399440044014402440344044405440644074408440944104411441244134414441544164417441844194420442144224423442444254426442744284429443044314432443344344435443644374438443944404441444244434444444544464447444844494450445144524453445444554456445744584459446044614462446344644465446644674468446944704471447244734474447544764477447844794480448144824483448444854486448744884489449044914492449344944495449644974498449945004501450245034504450545064507450845094510451145124513451445154516451745184519452045214522452345244525452645274528452945304531453245334534453545364537453845394540454145424543454445454546454745484549455045514552455345544555455645574558455945604561456245634564456545664567456845694570457145724573457445754576457745784579458045814582458345844585458645874588458945904591459245934594459545964597459845994600460146024603460446054606460746084609461046114612461346144615461646174618461946204621462246234624462546264627462846294630463146324633463446354636463746384639464046414642464346444645464646474648464946504651465246534654465546564657465846594660466146624663466446654666466746684669467046714672467346744675467646774678467946804681468246834684468546864687468846894690469146924693469446954696469746984699470047014702470347044705470647074708470947104711471247134714471547164717471847194720472147224723472447254726472747284729473047314732473347344735473647374738473947404741474247434744474547464747474847494750475147524753475447554756475747584759476047614762476347644765476647674768476947704771477247734774477547764777477847794780478147824783478447854786478747884789479047914792479347944795479647974798479948004801480248034804480548064807480848094810481148124813481448154816481748184819482048214822482348244825482648274828482948304831483248334834483548364837483848394840484148424843484448454846484748484849485048514852485348544855485648574858485948604861486248634864486548664867486848694870487148724873487448754876487748784879488048814882488348844885488648874888488948904891489248934894489548964897489848994900490149024903490449054906490749084909491049114912491349144915491649174918491949204921492249234924492549264927492849294930493149324933493449354936493749384939494049414942494349444945494649474948494949504951495249534954495549564957495849594960496149624963496449654966496749684969497049714972497349744975497649774978497949804981498249834984498549864987498849894990499149924993499449954996499749984999500050015002500350045005500650075008500950105011501250135014501550165017501850195020502150225023502450255026502750285029503050315032503350345035503650375038503950405041504250435044504550465047504850495050505150525053505450555056505750585059506050615062506350645065506650675068506950705071507250735074507550765077507850795080508150825083508450855086508750885089509050915092509350945095509650975098509951005101510251035104510551065107510851095110511151125113511451155116511751185119512051215122512351245125512651275128512951305131513251335134513551365137513851395140514151425143514451455146514751485149515051515152515351545155515651575158515951605161516251635164516551665167516851695170517151725173517451755176517751785179518051815182518351845185518651875188518951905191519251935194519551965197519851995200520152025203520452055206520752085209521052115212521352145215521652175218521952205221522252235224522552265227522852295230523152325233523452355236523752385239524052415242524352445245524652475248524952505251525252535254525552565257525852595260526152625263526452655266526752685269527052715272527352745275527652775278527952805281528252835284528552865287528852895290529152925293529452955296529752985299530053015302530353045305530653075308530953105311531253135314531553165317531853195320532153225323532453255326532753285329533053315332533353345335533653375338533953405341534253435344534553465347534853495350535153525353535453555356535753585359536053615362536353645365536653675368536953705371537253735374537553765377537853795380538153825383538453855386538753885389539053915392539353945395539653975398539954005401540254035404540554065407540854095410541154125413541454155416541754185419542054215422542354245425542654275428542954305431543254335434543554365437543854395440544154425443544454455446544754485449545054515452545354545455545654575458545954605461546254635464546554665467546854695470547154725473547454755476547754785479548054815482548354845485548654875488548954905491549254935494549554965497549854995500550155025503550455055506550755085509551055115512551355145515551655175518551955205521552255235524552555265527552855295530553155325533553455355536553755385539554055415542554355445545554655475548554955505551555255535554555555565557555855595560556155625563556455655566556755685569557055715572557355745575557655775578557955805581558255835584558555865587558855895590559155925593559455955596559755985599560056015602560356045605560656075608560956105611561256135614561556165617561856195620562156225623562456255626562756285629563056315632563356345635563656375638563956405641564256435644564556465647564856495650565156525653565456555656565756585659566056615662566356645665566656675668566956705671567256735674567556765677567856795680568156825683568456855686568756885689569056915692569356945695569656975698569957005701570257035704570557065707570857095710571157125713571457155716571757185719572057215722572357245725572657275728572957305731573257335734573557365737573857395740574157425743574457455746574757485749575057515752575357545755575657575758575957605761576257635764576557665767576857695770577157725773577457755776577757785779578057815782578357845785578657875788578957905791579257935794579557965797579857995800580158025803580458055806580758085809581058115812581358145815581658175818581958205821582258235824582558265827582858295830583158325833583458355836583758385839584058415842584358445845584658475848584958505851585258535854585558565857585858595860586158625863586458655866586758685869587058715872587358745875587658775878587958805881588258835884588558865887588858895890589158925893589458955896589758985899590059015902590359045905590659075908590959105911591259135914591559165917591859195920592159225923592459255926592759285929593059315932593359345935593659375938593959405941594259435944594559465947594859495950595159525953595459555956595759585959596059615962596359645965596659675968596959705971597259735974597559765977597859795980598159825983598459855986598759885989599059915992599359945995599659975998599960006001600260036004600560066007600860096010601160126013601460156016601760186019602060216022602360246025602660276028602960306031603260336034603560366037603860396040604160426043604460456046604760486049605060516052605360546055605660576058605960606061606260636064606560666067606860696070607160726073607460756076607760786079608060816082608360846085608660876088608960906091609260936094609560966097609860996100610161026103610461056106610761086109611061116112611361146115611661176118611961206121612261236124612561266127612861296130613161326133613461356136613761386139614061416142614361446145614661476148614961506151615261536154615561566157615861596160616161626163616461656166616761686169617061716172617361746175617661776178617961806181618261836184618561866187618861896190619161926193619461956196619761986199620062016202620362046205620662076208620962106211621262136214621562166217621862196220622162226223622462256226622762286229623062316232623362346235623662376238623962406241624262436244624562466247624862496250625162526253625462556256625762586259626062616262626362646265626662676268626962706271627262736274627562766277627862796280628162826283628462856286628762886289629062916292629362946295629662976298629963006301630263036304630563066307630863096310631163126313631463156316631763186319632063216322632363246325632663276328632963306331633263336334633563366337633863396340634163426343634463456346634763486349635063516352635363546355635663576358635963606361636263636364636563666367636863696370637163726373637463756376637763786379638063816382638363846385638663876388638963906391639263936394639563966397639863996400640164026403640464056406640764086409641064116412641364146415641664176418641964206421642264236424642564266427642864296430643164326433643464356436643764386439644064416442644364446445644664476448644964506451645264536454645564566457645864596460646164626463646464656466646764686469647064716472647364746475647664776478647964806481648264836484648564866487648864896490649164926493649464956496649764986499650065016502650365046505650665076508650965106511651265136514651565166517651865196520652165226523652465256526652765286529653065316532653365346535653665376538653965406541654265436544654565466547654865496550655165526553655465556556655765586559656065616562656365646565656665676568656965706571657265736574657565766577657865796580658165826583658465856586658765886589659065916592659365946595659665976598659966006601660266036604660566066607660866096610661166126613661466156616661766186619662066216622662366246625662666276628662966306631663266336634663566366637663866396640664166426643664466456646664766486649665066516652665366546655665666576658665966606661666266636664666566666667666866696670667166726673667466756676667766786679668066816682668366846685668666876688668966906691669266936694669566966697669866996700670167026703670467056706670767086709671067116712671367146715671667176718671967206721672267236724672567266727672867296730673167326733673467356736673767386739674067416742674367446745674667476748674967506751675267536754675567566757675867596760676167626763676467656766676767686769677067716772677367746775677667776778677967806781678267836784678567866787678867896790679167926793679467956796679767986799680068016802680368046805680668076808680968106811681268136814681568166817681868196820682168226823682468256826682768286829683068316832683368346835683668376838683968406841684268436844684568466847684868496850685168526853685468556856685768586859686068616862686368646865686668676868686968706871687268736874687568766877687868796880688168826883688468856886688768886889689068916892689368946895689668976898689969006901690269036904690569066907690869096910691169126913691469156916691769186919692069216922692369246925692669276928692969306931693269336934693569366937693869396940694169426943694469456946694769486949695069516952695369546955695669576958695969606961696269636964696569666967696869696970697169726973697469756976697769786979698069816982698369846985698669876988698969906991699269936994699569966997699869997000700170027003700470057006700770087009701070117012701370147015701670177018701970207021702270237024702570267027702870297030703170327033703470357036703770387039704070417042704370447045704670477048704970507051705270537054705570567057705870597060706170627063706470657066706770687069707070717072707370747075707670777078707970807081708270837084708570867087708870897090709170927093709470957096709770987099710071017102710371047105710671077108710971107111711271137114711571167117711871197120712171227123712471257126712771287129713071317132713371347135713671377138713971407141714271437144714571467147714871497150715171527153715471557156715771587159716071617162716371647165716671677168716971707171717271737174717571767177717871797180718171827183718471857186718771887189719071917192719371947195719671977198719972007201720272037204720572067207720872097210721172127213721472157216721772187219722072217222722372247225722672277228722972307231723272337234723572367237723872397240724172427243724472457246724772487249725072517252725372547255725672577258725972607261726272637264726572667267726872697270727172727273727472757276727772787279728072817282728372847285728672877288728972907291729272937294729572967297729872997300730173027303730473057306730773087309731073117312731373147315731673177318731973207321732273237324732573267327732873297330733173327333733473357336733773387339734073417342734373447345734673477348734973507351735273537354735573567357735873597360736173627363736473657366736773687369737073717372737373747375737673777378737973807381738273837384738573867387738873897390739173927393739473957396739773987399740074017402740374047405740674077408740974107411741274137414741574167417741874197420742174227423742474257426742774287429743074317432743374347435743674377438743974407441744274437444744574467447744874497450745174527453745474557456745774587459746074617462746374647465746674677468746974707471747274737474747574767477747874797480748174827483748474857486748774887489749074917492749374947495749674977498749975007501750275037504750575067507750875097510751175127513751475157516751775187519752075217522752375247525752675277528752975307531753275337534753575367537753875397540754175427543754475457546754775487549755075517552755375547555755675577558755975607561756275637564756575667567756875697570757175727573757475757576757775787579758075817582758375847585758675877588758975907591759275937594759575967597759875997600760176027603760476057606760776087609761076117612761376147615761676177618761976207621762276237624762576267627762876297630763176327633763476357636763776387639764076417642764376447645764676477648764976507651765276537654765576567657765876597660766176627663766476657666766776687669767076717672767376747675767676777678767976807681768276837684768576867687768876897690769176927693769476957696769776987699770077017702770377047705770677077708770977107711771277137714771577167717771877197720772177227723772477257726772777287729773077317732773377347735773677377738773977407741774277437744774577467747774877497750775177527753775477557756775777587759776077617762776377647765776677677768776977707771777277737774777577767777777877797780778177827783778477857786778777887789779077917792779377947795779677977798779978007801780278037804780578067807780878097810781178127813781478157816781778187819782078217822782378247825782678277828782978307831783278337834783578367837783878397840784178427843784478457846784778487849785078517852785378547855785678577858785978607861786278637864786578667867786878697870787178727873787478757876787778787879788078817882788378847885788678877888788978907891789278937894789578967897789878997900790179027903790479057906790779087909791079117912791379147915791679177918791979207921792279237924792579267927792879297930793179327933793479357936793779387939794079417942794379447945794679477948794979507951795279537954795579567957795879597960796179627963796479657966796779687969797079717972797379747975797679777978797979807981798279837984798579867987798879897990799179927993799479957996799779987999800080018002800380048005800680078008800980108011801280138014801580168017801880198020802180228023802480258026802780288029803080318032803380348035803680378038803980408041804280438044804580468047804880498050805180528053805480558056805780588059806080618062806380648065806680678068806980708071807280738074807580768077807880798080808180828083808480858086808780888089809080918092809380948095809680978098809981008101810281038104810581068107810881098110811181128113811481158116811781188119812081218122812381248125812681278128812981308131813281338134813581368137813881398140814181428143814481458146814781488149815081518152815381548155815681578158815981608161816281638164816581668167816881698170817181728173817481758176817781788179818081818182818381848185818681878188818981908191819281938194819581968197819881998200820182028203820482058206820782088209821082118212821382148215821682178218821982208221822282238224822582268227822882298230823182328233823482358236823782388239824082418242824382448245824682478248824982508251825282538254825582568257825882598260826182628263826482658266826782688269827082718272827382748275827682778278827982808281828282838284828582868287828882898290829182928293829482958296829782988299830083018302830383048305830683078308830983108311831283138314831583168317831883198320832183228323832483258326832783288329833083318332833383348335833683378338833983408341834283438344834583468347834883498350835183528353835483558356835783588359836083618362836383648365836683678368836983708371837283738374837583768377837883798380838183828383838483858386838783888389839083918392839383948395839683978398839984008401840284038404840584068407840884098410841184128413841484158416841784188419842084218422842384248425842684278428842984308431843284338434843584368437843884398440844184428443844484458446844784488449845084518452845384548455845684578458845984608461846284638464846584668467846884698470847184728473847484758476847784788479848084818482848384848485848684878488848984908491849284938494849584968497849884998500850185028503850485058506850785088509851085118512851385148515851685178518851985208521852285238524852585268527852885298530853185328533853485358536853785388539854085418542854385448545854685478548854985508551855285538554855585568557855885598560856185628563856485658566856785688569857085718572857385748575857685778578857985808581858285838584858585868587858885898590859185928593859485958596859785988599860086018602860386048605860686078608860986108611861286138614861586168617861886198620862186228623862486258626862786288629863086318632863386348635863686378638863986408641864286438644864586468647864886498650865186528653865486558656865786588659866086618662866386648665866686678668866986708671867286738674867586768677867886798680868186828683868486858686868786888689869086918692869386948695869686978698869987008701870287038704870587068707870887098710871187128713871487158716871787188719872087218722872387248725872687278728872987308731873287338734873587368737873887398740874187428743874487458746874787488749875087518752875387548755875687578758875987608761876287638764876587668767876887698770877187728773877487758776877787788779878087818782878387848785878687878788878987908791879287938794879587968797879887998800880188028803880488058806880788088809881088118812881388148815881688178818881988208821882288238824882588268827882888298830883188328833883488358836883788388839884088418842884388448845884688478848884988508851885288538854885588568857885888598860886188628863886488658866886788688869887088718872887388748875887688778878887988808881888288838884888588868887888888898890889188928893889488958896889788988899890089018902890389048905890689078908890989108911891289138914891589168917891889198920892189228923892489258926892789288929893089318932893389348935893689378938893989408941894289438944894589468947894889498950895189528953895489558956895789588959896089618962896389648965896689678968896989708971897289738974897589768977897889798980898189828983898489858986898789888989899089918992899389948995899689978998899990009001900290039004900590069007900890099010901190129013901490159016901790189019902090219022902390249025902690279028902990309031903290339034903590369037903890399040904190429043904490459046904790489049905090519052905390549055905690579058905990609061906290639064906590669067906890699070907190729073907490759076907790789079908090819082908390849085908690879088908990909091909290939094909590969097909890999100910191029103910491059106910791089109911091119112911391149115911691179118911991209121912291239124912591269127912891299130913191329133913491359136913791389139914091419142914391449145914691479148914991509151915291539154915591569157915891599160916191629163916491659166916791689169917091719172917391749175917691779178917991809181918291839184918591869187918891899190919191929193919491959196919791989199920092019202920392049205920692079208920992109211921292139214921592169217921892199220922192229223922492259226922792289229923092319232923392349235923692379238923992409241924292439244924592469247924892499250925192529253925492559256925792589259926092619262926392649265926692679268926992709271927292739274927592769277927892799280928192829283928492859286928792889289929092919292929392949295929692979298929993009301930293039304930593069307930893099310931193129313931493159316931793189319932093219322932393249325932693279328932993309331933293339334933593369337933893399340934193429343934493459346934793489349935093519352935393549355935693579358935993609361936293639364936593669367936893699370937193729373937493759376937793789379938093819382938393849385938693879388938993909391939293939394939593969397939893999400940194029403940494059406940794089409941094119412941394149415941694179418941994209421942294239424942594269427942894299430943194329433943494359436943794389439944094419442944394449445944694479448944994509451945294539454945594569457945894599460946194629463946494659466946794689469947094719472947394749475947694779478947994809481948294839484948594869487948894899490949194929493949494959496949794989499950095019502950395049505950695079508950995109511951295139514951595169517951895199520952195229523952495259526952795289529953095319532953395349535953695379538953995409541954295439544954595469547954895499550955195529553955495559556955795589559956095619562956395649565956695679568956995709571957295739574957595769577957895799580958195829583958495859586958795889589959095919592959395949595959695979598959996009601960296039604960596069607960896099610961196129613961496159616961796189619962096219622962396249625962696279628962996309631963296339634963596369637963896399640964196429643964496459646964796489649965096519652965396549655965696579658965996609661966296639664966596669667966896699670967196729673967496759676967796789679968096819682968396849685968696879688968996909691969296939694969596969697969896999700970197029703970497059706970797089709971097119712971397149715971697179718971997209721972297239724972597269727972897299730973197329733973497359736973797389739974097419742974397449745974697479748974997509751975297539754975597569757975897599760976197629763976497659766976797689769977097719772977397749775977697779778977997809781978297839784978597869787978897899790979197929793979497959796979797989799980098019802980398049805980698079808980998109811981298139814981598169817981898199820982198229823982498259826982798289829983098319832983398349835983698379838983998409841984298439844984598469847984898499850985198529853985498559856985798589859986098619862986398649865986698679868986998709871987298739874987598769877987898799880988198829883988498859886988798889889989098919892989398949895989698979898989999009901990299039904990599069907990899099910991199129913991499159916991799189919992099219922992399249925992699279928992999309931993299339934993599369937993899399940994199429943994499459946994799489949995099519952995399549955995699579958995999609961996299639964996599669967996899699970997199729973997499759976997799789979998099819982998399849985998699879988998999909991999299939994999599969997999899991000010001100021000310004100051000610007100081000910010100111001210013100141001510016100171001810019100201002110022100231002410025100261002710028100291003010031100321003310034100351003610037100381003910040100411004210043100441004510046100471004810049100501005110052100531005410055100561005710058100591006010061100621006310064100651006610067100681006910070100711007210073100741007510076100771007810079100801008110082100831008410085100861008710088100891009010091100921009310094100951009610097100981009910100101011010210103101041010510106101071010810109101101011110112101131011410115101161011710118101191012010121101221012310124101251012610127101281012910130101311013210133101341013510136101371013810139101401014110142101431014410145101461014710148101491015010151101521015310154101551015610157101581015910160101611016210163101641016510166101671016810169101701017110172101731017410175101761017710178101791018010181101821018310184101851018610187101881018910190101911019210193101941019510196101971019810199102001020110202102031020410205102061020710208102091021010211102121021310214102151021610217102181021910220102211022210223102241022510226102271022810229102301023110232102331023410235102361023710238102391024010241102421024310244102451024610247102481024910250102511025210253102541025510256102571025810259102601026110262102631026410265102661026710268102691027010271102721027310274102751027610277102781027910280102811028210283102841028510286102871028810289102901029110292102931029410295102961029710298102991030010301103021030310304103051030610307103081030910310103111031210313103141031510316103171031810319103201032110322103231032410325103261032710328103291033010331103321033310334103351033610337103381033910340103411034210343103441034510346103471034810349103501035110352103531035410355103561035710358103591036010361103621036310364103651036610367103681036910370103711037210373103741037510376103771037810379103801038110382103831038410385103861038710388103891039010391103921039310394103951039610397103981039910400104011040210403104041040510406104071040810409104101041110412104131041410415104161041710418104191042010421104221042310424104251042610427104281042910430104311043210433104341043510436104371043810439104401044110442104431044410445104461044710448104491045010451104521045310454104551045610457104581045910460104611046210463104641046510466104671046810469104701047110472104731047410475104761047710478104791048010481104821048310484104851048610487104881048910490104911049210493104941049510496104971049810499105001050110502105031050410505105061050710508105091051010511105121051310514105151051610517105181051910520105211052210523105241052510526105271052810529105301053110532105331053410535105361053710538105391054010541105421054310544105451054610547105481054910550105511055210553105541055510556105571055810559105601056110562105631056410565105661056710568105691057010571105721057310574105751057610577105781057910580105811058210583105841058510586105871058810589105901059110592105931059410595105961059710598105991060010601106021060310604106051060610607106081060910610106111061210613106141061510616106171061810619106201062110622106231062410625106261062710628106291063010631106321063310634106351063610637106381063910640106411064210643106441064510646106471064810649106501065110652106531065410655106561065710658106591066010661106621066310664106651066610667106681066910670106711067210673106741067510676106771067810679106801068110682106831068410685106861068710688106891069010691106921069310694106951069610697106981069910700107011070210703107041070510706107071070810709107101071110712107131071410715107161071710718107191072010721107221072310724107251072610727107281072910730107311073210733107341073510736107371073810739107401074110742107431074410745107461074710748107491075010751107521075310754107551075610757107581075910760107611076210763107641076510766107671076810769107701077110772107731077410775107761077710778107791078010781107821078310784107851078610787107881078910790107911079210793107941079510796107971079810799108001080110802108031080410805108061080710808108091081010811108121081310814108151081610817108181081910820108211082210823108241082510826108271082810829108301083110832108331083410835108361083710838108391084010841108421084310844108451084610847108481084910850108511085210853108541085510856108571085810859108601086110862108631086410865108661086710868108691087010871108721087310874108751087610877108781087910880108811088210883108841088510886108871088810889108901089110892108931089410895108961089710898108991090010901109021090310904109051090610907109081090910910109111091210913109141091510916109171091810919109201092110922109231092410925109261092710928109291093010931109321093310934109351093610937109381093910940109411094210943109441094510946109471094810949109501095110952109531095410955109561095710958109591096010961109621096310964109651096610967109681096910970109711097210973109741097510976109771097810979109801098110982109831098410985109861098710988109891099010991109921099310994109951099610997109981099911000110011100211003110041100511006110071100811009110101101111012110131101411015110161101711018110191102011021110221102311024110251102611027110281102911030110311103211033110341103511036110371103811039110401104111042110431104411045110461104711048110491105011051110521105311054110551105611057110581105911060110611106211063110641106511066110671106811069110701107111072110731107411075110761107711078110791108011081110821108311084110851108611087110881108911090110911109211093110941109511096110971109811099111001110111102111031110411105111061110711108111091111011111111121111311114111151111611117111181111911120111211112211123111241112511126111271112811129111301113111132111331113411135111361113711138111391114011141111421114311144111451114611147111481114911150111511115211153111541115511156111571115811159111601116111162 |
- <?php
- /**
- * @file
- * Describes the chado tables in version 1.11
- */
- /**
- * @defgroup tripal_schema_v1_11_api Chado v1.11 Schema
- * @ingroup tripal_chado_schema_api
- * @{
- * Provides an application programming interface (API) for describing Chado
- * tables. This API consists of a set of functions, one for each table in
- * Chado. Each function simply returns a Drupal style array that defines the
- * table.
- *
- * Because Drupal 6 does not handle foreign key (FK) relationships, which are
- * needed to for Tripal Views, they have been added to the schema
- * defintitions below.
- *
- * The functions provided in this documentation should not be called as is, but
- * if you need the Drupal-style array definition for any table, use the
- * following function call:
- *
- * $table_desc = chado_get_schema($table)
- *
- * where the variable $table contains the name of the table you want to
- * retireve. The chado_get_schema function determines the appropriate version
- * of Chado and uses the Drupal hook infrastructure to call the appropriate
- * hook function to retrieve the table schema.
- *
- * If you need to augment these schema definitions within your own module, you
- * need to implement the hook_chado_schema_v1_11_[table name]() hook where
- * [table name] is the name of the chado table whose schema definition you
- * want to augment.
- * @}
- */
- /**
- * Implements hook_chado_schema_v1_11_acquisition()
- * Purpose: To describe the structure of 'acquisition' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'acquisition' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_acquisition() {
- $description = [
- 'table' => 'acquisition',
- 'fields' => [
- 'acquisition_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'protocol_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'channel_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'acquisitiondate' => [
- 'type' => 'datetime',
- 'not NULL' => '',
- 'default' => 'ow(',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'uri' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'acquisition_id',
- ],
- 'unique keys' => [
- 'acquisition_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'acquisition_idx1' => [
- 0 => 'assay_id',
- ],
- 'acquisition_idx2' => [
- 0 => 'protocol_id',
- ],
- 'acquisition_idx3' => [
- 0 => 'channel_id',
- ],
- ],
- 'foreign keys' => [
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- 'channel' => [
- 'table' => 'channel',
- 'columns' => [
- 'channel_id' => 'channel_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_acquisition_relationship()
- * Purpose: To describe the structure of 'acquisition_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'acquisition_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_acquisition_relationship() {
- $description = [
- 'table' => 'acquisition_relationship',
- 'fields' => [
- 'acquisition_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'acquisition_relationship_id',
- ],
- 'unique keys' => [
- 'acquisition_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'acquisition_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'acquisition_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'acquisition_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'acquisition' => [
- 'table' => 'acquisition',
- 'columns' => [
- 'subject_id' => 'acquisition_id',
- 'object_id' => 'acquisition_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_acquisitionprop()
- * Purpose: To describe the structure of 'acquisitionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'acquisitionprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_acquisitionprop() {
- $description = [
- 'table' => 'acquisitionprop',
- 'fields' => [
- 'acquisitionprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'acquisition_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'acquisitionprop_id',
- ],
- 'unique keys' => [
- 'acquisitionprop_c1' => [
- 0 => 'acquisition_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'acquisitionprop_idx1' => [
- 0 => 'acquisition_id',
- ],
- 'acquisitionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'acquisition' => [
- 'table' => 'acquisition',
- 'columns' => [
- 'acquisition_id' => 'acquisition_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_analysis()
- * Purpose: To describe the structure of 'analysis' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'analysis' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_analysis() {
- $description = [
- 'referring_tables' => [
- 0 => 'analysisfeature',
- 1 => 'analysisprop',
- 2 => 'phylotree',
- 3 => 'quantification',
- ],
- 'table' => 'analysis',
- 'fields' => [
- 'analysis_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'program' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'programversion' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'algorithm' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'sourcename' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'sourceversion' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'sourceuri' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'timeexecuted' => [
- 'type' => 'datetime',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- ],
- 'primary key' => [
- 0 => 'analysis_id',
- ],
- 'unique keys' => [
- 'analysis_c1' => [
- 0 => 'program',
- 1 => 'programversion',
- 2 => 'sourcename',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_analysisprop()
- *
- * Purpose: To describe the structure of 'analysisprop' to tripal. This table
- * doesn't exist in Chado v1.1 (it does in v1.2), so we need to describe it
- * here
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'analysisprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_analysisprop() {
- $description = [
- 'table' => 'analysisprop',
- 'fields' => [
- 'analysisprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'analysis_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'analysisprop_id',
- ],
- 'unique keys' => [
- 'analysisprop_c1' => [
- 0 => 'analysis_id',
- 1 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'analysisprop_idx1' => [
- 0 => 'analysis_id',
- ],
- 'analysisprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_analysisfeature()
- * Purpose: To describe the structure of 'analysisfeature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'analysisfeature' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_analysisfeature() {
- $description = [
- 'table' => 'analysisfeature',
- 'fields' => [
- 'analysisfeature_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'analysis_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rawscore' => [
- 'type' => 'float',
- 'size' => 'big',
- 'not NULL' => '',
- ],
- 'normscore' => [
- 'type' => 'float',
- 'size' => 'big',
- 'not NULL' => '',
- ],
- 'significance' => [
- 'type' => 'float',
- 'size' => 'big',
- 'not NULL' => '',
- ],
- 'identity' => [
- 'type' => 'float',
- 'size' => 'big',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'analysisfeature_id',
- ],
- 'unique keys' => [
- 'analysisfeature_c1' => [
- 0 => 'feature_id',
- 1 => 'analysis_id',
- ],
- ],
- 'indexes' => [
- 'analysisfeature_idx1' => [
- 0 => 'feature_id',
- ],
- 'analysisfeature_idx2' => [
- 0 => 'analysis_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_arraydesign()
- * Purpose: To describe the structure of 'arraydesign' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'arraydesign' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_arraydesign() {
- $description = [
- 'table' => 'arraydesign',
- 'fields' => [
- 'arraydesign_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'manufacturer_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'platformtype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'substratetype_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'protocol_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'version' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'array_dimensions' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'element_dimensions' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'num_of_elements' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'num_array_columns' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'num_array_rows' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'num_grid_columns' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'num_grid_rows' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'num_sub_columns' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'num_sub_rows' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'arraydesign_id',
- ],
- 'unique keys' => [
- 'arraydesign_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'arraydesign_idx1' => [
- 0 => 'manufacturer_id',
- ],
- 'arraydesign_idx2' => [
- 0 => 'platformtype_id',
- ],
- 'arraydesign_idx3' => [
- 0 => 'substratetype_id',
- ],
- 'arraydesign_idx4' => [
- 0 => 'protocol_id',
- ],
- 'arraydesign_idx5' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'platformtype_id' => 'cvterm_id',
- 'substratetype_id' => 'cvterm_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'manufacturer_id' => 'contact_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_arraydesignprop()
- * Purpose: To describe the structure of 'arraydesignprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'arraydesignprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_arraydesignprop() {
- $description = [
- 'table' => 'arraydesignprop',
- 'fields' => [
- 'arraydesignprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'arraydesign_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'arraydesignprop_id',
- ],
- 'unique keys' => [
- 'arraydesignprop_c1' => [
- 0 => 'arraydesign_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'arraydesignprop_idx1' => [
- 0 => 'arraydesign_id',
- ],
- 'arraydesignprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'arraydesign' => [
- 'table' => 'arraydesign',
- 'columns' => [
- 'arraydesign_id' => 'arraydesign_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_assay()
- * Purpose: To describe the structure of 'assay' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assay' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_assay() {
- $description = [
- 'table' => 'assay',
- 'fields' => [
- 'assay_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'arraydesign_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'protocol_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'assaydate' => [
- 'type' => 'datetime',
- 'not NULL' => '',
- 'default' => 'ow(',
- ],
- 'arrayidentifier' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'arraybatchidentifier' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'operator_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'assay_id',
- ],
- 'unique keys' => [
- 'assay_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'assay_idx1' => [
- 0 => 'arraydesign_id',
- ],
- 'assay_idx2' => [
- 0 => 'protocol_id',
- ],
- 'assay_idx3' => [
- 0 => 'operator_id',
- ],
- 'assay_idx4' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'operator_id' => 'contact_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- 'arraydesign' => [
- 'table' => 'arraydesign',
- 'columns' => [
- 'arraydesign_id' => 'arraydesign_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_assay_biomaterial()
- * Purpose: To describe the structure of 'assay_biomaterial' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assay_biomaterial' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_assay_biomaterial() {
- $description = [
- 'table' => 'assay_biomaterial',
- 'fields' => [
- 'assay_biomaterial_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'biomaterial_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'channel_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'assay_biomaterial_id',
- ],
- 'unique keys' => [
- 'assay_biomaterial_c1' => [
- 0 => 'assay_id',
- 1 => 'biomaterial_id',
- 2 => 'channel_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'assay_biomaterial_idx1' => [
- 0 => 'assay_id',
- ],
- 'assay_biomaterial_idx2' => [
- 0 => 'biomaterial_id',
- ],
- 'assay_biomaterial_idx3' => [
- 0 => 'channel_id',
- ],
- ],
- 'foreign keys' => [
- 'channel' => [
- 'table' => 'channel',
- 'columns' => [
- 'channel_id' => 'channel_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_assay_project()
- * Purpose: To describe the structure of 'assay_project' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assay_project' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_assay_project() {
- $description = [
- 'table' => 'assay_project',
- 'fields' => [
- 'assay_project_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'project_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'assay_project_id',
- ],
- 'unique keys' => [
- 'assay_project_c1' => [
- 0 => 'assay_id',
- 1 => 'project_id',
- ],
- ],
- 'indexes' => [
- 'assay_project_idx1' => [
- 0 => 'assay_id',
- ],
- 'assay_project_idx2' => [
- 0 => 'project_id',
- ],
- ],
- 'foreign keys' => [
- 'project' => [
- 'table' => 'project',
- 'columns' => [
- 'project_id' => 'project_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_assayprop()
- * Purpose: To describe the structure of 'assayprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'assayprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_assayprop() {
- $description = [
- 'table' => 'assayprop',
- 'fields' => [
- 'assayprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'assayprop_id',
- ],
- 'unique keys' => [
- 'assayprop_c1' => [
- 0 => 'assay_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'assayprop_idx1' => [
- 0 => 'assay_id',
- ],
- 'assayprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_biomaterial()
- * Purpose: To describe the structure of 'biomaterial' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_biomaterial() {
- $description = [
- 'table' => 'biomaterial',
- 'fields' => [
- 'biomaterial_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'taxon_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'biosourceprovider_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_id',
- ],
- 'unique keys' => [
- 'biomaterial_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'biomaterial_idx1' => [
- 0 => 'taxon_id',
- ],
- 'biomaterial_idx2' => [
- 0 => 'biosourceprovider_id',
- ],
- 'biomaterial_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'taxon_id' => 'organism_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'biosourceprovider_id' => 'contact_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_biomaterial_dbxref()
- * Purpose: To describe the structure of 'biomaterial_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_biomaterial_dbxref() {
- $description = [
- 'table' => 'biomaterial_dbxref',
- 'fields' => [
- 'biomaterial_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'biomaterial_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_dbxref_id',
- ],
- 'unique keys' => [
- 'biomaterial_dbxref_c1' => [
- 0 => 'biomaterial_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'biomaterial_dbxref_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'biomaterial_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_biomaterial_relationship()
- * Purpose: To describe the structure of 'biomaterial_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_biomaterial_relationship() {
- $description = [
- 'table' => 'biomaterial_relationship',
- 'fields' => [
- 'biomaterial_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_relationship_id',
- ],
- 'unique keys' => [
- 'biomaterial_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'biomaterial_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'biomaterial_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'biomaterial_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'subject_id' => 'biomaterial_id',
- 'object_id' => 'biomaterial_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_biomaterial_treatment()
- * Purpose: To describe the structure of 'biomaterial_treatment' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterial_treatment' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_biomaterial_treatment() {
- $description = [
- 'table' => 'biomaterial_treatment',
- 'fields' => [
- 'biomaterial_treatment_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'biomaterial_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'treatment_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'unittype_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'value' => [
- 'type' => 'float',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterial_treatment_id',
- ],
- 'unique keys' => [
- 'biomaterial_treatment_c1' => [
- 0 => 'biomaterial_id',
- 1 => 'treatment_id',
- ],
- ],
- 'indexes' => [
- 'biomaterial_treatment_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'biomaterial_treatment_idx2' => [
- 0 => 'treatment_id',
- ],
- 'biomaterial_treatment_idx3' => [
- 0 => 'unittype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'unittype_id' => 'cvterm_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- 'treatment' => [
- 'table' => 'treatment',
- 'columns' => [
- 'treatment_id' => 'treatment_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_biomaterialprop()
- * Purpose: To describe the structure of 'biomaterialprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'biomaterialprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_biomaterialprop() {
- $description = [
- 'table' => 'biomaterialprop',
- 'fields' => [
- 'biomaterialprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'biomaterial_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'biomaterialprop_id',
- ],
- 'unique keys' => [
- 'biomaterialprop_c1' => [
- 0 => 'biomaterial_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'biomaterialprop_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'biomaterialprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line()
- * Purpose: To describe the structure of 'cell_line' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line() {
- $description = [
- 'table' => 'cell_line',
- 'fields' => [
- 'cell_line_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'uniquename' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'timeaccessioned' => [
- 'type' => 'datetime',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- 'timelastmodified' => [
- 'type' => 'datetime',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_id',
- ],
- 'unique keys' => [
- 'cell_line_c1' => [
- 0 => 'uniquename',
- 1 => 'organism_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_cvterm()
- * Purpose: To describe the structure of 'cell_line_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_cvterm() {
- $description = [
- 'table' => 'cell_line_cvterm',
- 'fields' => [
- 'cell_line_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_cvterm_id',
- ],
- 'unique keys' => [
- 'cell_line_cvterm_c1' => [
- 0 => 'cell_line_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_cvtermprop()
- * Purpose: To describe the structure of 'cell_line_cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_cvtermprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_cvtermprop() {
- $description = [
- 'table' => 'cell_line_cvtermprop',
- 'fields' => [
- 'cell_line_cvtermprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_cvtermprop_id',
- ],
- 'unique keys' => [
- 'cell_line_cvtermprop_c1' => [
- 0 => 'cell_line_cvterm_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'cell_line_cvterm' => [
- 'table' => 'cell_line_cvterm',
- 'columns' => [
- 'cell_line_cvterm_id' => 'cell_line_cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_dbxref()
- * Purpose: To describe the structure of 'cell_line_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_dbxref() {
- $description = [
- 'table' => 'cell_line_dbxref',
- 'fields' => [
- 'cell_line_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_dbxref_id',
- ],
- 'unique keys' => [
- 'cell_line_dbxref_c1' => [
- 0 => 'cell_line_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_feature()
- * Purpose: To describe the structure of 'cell_line_feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_feature' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_feature() {
- $description = [
- 'table' => 'cell_line_feature',
- 'fields' => [
- 'cell_line_feature_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_feature_id',
- ],
- 'unique keys' => [
- 'cell_line_feature_c1' => [
- 0 => 'cell_line_id',
- 1 => 'feature_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_library()
- * Purpose: To describe the structure of 'cell_line_library' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_library' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_library() {
- $description = [
- 'table' => 'cell_line_library',
- 'fields' => [
- 'cell_line_library_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'library_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_library_id',
- ],
- 'unique keys' => [
- 'cell_line_library_c1' => [
- 0 => 'cell_line_id',
- 1 => 'library_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_pub()
- * Purpose: To describe the structure of 'cell_line_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_pub() {
- $description = [
- 'table' => 'cell_line_pub',
- 'fields' => [
- 'cell_line_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_pub_id',
- ],
- 'unique keys' => [
- 'cell_line_pub_c1' => [
- 0 => 'cell_line_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_relationship()
- * Purpose: To describe the structure of 'cell_line_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_relationship() {
- $description = [
- 'table' => 'cell_line_relationship',
- 'fields' => [
- 'cell_line_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_relationship_id',
- ],
- 'unique keys' => [
- 'cell_line_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'subject_id' => 'cell_line_id',
- 'object_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_line_synonym()
- * Purpose: To describe the structure of 'cell_line_synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_line_synonym' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_line_synonym() {
- $description = [
- 'table' => 'cell_line_synonym',
- 'fields' => [
- 'cell_line_synonym_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'synonym_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- 'is_internal' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_line_synonym_id',
- ],
- 'unique keys' => [
- 'cell_line_synonym_c1' => [
- 0 => 'synonym_id',
- 1 => 'cell_line_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'synonym' => [
- 'table' => 'synonym',
- 'columns' => [
- 'synonym_id' => 'synonym_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_lineprop()
- * Purpose: To describe the structure of 'cell_lineprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_lineprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_lineprop() {
- $description = [
- 'table' => 'cell_lineprop',
- 'fields' => [
- 'cell_lineprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_line_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_lineprop_id',
- ],
- 'unique keys' => [
- 'cell_lineprop_c1' => [
- 0 => 'cell_line_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'cell_line' => [
- 'table' => 'cell_line',
- 'columns' => [
- 'cell_line_id' => 'cell_line_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cell_lineprop_pub()
- * Purpose: To describe the structure of 'cell_lineprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cell_lineprop_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cell_lineprop_pub() {
- $description = [
- 'table' => 'cell_lineprop_pub',
- 'fields' => [
- 'cell_lineprop_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cell_lineprop_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'cell_lineprop_pub_id',
- ],
- 'unique keys' => [
- 'cell_lineprop_pub_c1' => [
- 0 => 'cell_lineprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'cell_lineprop' => [
- 'table' => 'cell_lineprop',
- 'columns' => [
- 'cell_lineprop_id' => 'cell_lineprop_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_channel()
- * Purpose: To describe the structure of 'channel' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'channel' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_channel() {
- $description = [
- 'table' => 'channel',
- 'fields' => [
- 'channel_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'definition' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'channel_id',
- ],
- 'unique keys' => [
- 'channel_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_contact()
- * Purpose: To describe the structure of 'contact' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'contact' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_contact() {
- $description = [
- 'table' => 'contact',
- 'fields' => [
- 'contact_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'contact_id',
- ],
- 'unique keys' => [
- 'contact_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_contact_relationship()
- * Purpose: To describe the structure of 'contact_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'contact_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_contact_relationship() {
- $description = [
- 'table' => 'contact_relationship',
- 'fields' => [
- 'contact_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'contact_relationship_id',
- ],
- 'unique keys' => [
- 'contact_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'contact_relationship_idx1' => [
- 0 => 'type_id',
- ],
- 'contact_relationship_idx2' => [
- 0 => 'subject_id',
- ],
- 'contact_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'subject_id' => 'contact_id',
- 'object_id' => 'contact_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_control()
- * Purpose: To describe the structure of 'control' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'control' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_control() {
- $description = [
- 'table' => 'control',
- 'fields' => [
- 'control_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'tableinfo_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'row_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'control_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'control_idx1' => [
- 0 => 'type_id',
- ],
- 'control_idx2' => [
- 0 => 'assay_id',
- ],
- 'control_idx3' => [
- 0 => 'tableinfo_id',
- ],
- 'control_idx4' => [
- 0 => 'row_id',
- ],
- ],
- 'foreign keys' => [
- 'tableinfo' => [
- 'table' => 'tableinfo',
- 'columns' => [
- 'tableinfo_id' => 'tableinfo_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cv()
- * Purpose: To describe the structure of 'cv' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cv' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cv() {
- $description = [
- 'table' => 'cv',
- 'fields' => [
- 'cv_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'definition' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'cv_id',
- ],
- 'unique keys' => [
- 'cv_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cvterm()
- * Purpose: To describe the structure of 'cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cvterm() {
- $description = [
- 'table' => 'cvterm',
- 'fields' => [
- 'cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cv_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '1024',
- 'not NULL' => '1',
- ],
- 'definition' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_obsolete' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- 'is_relationshiptype' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'cvterm_id',
- ],
- 'unique keys' => [
- 'cvterm_c1' => [
- 0 => 'name',
- 1 => 'cv_id',
- 2 => 'is_obsolete',
- ],
- 'cvterm_c2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'cvterm_idx1' => [
- 0 => 'cv_id',
- ],
- 'cvterm_idx2' => [
- 0 => 'name',
- ],
- 'cvterm_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cv' => [
- 'table' => 'cv',
- 'columns' => [
- 'cv_id' => 'cv_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cvterm_dbxref()
- * Purpose: To describe the structure of 'cvterm_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvterm_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cvterm_dbxref() {
- $description = [
- 'table' => 'cvterm_dbxref',
- 'fields' => [
- 'cvterm_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_for_definition' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'cvterm_dbxref_id',
- ],
- 'unique keys' => [
- 'cvterm_dbxref_c1' => [
- 0 => 'cvterm_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'cvterm_dbxref_idx1' => [
- 0 => 'cvterm_id',
- ],
- 'cvterm_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cvterm_relationship()
- * Purpose: To describe the structure of 'cvterm_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvterm_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cvterm_relationship() {
- $description = [
- 'table' => 'cvterm_relationship',
- 'fields' => [
- 'cvterm_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'cvterm_relationship_id',
- ],
- 'unique keys' => [
- 'cvterm_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'cvterm_relationship_idx1' => [
- 0 => 'type_id',
- ],
- 'cvterm_relationship_idx2' => [
- 0 => 'subject_id',
- ],
- 'cvterm_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- 'subject_id' => 'cvterm_id',
- 'object_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cvtermpath()
- * Purpose: To describe the structure of 'cvtermpath' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvtermpath' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cvtermpath() {
- $description = [
- 'table' => 'cvtermpath',
- 'fields' => [
- 'cvtermpath_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cv_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pathdistance' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'cvtermpath_id',
- ],
- 'unique keys' => [
- 'cvtermpath_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'pathdistance',
- ],
- ],
- 'indexes' => [
- 'cvtermpath_idx1' => [
- 0 => 'type_id',
- ],
- 'cvtermpath_idx2' => [
- 0 => 'subject_id',
- ],
- 'cvtermpath_idx3' => [
- 0 => 'object_id',
- ],
- 'cvtermpath_idx4' => [
- 0 => 'cv_id',
- ],
- ],
- 'foreign keys' => [
- 'cv' => [
- 'table' => 'cv',
- 'columns' => [
- 'cv_id' => 'cv_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- 'subject_id' => 'cvterm_id',
- 'object_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cvtermprop()
- * Purpose: To describe the structure of 'cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvtermprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cvtermprop() {
- $description = [
- 'table' => 'cvtermprop',
- 'fields' => [
- 'cvtermprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '1',
- 'default' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'cvtermprop_id',
- ],
- 'unique keys' => [
- 'cvterm_id' => [
- 0 => 'cvterm_id',
- 1 => 'type_id',
- 2 => 'value',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'cvtermprop_idx1' => [
- 0 => 'cvterm_id',
- ],
- 'cvtermprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_cvtermsynonym()
- * Purpose: To describe the structure of 'cvtermsynonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'cvtermsynonym' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_cvtermsynonym() {
- $description = [
- 'table' => 'cvtermsynonym',
- 'fields' => [
- 'cvtermsynonym_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'synonym' => [
- 'type' => 'varchar',
- 'length' => '1024',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'cvtermsynonym_id',
- ],
- 'unique keys' => [
- 'cvtermsynonym_c1' => [
- 0 => 'cvterm_id',
- 1 => 'synonym',
- ],
- ],
- 'indexes' => [
- 'cvtermsynonym_idx1' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_db()
- * Purpose: To describe the structure of 'db' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'db' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_db() {
- $description = [
- 'table' => 'db',
- 'fields' => [
- 'db_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'urlprefix' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'url' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'db_id',
- ],
- 'unique keys' => [
- 'db_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_dbxref()
- * Purpose: To describe the structure of 'dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_dbxref() {
- $description = [
- 'table' => 'dbxref',
- 'fields' => [
- 'dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'db_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'accession' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'version' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- 'default' => '',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'dbxref_id',
- ],
- 'unique keys' => [
- 'dbxref_c1' => [
- 0 => 'db_id',
- 1 => 'accession',
- 2 => 'version',
- ],
- ],
- 'indexes' => [
- 'dbxref_idx1' => [
- 0 => 'db_id',
- ],
- 'dbxref_idx2' => [
- 0 => 'accession',
- ],
- 'dbxref_idx3' => [
- 0 => 'version',
- ],
- ],
- 'foreign keys' => [
- 'db' => [
- 'table' => 'db',
- 'columns' => [
- 'db_id' => 'db_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_dbxrefprop()
- * Purpose: To describe the structure of 'dbxrefprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'dbxrefprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_dbxrefprop() {
- $description = [
- 'table' => 'dbxrefprop',
- 'fields' => [
- 'dbxrefprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '1',
- 'default' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'dbxrefprop_id',
- ],
- 'unique keys' => [
- 'dbxrefprop_c1' => [
- 0 => 'dbxref_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'dbxrefprop_idx1' => [
- 0 => 'dbxref_id',
- ],
- 'dbxrefprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_eimage()
- * Purpose: To describe the structure of 'eimage' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'eimage' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_eimage() {
- $description = [
- 'table' => 'eimage',
- 'fields' => [
- 'eimage_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'eimage_data' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'eimage_type' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'image_uri' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'eimage_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_element()
- * Purpose: To describe the structure of 'element' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'element' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_element() {
- $description = [
- 'table' => 'element',
- 'fields' => [
- 'element_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'arraydesign_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'element_id',
- ],
- 'unique keys' => [
- 'element_c1' => [
- 0 => 'feature_id',
- 1 => 'arraydesign_id',
- ],
- ],
- 'indexes' => [
- 'element_idx1' => [
- 0 => 'feature_id',
- ],
- 'element_idx2' => [
- 0 => 'arraydesign_id',
- ],
- 'element_idx3' => [
- 0 => 'type_id',
- ],
- 'element_idx4' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'arraydesign' => [
- 'table' => 'arraydesign',
- 'columns' => [
- 'arraydesign_id' => 'arraydesign_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_element_relationship()
- * Purpose: To describe the structure of 'element_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'element_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_element_relationship() {
- $description = [
- 'table' => 'element_relationship',
- 'fields' => [
- 'element_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'element_relationship_id',
- ],
- 'unique keys' => [
- 'element_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'element_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'element_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'element_relationship_idx3' => [
- 0 => 'object_id',
- ],
- 'element_relationship_idx4' => [
- 0 => 'value',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'element' => [
- 'table' => 'element',
- 'columns' => [
- 'subject_id' => 'element_id',
- 'object_id' => 'element_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_elementresult()
- * Purpose: To describe the structure of 'elementresult' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'elementresult' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_elementresult() {
- $description = [
- 'table' => 'elementresult',
- 'fields' => [
- 'elementresult_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'element_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'quantification_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'signal' => [
- 'type' => 'float',
- 'size' => 'big',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'elementresult_id',
- ],
- 'unique keys' => [
- 'elementresult_c1' => [
- 0 => 'element_id',
- 1 => 'quantification_id',
- ],
- ],
- 'indexes' => [
- 'elementresult_idx1' => [
- 0 => 'element_id',
- ],
- 'elementresult_idx2' => [
- 0 => 'quantification_id',
- ],
- 'elementresult_idx3' => [
- 0 => 'signal',
- ],
- ],
- 'foreign keys' => [
- 'quantification' => [
- 'table' => 'quantification',
- 'columns' => [
- 'quantification_id' => 'quantification_id',
- ],
- ],
- 'element' => [
- 'table' => 'element',
- 'columns' => [
- 'element_id' => 'element_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_elementresult_relationship()
- * Purpose: To describe the structure of 'elementresult_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'elementresult_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_elementresult_relationship() {
- $description = [
- 'table' => 'elementresult_relationship',
- 'fields' => [
- 'elementresult_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'elementresult_relationship_id',
- ],
- 'unique keys' => [
- 'elementresult_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'elementresult_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'elementresult_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'elementresult_relationship_idx3' => [
- 0 => 'object_id',
- ],
- 'elementresult_relationship_idx4' => [
- 0 => 'value',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'elementresult' => [
- 'table' => 'elementresult',
- 'columns' => [
- 'subject_id' => 'elementresult_id',
- 'object_id' => 'elementresult_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_environment()
- * Purpose: To describe the structure of 'environment' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'environment' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_environment() {
- $description = [
- 'table' => 'environment',
- 'fields' => [
- 'environment_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'environment_id',
- ],
- 'unique keys' => [
- 'environment_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'environment_idx1' => [
- 0 => 'uniquename',
- ],
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_environment_cvterm()
- * Purpose: To describe the structure of 'environment_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'environment_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_environment_cvterm() {
- $description = [
- 'table' => 'environment_cvterm',
- 'fields' => [
- 'environment_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'environment_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'environment_cvterm_id',
- ],
- 'unique keys' => [
- 'environment_cvterm_c1' => [
- 0 => 'environment_id',
- 1 => 'cvterm_id',
- ],
- ],
- 'indexes' => [
- 'environment_cvterm_idx1' => [
- 0 => 'environment_id',
- ],
- 'environment_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment_id' => 'environment_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_expression()
- * Purpose: To describe the structure of 'expression' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_expression() {
- $description = [
- 'table' => 'expression',
- 'fields' => [
- 'expression_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'md5checksum' => [
- 'type' => 'char',
- 'length' => '32',
- 'not NULL' => '',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'expression_id',
- ],
- 'unique keys' => [
- 'expression_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_expression_cvterm()
- * Purpose: To describe the structure of 'expression_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_expression_cvterm() {
- $description = [
- 'table' => 'expression_cvterm',
- 'fields' => [
- 'expression_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'expression_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- 'cvterm_type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'expression_cvterm_id',
- ],
- 'unique keys' => [
- 'expression_cvterm_c1' => [
- 0 => 'expression_id',
- 1 => 'cvterm_id',
- 2 => 'cvterm_type_id',
- ],
- ],
- 'indexes' => [
- 'expression_cvterm_idx1' => [
- 0 => 'expression_id',
- ],
- 'expression_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'expression_cvterm_idx3' => [
- 0 => 'cvterm_type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- 'cvterm_type_id' => 'cvterm_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_expression_cvtermprop()
- * Purpose: To describe the structure of 'expression_cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_cvtermprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_expression_cvtermprop() {
- $description = [
- 'table' => 'expression_cvtermprop',
- 'fields' => [
- 'expression_cvtermprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'expression_cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'expression_cvtermprop_id',
- ],
- 'unique keys' => [
- 'expression_cvtermprop_c1' => [
- 0 => 'expression_cvterm_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'expression_cvtermprop_idx1' => [
- 0 => 'expression_cvterm_id',
- ],
- 'expression_cvtermprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'expression_cvterm' => [
- 'table' => 'expression_cvterm',
- 'columns' => [
- 'expression_cvterm_id' => 'expression_cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_expression_image()
- * Purpose: To describe the structure of 'expression_image' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_image' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_expression_image() {
- $description = [
- 'table' => 'expression_image',
- 'fields' => [
- 'expression_image_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'expression_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'eimage_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'expression_image_id',
- ],
- 'unique keys' => [
- 'expression_image_c1' => [
- 0 => 'expression_id',
- 1 => 'eimage_id',
- ],
- ],
- 'indexes' => [
- 'expression_image_idx1' => [
- 0 => 'expression_id',
- ],
- 'expression_image_idx2' => [
- 0 => 'eimage_id',
- ],
- ],
- 'foreign keys' => [
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- 'eimage' => [
- 'table' => 'eimage',
- 'columns' => [
- 'eimage_id' => 'eimage_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_expression_pub()
- * Purpose: To describe the structure of 'expression_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expression_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_expression_pub() {
- $description = [
- 'table' => 'expression_pub',
- 'fields' => [
- 'expression_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'expression_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'expression_pub_id',
- ],
- 'unique keys' => [
- 'expression_pub_c1' => [
- 0 => 'expression_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'expression_pub_idx1' => [
- 0 => 'expression_id',
- ],
- 'expression_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_expressionprop()
- * Purpose: To describe the structure of 'expressionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'expressionprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_expressionprop() {
- $description = [
- 'table' => 'expressionprop',
- 'fields' => [
- 'expressionprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'expression_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'expressionprop_id',
- ],
- 'unique keys' => [
- 'expressionprop_c1' => [
- 0 => 'expression_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'expressionprop_idx1' => [
- 0 => 'expression_id',
- ],
- 'expressionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature()
- * Purpose: To describe the structure of 'feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature() {
- $description = [
- 'table' => 'feature',
- 'fields' => [
- 'feature_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'residues' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'seqlen' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'md5checksum' => [
- 'type' => 'char',
- 'length' => '32',
- 'not NULL' => '',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_analysis' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- 'is_obsolete' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- 'timeaccessioned' => [
- 'type' => 'datetime',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- 'timelastmodified' => [
- 'type' => 'datetime',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_id',
- ],
- 'unique keys' => [
- 'feature_c1' => [
- 0 => 'organism_id',
- 1 => 'uniquename',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'feature_idx1' => [
- 0 => 'dbxref_id',
- ],
- 'feature_idx2' => [
- 0 => 'organism_id',
- ],
- 'feature_idx3' => [
- 0 => 'type_id',
- ],
- 'feature_idx4' => [
- 0 => 'uniquename',
- ],
- 'feature_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'referring_tables' => [
- 0 => 'analysisfeature',
- 1 => 'element',
- 2 => 'feature_cvterm',
- 3 => 'feature_dbxref',
- 4 => 'feature_expression',
- 5 => 'feature_genotype',
- 6 => 'feature_phenotype',
- 7 => 'feature_pub',
- 8 => 'feature_relationship',
- 9 => 'feature_synonym',
- 10 => 'featureloc',
- 11 => 'featurepos',
- 12 => 'featureprop',
- 13 => 'featurerange',
- 14 => 'library_feature',
- 15 => 'phylonode',
- 16 => 'wwwuser_feature',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_cvterm()
- * Purpose: To describe the structure of 'feature_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_cvterm() {
- $description = [
- 'table' => 'feature_cvterm',
- 'fields' => [
- 'feature_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_not' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvterm_id',
- ],
- 'unique keys' => [
- 'feature_cvterm_c1' => [
- 0 => 'feature_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_cvterm_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'feature_cvterm_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_cvterm_dbxref()
- * Purpose: To describe the structure of 'feature_cvterm_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvterm_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_cvterm_dbxref() {
- $description = [
- 'table' => 'feature_cvterm_dbxref',
- 'fields' => [
- 'feature_cvterm_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvterm_dbxref_id',
- ],
- 'unique keys' => [
- 'feature_cvterm_dbxref_c1' => [
- 0 => 'feature_cvterm_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'feature_cvterm_dbxref_idx1' => [
- 0 => 'feature_cvterm_id',
- ],
- 'feature_cvterm_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_cvterm' => [
- 'table' => 'feature_cvterm',
- 'columns' => [
- 'feature_cvterm_id' => 'feature_cvterm_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_cvterm_pub()
- * Purpose: To describe the structure of 'feature_cvterm_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvterm_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_cvterm_pub() {
- $description = [
- 'table' => 'feature_cvterm_pub',
- 'fields' => [
- 'feature_cvterm_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvterm_pub_id',
- ],
- 'unique keys' => [
- 'feature_cvterm_pub_c1' => [
- 0 => 'feature_cvterm_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_cvterm_pub_idx1' => [
- 0 => 'feature_cvterm_id',
- ],
- 'feature_cvterm_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_cvterm' => [
- 'table' => 'feature_cvterm',
- 'columns' => [
- 'feature_cvterm_id' => 'feature_cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_cvtermprop()
- * Purpose: To describe the structure of 'feature_cvtermprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_cvtermprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_cvtermprop() {
- $description = [
- 'table' => 'feature_cvtermprop',
- 'fields' => [
- 'feature_cvtermprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_cvtermprop_id',
- ],
- 'unique keys' => [
- 'feature_cvtermprop_c1' => [
- 0 => 'feature_cvterm_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_cvtermprop_idx1' => [
- 0 => 'feature_cvterm_id',
- ],
- 'feature_cvtermprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_cvterm' => [
- 'table' => 'feature_cvterm',
- 'columns' => [
- 'feature_cvterm_id' => 'feature_cvterm_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_dbxref()
- * Purpose: To describe the structure of 'feature_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_dbxref() {
- $description = [
- 'table' => 'feature_dbxref',
- 'fields' => [
- 'feature_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_dbxref_id',
- ],
- 'unique keys' => [
- 'feature_dbxref_c1' => [
- 0 => 'feature_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'feature_dbxref_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_expression()
- * Purpose: To describe the structure of 'feature_expression' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_expression' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_expression() {
- $description = [
- 'table' => 'feature_expression',
- 'fields' => [
- 'feature_expression_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'expression_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_expression_id',
- ],
- 'unique keys' => [
- 'feature_expression_c1' => [
- 0 => 'expression_id',
- 1 => 'feature_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_expression_idx1' => [
- 0 => 'expression_id',
- ],
- 'feature_expression_idx2' => [
- 0 => 'feature_id',
- ],
- 'feature_expression_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'expression' => [
- 'table' => 'expression',
- 'columns' => [
- 'expression_id' => 'expression_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_expressionprop()
- * Purpose: To describe the structure of 'feature_expressionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_expressionprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_expressionprop() {
- $description = [
- 'table' => 'feature_expressionprop',
- 'fields' => [
- 'feature_expressionprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_expression_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_expressionprop_id',
- ],
- 'unique keys' => [
- 'feature_expressionprop_c1' => [
- 0 => 'feature_expression_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_expressionprop_idx1' => [
- 0 => 'feature_expression_id',
- ],
- 'feature_expressionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature_expression' => [
- 'table' => 'feature_expression',
- 'columns' => [
- 'feature_expression_id' => 'feature_expression_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_genotype()
- * Purpose: To describe the structure of 'feature_genotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_genotype' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_genotype() {
- $description = [
- 'table' => 'feature_genotype',
- 'fields' => [
- 'feature_genotype_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'genotype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'chromosome_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cgroup' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_genotype_id',
- ],
- 'unique keys' => [
- 'feature_genotype_c1' => [
- 0 => 'feature_id',
- 1 => 'genotype_id',
- 2 => 'cvterm_id',
- 3 => 'chromosome_id',
- 4 => 'rank',
- 5 => 'cgroup',
- ],
- ],
- 'indexes' => [
- 'feature_genotype_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_genotype_idx2' => [
- 0 => 'genotype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'chromosome_id' => 'feature_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_phenotype()
- * Purpose: To describe the structure of 'feature_phenotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_phenotype' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_phenotype() {
- $description = [
- 'table' => 'feature_phenotype',
- 'fields' => [
- 'feature_phenotype_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'phenotype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_phenotype_id',
- ],
- 'unique keys' => [
- 'feature_phenotype_c1' => [
- 0 => 'feature_id',
- 1 => 'phenotype_id',
- ],
- ],
- 'indexes' => [
- 'feature_phenotype_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_phenotype_idx2' => [
- 0 => 'phenotype_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype_id' => 'phenotype_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_pub()
- * Purpose: To describe the structure of 'feature_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_pub() {
- $description = [
- 'table' => 'feature_pub',
- 'fields' => [
- 'feature_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_pub_id',
- ],
- 'unique keys' => [
- 'feature_pub_c1' => [
- 0 => 'feature_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_pub_idx1' => [
- 0 => 'feature_id',
- ],
- 'feature_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_pubprop()
- * Purpose: To describe the structure of 'feature_pubprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_pubprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_pubprop() {
- $description = [
- 'table' => 'feature_pubprop',
- 'fields' => [
- 'feature_pubprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_pubprop_id',
- ],
- 'unique keys' => [
- 'feature_pubprop_c1' => [
- 0 => 'feature_pub_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_pubprop_idx1' => [
- 0 => 'feature_pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature_pub' => [
- 'table' => 'feature_pub',
- 'columns' => [
- 'feature_pub_id' => 'feature_pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_relationship()
- * Purpose: To describe the structure of 'feature_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_relationship() {
- $description = [
- 'table' => 'feature_relationship',
- 'fields' => [
- 'feature_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationship_id',
- ],
- 'unique keys' => [
- 'feature_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'feature_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'feature_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'object_id' => 'feature_id',
- 'subject_id' => 'feature_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_relationship_pub()
- * Purpose: To describe the structure of 'feature_relationship_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationship_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_relationship_pub() {
- $description = [
- 'table' => 'feature_relationship_pub',
- 'fields' => [
- 'feature_relationship_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_relationship_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationship_pub_id',
- ],
- 'unique keys' => [
- 'feature_relationship_pub_c1' => [
- 0 => 'feature_relationship_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_relationship_pub_idx1' => [
- 0 => 'feature_relationship_id',
- ],
- 'feature_relationship_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'feature_relationship' => [
- 'table' => 'feature_relationship',
- 'columns' => [
- 'feature_relationship_id' => 'feature_relationship_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_relationshipprop()
- * Purpose: To describe the structure of 'feature_relationshipprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationshipprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_relationshipprop() {
- $description = [
- 'table' => 'feature_relationshipprop',
- 'fields' => [
- 'feature_relationshipprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_relationship_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationshipprop_id',
- ],
- 'unique keys' => [
- 'feature_relationshipprop_c1' => [
- 0 => 'feature_relationship_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'feature_relationshipprop_idx1' => [
- 0 => 'feature_relationship_id',
- ],
- 'feature_relationshipprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature_relationship' => [
- 'table' => 'feature_relationship',
- 'columns' => [
- 'feature_relationship_id' => 'feature_relationship_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_relationshipprop_pub()
- * Purpose: To describe the structure of 'feature_relationshipprop_pub' to
- * tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_relationshipprop_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_relationshipprop_pub() {
- $description = [
- 'table' => 'feature_relationshipprop_pub',
- 'fields' => [
- 'feature_relationshipprop_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_relationshipprop_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_relationshipprop_pub_id',
- ],
- 'unique keys' => [
- 'feature_relationshipprop_pub_c1' => [
- 0 => 'feature_relationshipprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_relationshipprop_pub_idx1' => [
- 0 => 'feature_relationshipprop_id',
- ],
- 'feature_relationshipprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'feature_relationshipprop' => [
- 'table' => 'feature_relationshipprop',
- 'columns' => [
- 'feature_relationshipprop_id' => 'feature_relationshipprop_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_feature_synonym()
- * Purpose: To describe the structure of 'feature_synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'feature_synonym' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_feature_synonym() {
- $description = [
- 'table' => 'feature_synonym',
- 'fields' => [
- 'feature_synonym_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'synonym_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- 'is_internal' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'feature_synonym_id',
- ],
- 'unique keys' => [
- 'feature_synonym_c1' => [
- 0 => 'synonym_id',
- 1 => 'feature_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'feature_synonym_idx1' => [
- 0 => 'synonym_id',
- ],
- 'feature_synonym_idx2' => [
- 0 => 'feature_id',
- ],
- 'feature_synonym_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'synonym' => [
- 'table' => 'synonym',
- 'columns' => [
- 'synonym_id' => 'synonym_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featureloc()
- * Purpose: To describe the structure of 'featureloc' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureloc' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featureloc() {
- $description = [
- 'table' => 'featureloc',
- 'fields' => [
- 'featureloc_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'srcfeature_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'fmin' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'is_fmin_partial' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- 'fmax' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'is_fmax_partial' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- 'strand' => [
- 'type' => 'int',
- 'size' => 'small',
- 'not NULL' => '',
- ],
- 'phase' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'residue_info' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'locgroup' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'featureloc_id',
- ],
- 'unique keys' => [
- 'featureloc_c1' => [
- 0 => 'feature_id',
- 1 => 'locgroup',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'binloc_boxrange' => [
- 0 => 'fmin',
- ],
- 'binloc_boxrange_src' => [
- 0 => 'srcfeature_id',
- 1 => 'fmin',
- ],
- 'featureloc_idx1' => [
- 0 => 'feature_id',
- ],
- 'featureloc_idx2' => [
- 0 => 'srcfeature_id',
- ],
- 'featureloc_idx3' => [
- 0 => 'srcfeature_id',
- 1 => 'fmin',
- 2 => 'fmax',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'srcfeature_id' => 'feature_id',
- ],
- ],
- ],
- 'referring_tables' => [
- 0 => 'analysisfeature',
- 1 => 'featureloc_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featureloc_pub()
- * Purpose: To describe the structure of 'featureloc_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureloc_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featureloc_pub() {
- $description = [
- 'table' => 'featureloc_pub',
- 'fields' => [
- 'featureloc_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'featureloc_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'featureloc_pub_id',
- ],
- 'unique keys' => [
- 'featureloc_pub_c1' => [
- 0 => 'featureloc_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'featureloc_pub_idx1' => [
- 0 => 'featureloc_id',
- ],
- 'featureloc_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'featureloc' => [
- 'table' => 'featureloc',
- 'columns' => [
- 'featureloc_id' => 'featureloc_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featuremap()
- * Purpose: To describe the structure of 'featuremap' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featuremap' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featuremap() {
- $description = [
- 'table' => 'featuremap',
- 'fields' => [
- 'featuremap_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'unittype_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'featuremap_id',
- ],
- 'unique keys' => [
- 'featuremap_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'unittype_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featuremap_pub()
- * Purpose: To describe the structure of 'featuremap_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featuremap_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featuremap_pub() {
- $description = [
- 'table' => 'featuremap_pub',
- 'fields' => [
- 'featuremap_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'featuremap_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'featuremap_pub_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'featuremap_pub_idx1' => [
- 0 => 'featuremap_id',
- ],
- 'featuremap_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'featuremap' => [
- 'table' => 'featuremap',
- 'columns' => [
- 'featuremap_id' => 'featuremap_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featurepos()
- * Purpose: To describe the structure of 'featurepos' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featurepos' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featurepos() {
- $description = [
- 'table' => 'featurepos',
- 'fields' => [
- 'featurepos_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'featuremap_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'map_feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'mappos' => [
- 'type' => 'float',
- 'size' => 'big',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'featurepos_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'featurepos_idx1' => [
- 0 => 'featuremap_id',
- ],
- 'featurepos_idx2' => [
- 0 => 'feature_id',
- ],
- 'featurepos_idx3' => [
- 0 => 'map_feature_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'map_feature_id' => 'feature_id',
- ],
- ],
- 'featuremap' => [
- 'table' => 'featuremap',
- 'columns' => [
- 'featuremap_id' => 'featuremap_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featureprop()
- * Purpose: To describe the structure of 'featureprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featureprop() {
- $description = [
- 'table' => 'featureprop',
- 'fields' => [
- 'featureprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'featureprop_id',
- ],
- 'unique keys' => [
- 'featureprop_c1' => [
- 0 => 'feature_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'featureprop_idx1' => [
- 0 => 'feature_id',
- ],
- 'featureprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- 'referring_tables' => [
- 0 => 'analysisfeature',
- 1 => 'featureprop_pub',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featureprop_pub()
- * Purpose: To describe the structure of 'featureprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featureprop_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featureprop_pub() {
- $description = [
- 'table' => 'featureprop_pub',
- 'fields' => [
- 'featureprop_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'featureprop_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'featureprop_pub_id',
- ],
- 'unique keys' => [
- 'featureprop_pub_c1' => [
- 0 => 'featureprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'featureprop_pub_idx1' => [
- 0 => 'featureprop_id',
- ],
- 'featureprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'featureprop' => [
- 'table' => 'featureprop',
- 'columns' => [
- 'featureprop_id' => 'featureprop_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_featurerange()
- * Purpose: To describe the structure of 'featurerange' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'featurerange' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_featurerange() {
- $description = [
- 'table' => 'featurerange',
- 'fields' => [
- 'featurerange_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'featuremap_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'leftstartf_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'leftendf_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'rightstartf_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'rightendf_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rangestr' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'featurerange_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'featurerange_idx1' => [
- 0 => 'featuremap_id',
- ],
- 'featurerange_idx2' => [
- 0 => 'feature_id',
- ],
- 'featurerange_idx3' => [
- 0 => 'leftstartf_id',
- ],
- 'featurerange_idx4' => [
- 0 => 'leftendf_id',
- ],
- 'featurerange_idx5' => [
- 0 => 'rightstartf_id',
- ],
- 'featurerange_idx6' => [
- 0 => 'rightendf_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- 'leftstartf_id' => 'feature_id',
- 'leftendf_id' => 'feature_id',
- 'rightstartf_id' => 'feature_id',
- 'rightendf_id' => 'feature_id',
- ],
- ],
- 'featuremap' => [
- 'table' => 'featuremap',
- 'columns' => [
- 'featuremap_id' => 'featuremap_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_genotype()
- * Purpose: To describe the structure of 'genotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'genotype' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_genotype() {
- $description = [
- 'table' => 'genotype',
- 'fields' => [
- 'genotype_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'genotype_id',
- ],
- 'unique keys' => [
- 'genotype_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'genotype_idx1' => [
- 0 => 'uniquename',
- ],
- 'genotype_idx2' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- ],
- 'referring_tables' => [
- 'analysisfeature',
- 'feature_genotype',
- 'phendesc',
- 'phenotype_comparison',
- 'phenstatement',
- 'stock_genotype',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_library()
- * Purpose: To describe the structure of 'library' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_library() {
- $description = [
- 'table' => 'library',
- 'referring_tables' => [
- 0 => 'cell_line_library',
- 1 => 'library_cvterm',
- 2 => 'library_dbxref',
- 3 => 'library_feature',
- 4 => 'library_pub',
- 5 => 'library_synonym',
- 6 => 'libraryprop',
- ],
- 'fields' => [
- 'library_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_obsolete' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- 'timeaccessioned' => [
- 'type' => 'datetime',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- 'timelastmodified' => [
- 'type' => 'datetime',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- ],
- 'primary key' => [
- 0 => 'library_id',
- ],
- 'unique keys' => [
- 'library_c1' => [
- 0 => 'organism_id',
- 1 => 'uniquename',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'library_idx1' => [
- 0 => 'organism_id',
- ],
- 'library_idx2' => [
- 0 => 'type_id',
- ],
- 'library_idx3' => [
- 0 => 'uniquename',
- ],
- 'library_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_library_cvterm()
- * Purpose: To describe the structure of 'library_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_library_cvterm() {
- $description = [
- 'table' => 'library_cvterm',
- 'fields' => [
- 'library_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'library_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'library_cvterm_id',
- ],
- 'unique keys' => [
- 'library_cvterm_c1' => [
- 0 => 'library_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'library_cvterm_idx1' => [
- 0 => 'library_id',
- ],
- 'library_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'library_cvterm_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_library_dbxref()
- * Purpose: To describe the structure of 'library_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_library_dbxref() {
- $description = [
- 'table' => 'library_dbxref',
- 'fields' => [
- 'library_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'library_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'library_dbxref_id',
- ],
- 'unique keys' => [
- 'library_dbxref_c1' => [
- 0 => 'library_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'library_dbxref_idx1' => [
- 0 => 'library_id',
- ],
- 'library_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_library_feature()
- * Purpose: To describe the structure of 'library_feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_feature' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_library_feature() {
- $description = [
- 'table' => 'library_feature',
- 'fields' => [
- 'library_feature_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'library_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'library_feature_id',
- ],
- 'unique keys' => [
- 'library_feature_c1' => [
- 0 => 'library_id',
- 1 => 'feature_id',
- ],
- ],
- 'indexes' => [
- 'library_feature_idx1' => [
- 0 => 'library_id',
- ],
- 'library_feature_idx2' => [
- 0 => 'feature_id',
- ],
- ],
- 'foreign keys' => [
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_library_pub()
- * Purpose: To describe the structure of 'library_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_library_pub() {
- $description = [
- 'table' => 'library_pub',
- 'fields' => [
- 'library_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'library_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'library_pub_id',
- ],
- 'unique keys' => [
- 'library_pub_c1' => [
- 0 => 'library_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'library_pub_idx1' => [
- 0 => 'library_id',
- ],
- 'library_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_library_synonym()
- * Purpose: To describe the structure of 'library_synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'library_synonym' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_library_synonym() {
- $description = [
- 'table' => 'library_synonym',
- 'fields' => [
- 'library_synonym_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'synonym_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'library_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'true',
- ],
- 'is_internal' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'library_synonym_id',
- ],
- 'unique keys' => [
- 'library_synonym_c1' => [
- 0 => 'synonym_id',
- 1 => 'library_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'library_synonym_idx1' => [
- 0 => 'synonym_id',
- ],
- 'library_synonym_idx2' => [
- 0 => 'library_id',
- ],
- 'library_synonym_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'synonym' => [
- 'table' => 'synonym',
- 'columns' => [
- 'synonym_id' => 'synonym_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_libraryprop()
- * Purpose: To describe the structure of 'libraryprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'libraryprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_libraryprop() {
- $description = [
- 'table' => 'libraryprop',
- 'fields' => [
- 'libraryprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'library_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'libraryprop_id',
- ],
- 'unique keys' => [
- 'libraryprop_c1' => [
- 0 => 'library_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'libraryprop_idx1' => [
- 0 => 'library_id',
- ],
- 'libraryprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'library' => [
- 'table' => 'library',
- 'columns' => [
- 'library_id' => 'library_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_libraryprop_pub()
- * Purpose: To describe the structure of 'libraryprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'libraryprop_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_libraryprop_pub() {
- $description = [
- 'table' => 'libraryprop_pub',
- 'fields' => [
- 'libraryprop_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'libraryprop_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'libraryprop_pub_id',
- ],
- 'unique keys' => [
- 'libraryprop_pub_c1' => [
- 0 => 'libraryprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'libraryprop_pub_idx1' => [
- 0 => 'libraryprop_id',
- ],
- 'libraryprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'libraryprop' => [
- 'table' => 'libraryprop',
- 'columns' => [
- 'libraryprop_id' => 'libraryprop_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_magedocumentation()
- * Purpose: To describe the structure of 'magedocumentation' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'magedocumentation' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_magedocumentation() {
- $description = [
- 'table' => 'magedocumentation',
- 'fields' => [
- 'magedocumentation_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'mageml_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'tableinfo_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'row_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'mageidentifier' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'magedocumentation_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'magedocumentation_idx1' => [
- 0 => 'mageml_id',
- ],
- 'magedocumentation_idx2' => [
- 0 => 'tableinfo_id',
- ],
- 'magedocumentation_idx3' => [
- 0 => 'row_id',
- ],
- ],
- 'foreign keys' => [
- 'tableinfo' => [
- 'table' => 'tableinfo',
- 'columns' => [
- 'tableinfo_id' => 'tableinfo_id',
- ],
- ],
- 'mageml' => [
- 'table' => 'mageml',
- 'columns' => [
- 'mageml_id' => 'mageml_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_mageml()
- * Purpose: To describe the structure of 'mageml' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'mageml' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_mageml() {
- $description = [
- 'table' => 'mageml',
- 'fields' => [
- 'mageml_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'mage_package' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'mage_ml' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'mageml_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_materialized_view()
- * Purpose: To describe the structure of 'materialized_view' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'materialized_view' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_materialized_view() {
- $description = [
- 'table' => 'materialized_view',
- 'fields' => [
- 'materialized_view_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'last_update' => [
- 'type' => 'datetime',
- 'not NULL' => '',
- ],
- 'refresh_time' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '64',
- 'not NULL' => '',
- ],
- 'mv_schema' => [
- 'type' => 'varchar',
- 'length' => '64',
- 'not NULL' => '',
- ],
- 'mv_table' => [
- 'type' => 'varchar',
- 'length' => '128',
- 'not NULL' => '',
- ],
- 'mv_specs' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'indexed' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'query' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'special_index' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- ],
- 'unique keys' => [
- 'name' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_organism()
- * Purpose: To describe the structure of 'organism' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'organism' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_organism() {
- $description = [
- 'table' => 'organism',
- 'fields' => [
- 'organism_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'abbreviation' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'genus' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'species' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'common_name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'comment' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'organism_id',
- ],
- 'unique keys' => [
- 'organism_c1' => [
- 0 => 'genus',
- 1 => 'species',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- 'referring_tables' => [
- 0 => 'biomaterial',
- 1 => 'feature',
- 2 => 'library',
- 3 => 'organism_dbxref',
- 4 => 'organismprop',
- 5 => 'phylonode_organism',
- 6 => 'stock',
- 7 => 'wwwuser_organism',
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_organism_dbxref()
- * Purpose: To describe the structure of 'organism_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'organism_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_organism_dbxref() {
- $description = [
- 'table' => 'organism_dbxref',
- 'fields' => [
- 'organism_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'organism_dbxref_id',
- ],
- 'unique keys' => [
- 'organism_dbxref_c1' => [
- 0 => 'organism_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'organism_dbxref_idx1' => [
- 0 => 'organism_id',
- ],
- 'organism_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_organismprop()
- * Purpose: To describe the structure of 'organismprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'organismprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_organismprop() {
- $description = [
- 'table' => 'organismprop',
- 'fields' => [
- 'organismprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'organismprop_id',
- ],
- 'unique keys' => [
- 'organismprop_c1' => [
- 0 => 'organism_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'organismprop_idx1' => [
- 0 => 'organism_id',
- ],
- 'organismprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phendesc()
- * Purpose: To describe the structure of 'phendesc' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phendesc' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phendesc() {
- $description = [
- 'table' => 'phendesc',
- 'fields' => [
- 'phendesc_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'genotype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'environment_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phendesc_id',
- ],
- 'unique keys' => [
- 'phendesc_c1' => [
- 0 => 'genotype_id',
- 1 => 'environment_id',
- 2 => 'type_id',
- 3 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phendesc_idx1' => [
- 0 => 'genotype_id',
- ],
- 'phendesc_idx2' => [
- 0 => 'environment_id',
- ],
- 'phendesc_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment_id' => 'environment_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phenotype()
- * Purpose: To describe the structure of 'phenotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phenotype() {
- $description = [
- 'table' => 'phenotype',
- 'fields' => [
- 'phenotype_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'observable_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'attr_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'cvalue_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_id',
- ],
- 'unique keys' => [
- 'phenotype_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'phenotype_idx1' => [
- 0 => 'cvalue_id',
- ],
- 'phenotype_idx2' => [
- 0 => 'observable_id',
- ],
- 'phenotype_idx3' => [
- 0 => 'attr_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'observable_id' => 'cvterm_id',
- 'attr_id' => 'cvterm_id',
- 'cvalue_id' => 'cvterm_id',
- 'assay_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phenotype_comparison()
- * Purpose: To describe the structure of 'phenotype_comparison' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype_comparison' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phenotype_comparison() {
- $description = [
- 'table' => 'phenotype_comparison',
- 'fields' => [
- 'phenotype_comparison_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'genotype1_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'environment1_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'genotype2_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'environment2_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'phenotype1_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'phenotype2_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_comparison_id',
- ],
- 'unique keys' => [
- 'phenotype_comparison_c1' => [
- 0 => 'genotype1_id',
- 1 => 'environment1_id',
- 2 => 'genotype2_id',
- 3 => 'environment2_id',
- 4 => 'phenotype1_id',
- 5 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phenotype_comparison_idx1' => [
- 0 => 'genotype1_id',
- ],
- 'phenotype_comparison_idx2' => [
- 0 => 'genotype2_id',
- ],
- 'phenotype_comparison_idx4' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype1_id' => 'phenotype_id',
- 'phenotype2_id' => 'phenotype_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype1_id' => 'genotype_id',
- 'genotype2_id' => 'genotype_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment1_id' => 'environment_id',
- 'environment2_id' => 'environment_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phenotype_comparison_cvterm()
- * Purpose: To describe the structure of 'phenotype_comparison_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype_comparison_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phenotype_comparison_cvterm() {
- $description = [
- 'table' => 'phenotype_comparison_cvterm',
- 'fields' => [
- 'phenotype_comparison_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phenotype_comparison_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_comparison_cvterm_id',
- ],
- 'unique keys' => [
- 'phenotype_comparison_cvterm_c1' => [
- 0 => 'phenotype_comparison_id',
- 1 => 'cvterm_id',
- ],
- ],
- 'indexes' => [
- 'phenotype_comparison_cvterm_idx1' => [
- 0 => 'phenotype_comparison_id',
- ],
- 'phenotype_comparison_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'phenotype_comparison' => [
- 'table' => 'phenotype_comparison',
- 'columns' => [
- 'phenotype_comparison_id' => 'phenotype_comparison_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phenotype_cvterm()
- * Purpose: To describe the structure of 'phenotype_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenotype_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phenotype_cvterm() {
- $description = [
- 'table' => 'phenotype_cvterm',
- 'fields' => [
- 'phenotype_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phenotype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'phenotype_cvterm_id',
- ],
- 'unique keys' => [
- 'phenotype_cvterm_c1' => [
- 0 => 'phenotype_id',
- 1 => 'cvterm_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'phenotype_cvterm_idx1' => [
- 0 => 'phenotype_id',
- ],
- 'phenotype_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype_id' => 'phenotype_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phenstatement()
- * Purpose: To describe the structure of 'phenstatement' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phenstatement' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phenstatement() {
- $description = [
- 'table' => 'phenstatement',
- 'fields' => [
- 'phenstatement_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'genotype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'environment_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'phenotype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phenstatement_id',
- ],
- 'unique keys' => [
- 'phenstatement_c1' => [
- 0 => 'genotype_id',
- 1 => 'phenotype_id',
- 2 => 'environment_id',
- 3 => 'type_id',
- 4 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phenstatement_idx1' => [
- 0 => 'genotype_id',
- ],
- 'phenstatement_idx2' => [
- 0 => 'phenotype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'phenotype' => [
- 'table' => 'phenotype',
- 'columns' => [
- 'phenotype_id' => 'phenotype_id',
- ],
- ],
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- 'environment' => [
- 'table' => 'environment',
- 'columns' => [
- 'environment_id' => 'environment_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylonode()
- * Purpose: To describe the structure of 'phylonode' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylonode() {
- $description = [
- 'table' => 'phylonode',
- 'fields' => [
- 'phylonode_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phylotree_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'parent_phylonode_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'left_idx' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'right_idx' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'label' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'distance' => [
- 'type' => 'float',
- 'size' => 'big',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_id',
- ],
- 'unique keys' => [
- 'phylotree_id' => [
- 0 => 'phylotree_id',
- 1 => 'left_idx',
- ],
- 'phylonode_phylotree_id_key1' => [
- 0 => 'phylotree_id',
- 1 => 'right_idx',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'phylotree' => [
- 'table' => 'phylotree',
- 'columns' => [
- 'phylotree_id' => 'phylotree_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'parent_phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylonode_dbxref()
- * Purpose: To describe the structure of 'phylonode_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylonode_dbxref() {
- $description = [
- 'table' => 'phylonode_dbxref',
- 'fields' => [
- 'phylonode_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phylonode_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_dbxref_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_dbxref_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonode_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylonode_organism()
- * Purpose: To describe the structure of 'phylonode_organism' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_organism' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylonode_organism() {
- $description = [
- 'table' => 'phylonode_organism',
- 'fields' => [
- 'phylonode_organism_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phylonode_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_organism_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_organism_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonode_organism_idx2' => [
- 0 => 'organism_id',
- ],
- ],
- 'foreign keys' => [
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylonode_pub()
- * Purpose: To describe the structure of 'phylonode_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylonode_pub() {
- $description = [
- 'table' => 'phylonode_pub',
- 'fields' => [
- 'phylonode_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phylonode_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_pub_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_pub_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonode_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylonode_relationship()
- * Purpose: To describe the structure of 'phylonode_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonode_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylonode_relationship() {
- $description = [
- 'table' => 'phylonode_relationship',
- 'fields' => [
- 'phylonode_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'phylotree_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phylonode_relationship_id',
- ],
- 'unique keys' => [
- 'subject_id' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'phylonode_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'phylonode_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'phylonode_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'phylotree' => [
- 'table' => 'phylotree',
- 'columns' => [
- 'phylotree_id' => 'phylotree_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'subject_id' => 'phylonode_id',
- 'object_id' => 'phylonode_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylonodeprop()
- * Purpose: To describe the structure of 'phylonodeprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylonodeprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylonodeprop() {
- $description = [
- 'table' => 'phylonodeprop',
- 'fields' => [
- 'phylonodeprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phylonode_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '1',
- 'default' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'phylonodeprop_id',
- ],
- 'unique keys' => [
- 'phylonode_id' => [
- 0 => 'phylonode_id',
- 1 => 'type_id',
- 2 => 'value',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'phylonodeprop_idx1' => [
- 0 => 'phylonode_id',
- ],
- 'phylonodeprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'phylonode' => [
- 'table' => 'phylonode',
- 'columns' => [
- 'phylonode_id' => 'phylonode_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylotree()
- * Purpose: To describe the structure of 'phylotree' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylotree' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylotree() {
- $description = [
- 'table' => 'phylotree',
- 'fields' => [
- 'phylotree_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'analysis_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'comment' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'phylotree_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'phylotree_idx1' => [
- 0 => 'phylotree_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_phylotree_pub()
- * Purpose: To describe the structure of 'phylotree_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'phylotree_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_phylotree_pub() {
- $description = [
- 'table' => 'phylotree_pub',
- 'fields' => [
- 'phylotree_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'phylotree_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'phylotree_pub_id',
- ],
- 'unique keys' => [
- 'phylotree_id' => [
- 0 => 'phylotree_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'phylotree_pub_idx1' => [
- 0 => 'phylotree_id',
- ],
- 'phylotree_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'phylotree' => [
- 'table' => 'phylotree',
- 'columns' => [
- 'phylotree_id' => 'phylotree_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_project()
- * Purpose: To describe the structure of 'project' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'project' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_project() {
- $description = [
- 'table' => 'project',
- 'fields' => [
- 'project_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'project_id',
- ],
- 'unique keys' => [
- 'project_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_protocol()
- * Purpose: To describe the structure of 'protocol' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'protocol' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_protocol() {
- $description = [
- 'table' => 'protocol',
- 'fields' => [
- 'protocol_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'uri' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'protocoldescription' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'hardwaredescription' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'softwaredescription' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'protocol_id',
- ],
- 'unique keys' => [
- 'protocol_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'protocol_idx1' => [
- 0 => 'type_id',
- ],
- 'protocol_idx2' => [
- 0 => 'pub_id',
- ],
- 'protocol_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_protocolparam()
- * Purpose: To describe the structure of 'protocolparam' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'protocolparam' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_protocolparam() {
- $description = [
- 'table' => 'protocolparam',
- 'fields' => [
- 'protocolparam_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'protocol_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'datatype_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'unittype_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'protocolparam_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'protocolparam_idx1' => [
- 0 => 'protocol_id',
- ],
- 'protocolparam_idx2' => [
- 0 => 'datatype_id',
- ],
- 'protocolparam_idx3' => [
- 0 => 'unittype_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'datatype_id' => 'cvterm_id',
- 'unittype_id' => 'cvterm_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_pub()
- * Purpose: To describe the structure of 'pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_pub() {
- $description = [
- 'table' => 'pub',
- 'fields' => [
- 'pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'title' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'volumetitle' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'volume' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'series_name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'issue' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'pyear' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'pages' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'miniref' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_obsolete' => [
- 'type' => 'boolean',
- 'not NULL' => '',
- 'default' => 'false',
- ],
- 'publisher' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'pubplace' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'pub_id',
- ],
- 'unique keys' => [
- 'pub_c1' => [
- 0 => 'uniquename',
- ],
- ],
- 'indexes' => [
- 'pub_idx1' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_pub_dbxref()
- * Purpose: To describe the structure of 'pub_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pub_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_pub_dbxref() {
- $description = [
- 'table' => 'pub_dbxref',
- 'fields' => [
- 'pub_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'pub_dbxref_id',
- ],
- 'unique keys' => [
- 'pub_dbxref_c1' => [
- 0 => 'pub_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'pub_dbxref_idx1' => [
- 0 => 'pub_id',
- ],
- 'pub_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_pub_relationship()
- * Purpose: To describe the structure of 'pub_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pub_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_pub_relationship() {
- $description = [
- 'table' => 'pub_relationship',
- 'fields' => [
- 'pub_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'pub_relationship_id',
- ],
- 'unique keys' => [
- 'pub_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'pub_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'pub_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'pub_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'subject_id' => 'pub_id',
- 'object_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_pubauthor()
- * Purpose: To describe the structure of 'pubauthor' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pubauthor' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_pubauthor() {
- $description = [
- 'table' => 'pubauthor',
- 'fields' => [
- 'pubauthor_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'editor' => [
- 'type' => 'boolean',
- 'not NULL' => '',
- 'default' => 'false',
- ],
- 'surname' => [
- 'type' => 'varchar',
- 'length' => '100',
- 'not NULL' => '1',
- ],
- 'givennames' => [
- 'type' => 'varchar',
- 'length' => '100',
- 'not NULL' => '',
- ],
- 'suffix' => [
- 'type' => 'varchar',
- 'length' => '100',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'pubauthor_id',
- ],
- 'unique keys' => [
- 'pubauthor_c1' => [
- 0 => 'pub_id',
- 1 => 'rank',
- ],
- ],
- 'indexes' => [
- 'pubauthor_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_pubprop()
- * Purpose: To describe the structure of 'pubprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'pubprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_pubprop() {
- $description = [
- 'table' => 'pubprop',
- 'fields' => [
- 'pubprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'pubprop_id',
- ],
- 'unique keys' => [
- 'pubprop_c1' => [
- 0 => 'pub_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'pubprop_idx1' => [
- 0 => 'pub_id',
- ],
- 'pubprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_quantification()
- * Purpose: To describe the structure of 'quantification' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'quantification' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_quantification() {
- $description = [
- 'table' => 'quantification',
- 'fields' => [
- 'quantification_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'acquisition_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'operator_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'protocol_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'analysis_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'quantificationdate' => [
- 'type' => 'datetime',
- 'not NULL' => '',
- 'default' => 'ow(',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'uri' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'quantification_id',
- ],
- 'unique keys' => [
- 'quantification_c1' => [
- 0 => 'name',
- 1 => 'analysis_id',
- ],
- ],
- 'indexes' => [
- 'quantification_idx1' => [
- 0 => 'acquisition_id',
- ],
- 'quantification_idx2' => [
- 0 => 'operator_id',
- ],
- 'quantification_idx3' => [
- 0 => 'protocol_id',
- ],
- 'quantification_idx4' => [
- 0 => 'analysis_id',
- ],
- ],
- 'foreign keys' => [
- 'analysis' => [
- 'table' => 'analysis',
- 'columns' => [
- 'analysis_id' => 'analysis_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'operator_id' => 'contact_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- 'acquisition' => [
- 'table' => 'acquisition',
- 'columns' => [
- 'acquisition_id' => 'acquisition_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_quantification_relationship()
- * Purpose: To describe the structure of 'quantification_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'quantification_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_quantification_relationship() {
- $description = [
- 'table' => 'quantification_relationship',
- 'fields' => [
- 'quantification_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'quantification_relationship_id',
- ],
- 'unique keys' => [
- 'quantification_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'quantification_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'quantification_relationship_idx2' => [
- 0 => 'type_id',
- ],
- 'quantification_relationship_idx3' => [
- 0 => 'object_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'quantification' => [
- 'table' => 'quantification',
- 'columns' => [
- 'subject_id' => 'quantification_id',
- 'object_id' => 'quantification_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_quantificationprop()
- * Purpose: To describe the structure of 'quantificationprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'quantificationprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_quantificationprop() {
- $description = [
- 'table' => 'quantificationprop',
- 'fields' => [
- 'quantificationprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'quantification_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'quantificationprop_id',
- ],
- 'unique keys' => [
- 'quantificationprop_c1' => [
- 0 => 'quantification_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'quantificationprop_idx1' => [
- 0 => 'quantification_id',
- ],
- 'quantificationprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'quantification' => [
- 'table' => 'quantification',
- 'columns' => [
- 'quantification_id' => 'quantification_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stock()
- * Purpose: To describe the structure of 'stock' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stock() {
- $description = [
- 'table' => 'stock',
- 'referring_tables' => [
- 1 => 'stock_cvterm',
- 2 => 'stock_dbxref',
- 3 => 'stock_genotype',
- 4 => 'stock_pub',
- 5 => 'stock_relationship',
- 7 => 'stockcollection_stock',
- 8 => 'stockprop',
- ],
- 'fields' => [
- 'stock_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'organism_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_obsolete' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'false',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_id',
- ],
- 'unique keys' => [
- 'stock_c1' => [
- 0 => 'organism_id',
- 1 => 'uniquename',
- 2 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'stock_idx1' => [
- 0 => 'dbxref_id',
- ],
- 'stock_idx2' => [
- 0 => 'organism_id',
- ],
- 'stock_idx3' => [
- 0 => 'type_id',
- ],
- 'stock_idx4' => [
- 0 => 'uniquename',
- ],
- 'stock_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'organism' => [
- 'table' => 'organism',
- 'columns' => [
- 'organism_id' => 'organism_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stock_cvterm()
- * Purpose: To describe the structure of 'stock_cvterm' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_cvterm' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stock_cvterm() {
- $description = [
- 'table' => 'stock_cvterm',
- 'fields' => [
- 'stock_cvterm_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stock_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'cvterm_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_cvterm_id',
- ],
- 'unique keys' => [
- 'stock_cvterm_c1' => [
- 0 => 'stock_id',
- 1 => 'cvterm_id',
- 2 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'stock_cvterm_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_cvterm_idx2' => [
- 0 => 'cvterm_id',
- ],
- 'stock_cvterm_idx3' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'cvterm_id' => 'cvterm_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stock_dbxref()
- * Purpose: To describe the structure of 'stock_dbxref' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_dbxref' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stock_dbxref() {
- $description = [
- 'table' => 'stock_dbxref',
- 'fields' => [
- 'stock_dbxref_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stock_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'is_current' => [
- 'type' => 'boolean',
- 'not NULL' => '1',
- 'default' => 'true',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_dbxref_id',
- ],
- 'unique keys' => [
- 'stock_dbxref_c1' => [
- 0 => 'stock_id',
- 1 => 'dbxref_id',
- ],
- ],
- 'indexes' => [
- 'stock_dbxref_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_dbxref_idx2' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stock_genotype()
- * Purpose: To describe the structure of 'stock_genotype' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_genotype' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stock_genotype() {
- $description = [
- 'table' => 'stock_genotype',
- 'fields' => [
- 'stock_genotype_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stock_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'genotype_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_genotype_id',
- ],
- 'unique keys' => [
- 'stock_genotype_c1' => [
- 0 => 'stock_id',
- 1 => 'genotype_id',
- ],
- ],
- 'indexes' => [
- 'stock_genotype_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_genotype_idx2' => [
- 0 => 'genotype_id',
- ],
- ],
- 'foreign keys' => [
- 'genotype' => [
- 'table' => 'genotype',
- 'columns' => [
- 'genotype_id' => 'genotype_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stock_pub()
- * Purpose: To describe the structure of 'stock_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stock_pub() {
- $description = [
- 'table' => 'stock_pub',
- 'fields' => [
- 'stock_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stock_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_pub_id',
- ],
- 'unique keys' => [
- 'stock_pub_c1' => [
- 0 => 'stock_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'stock_pub_idx1' => [
- 0 => 'stock_id',
- ],
- 'stock_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stock_relationship()
- * Purpose: To describe the structure of 'stock_relationship' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_relationship' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stock_relationship() {
- $description = [
- 'table' => 'stock_relationship',
- 'fields' => [
- 'stock_relationship_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'subject_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'object_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_relationship_id',
- ],
- 'unique keys' => [
- 'stock_relationship_c1' => [
- 0 => 'subject_id',
- 1 => 'object_id',
- 2 => 'type_id',
- 3 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stock_relationship_idx1' => [
- 0 => 'subject_id',
- ],
- 'stock_relationship_idx2' => [
- 0 => 'object_id',
- ],
- 'stock_relationship_idx3' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'subject_id' => 'stock_id',
- 'object_id' => 'stock_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stock_relationship_pub()
- * Purpose: To describe the structure of 'stock_relationship_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stock_relationship_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stock_relationship_pub() {
- $description = [
- 'table' => 'stock_relationship_pub',
- 'fields' => [
- 'stock_relationship_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stock_relationship_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'stock_relationship_pub_id',
- ],
- 'unique keys' => [
- 'stock_relationship_pub_c1' => [
- 0 => 'stock_relationship_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'stock_relationship_pub_idx1' => [
- 0 => 'stock_relationship_id',
- ],
- 'stock_relationship_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stock_relationship' => [
- 'table' => 'stock_relationship',
- 'columns' => [
- 'stock_relationship_id' => 'stock_relationship_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stockcollection()
- * Purpose: To describe the structure of 'stockcollection' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockcollection' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stockcollection() {
- $description = [
- 'table' => 'stockcollection',
- 'fields' => [
- 'stockcollection_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'contact_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '',
- ],
- 'uniquename' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'stockcollection_id',
- ],
- 'unique keys' => [
- 'stockcollection_c1' => [
- 0 => 'uniquename',
- 1 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'stockcollection_idx1' => [
- 0 => 'contact_id',
- ],
- 'stockcollection_idx2' => [
- 0 => 'type_id',
- ],
- 'stockcollection_idx3' => [
- 0 => 'uniquename',
- ],
- 'stockcollection_name_ind1' => [
- 0 => 'name',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'contact_id' => 'contact_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stockcollection_stock()
- * Purpose: To describe the structure of 'stockcollection_stock' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockcollection_stock' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stockcollection_stock() {
- $description = [
- 'table' => 'stockcollection_stock',
- 'fields' => [
- 'stockcollection_stock_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stockcollection_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'stock_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'stockcollection_stock_id',
- ],
- 'unique keys' => [
- 'stockcollection_stock_c1' => [
- 0 => 'stockcollection_id',
- 1 => 'stock_id',
- ],
- ],
- 'indexes' => [
- 'stockcollection_stock_idx1' => [
- 0 => 'stockcollection_id',
- ],
- 'stockcollection_stock_idx2' => [
- 0 => 'stock_id',
- ],
- ],
- 'foreign keys' => [
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- 'stockcollection' => [
- 'table' => 'stockcollection',
- 'columns' => [
- 'stockcollection_id' => 'stockcollection_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stockcollectionprop()
- * Purpose: To describe the structure of 'stockcollectionprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockcollectionprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stockcollectionprop() {
- $description = [
- 'table' => 'stockcollectionprop',
- 'fields' => [
- 'stockcollectionprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stockcollection_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'stockcollectionprop_id',
- ],
- 'unique keys' => [
- 'stockcollectionprop_c1' => [
- 0 => 'stockcollection_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stockcollectionprop_idx1' => [
- 0 => 'stockcollection_id',
- ],
- 'stockcollectionprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stockcollection' => [
- 'table' => 'stockcollection',
- 'columns' => [
- 'stockcollection_id' => 'stockcollection_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stockprop()
- * Purpose: To describe the structure of 'stockprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stockprop() {
- $description = [
- 'table' => 'stockprop',
- 'fields' => [
- 'stockprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stock_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'stockprop_id',
- ],
- 'unique keys' => [
- 'stockprop_c1' => [
- 0 => 'stock_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'stockprop_idx1' => [
- 0 => 'stock_id',
- ],
- 'stockprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'stock' => [
- 'table' => 'stock',
- 'columns' => [
- 'stock_id' => 'stock_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_stockprop_pub()
- * Purpose: To describe the structure of 'stockprop_pub' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'stockprop_pub' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_stockprop_pub() {
- $description = [
- 'table' => 'stockprop_pub',
- 'fields' => [
- 'stockprop_pub_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'stockprop_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'stockprop_pub_id',
- ],
- 'unique keys' => [
- 'stockprop_pub_c1' => [
- 0 => 'stockprop_id',
- 1 => 'pub_id',
- ],
- ],
- 'indexes' => [
- 'stockprop_pub_idx1' => [
- 0 => 'stockprop_id',
- ],
- 'stockprop_pub_idx2' => [
- 0 => 'pub_id',
- ],
- ],
- 'foreign keys' => [
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'stockprop' => [
- 'table' => 'stockprop',
- 'columns' => [
- 'stockprop_id' => 'stockprop_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_study()
- * Purpose: To describe the structure of 'study' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'study' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_study() {
- $description = [
- 'table' => 'study',
- 'fields' => [
- 'study_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'contact_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'pub_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'dbxref_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'study_id',
- ],
- 'unique keys' => [
- 'study_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- 'study_idx1' => [
- 0 => 'contact_id',
- ],
- 'study_idx2' => [
- 0 => 'pub_id',
- ],
- 'study_idx3' => [
- 0 => 'dbxref_id',
- ],
- ],
- 'foreign keys' => [
- 'dbxref' => [
- 'table' => 'dbxref',
- 'columns' => [
- 'dbxref_id' => 'dbxref_id',
- ],
- ],
- 'pub' => [
- 'table' => 'pub',
- 'columns' => [
- 'pub_id' => 'pub_id',
- ],
- ],
- 'contact' => [
- 'table' => 'contact',
- 'columns' => [
- 'contact_id' => 'contact_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_study_assay()
- * Purpose: To describe the structure of 'study_assay' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'study_assay' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_study_assay() {
- $description = [
- 'table' => 'study_assay',
- 'fields' => [
- 'study_assay_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'study_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'study_assay_id',
- ],
- 'unique keys' => [
- 'study_assay_c1' => [
- 0 => 'study_id',
- 1 => 'assay_id',
- ],
- ],
- 'indexes' => [
- 'study_assay_idx1' => [
- 0 => 'study_id',
- ],
- 'study_assay_idx2' => [
- 0 => 'assay_id',
- ],
- ],
- 'foreign keys' => [
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- 'study' => [
- 'table' => 'study',
- 'columns' => [
- 'study_id' => 'study_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_studydesign()
- * Purpose: To describe the structure of 'studydesign' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studydesign' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_studydesign() {
- $description = [
- 'table' => 'studydesign',
- 'fields' => [
- 'studydesign_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'study_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'studydesign_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'studydesign_idx1' => [
- 0 => 'study_id',
- ],
- ],
- 'foreign keys' => [
- 'study' => [
- 'table' => 'study',
- 'columns' => [
- 'study_id' => 'study_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_studydesignprop()
- * Purpose: To describe the structure of 'studydesignprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studydesignprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_studydesignprop() {
- $description = [
- 'table' => 'studydesignprop',
- 'fields' => [
- 'studydesignprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'studydesign_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'studydesignprop_id',
- ],
- 'unique keys' => [
- 'studydesignprop_c1' => [
- 0 => 'studydesign_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'studydesignprop_idx1' => [
- 0 => 'studydesign_id',
- ],
- 'studydesignprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'studydesign' => [
- 'table' => 'studydesign',
- 'columns' => [
- 'studydesign_id' => 'studydesign_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_studyfactor()
- * Purpose: To describe the structure of 'studyfactor' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyfactor' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_studyfactor() {
- $description = [
- 'table' => 'studyfactor',
- 'fields' => [
- 'studyfactor_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'studydesign_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '1',
- ],
- 'description' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'studyfactor_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'studyfactor_idx1' => [
- 0 => 'studydesign_id',
- ],
- 'studyfactor_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'studydesign' => [
- 'table' => 'studydesign',
- 'columns' => [
- 'studydesign_id' => 'studydesign_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_studyfactorvalue()
- * Purpose: To describe the structure of 'studyfactorvalue' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyfactorvalue' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_studyfactorvalue() {
- $description = [
- 'table' => 'studyfactorvalue',
- 'fields' => [
- 'studyfactorvalue_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'studyfactor_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'assay_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'factorvalue' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'studyfactorvalue_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'studyfactorvalue_idx1' => [
- 0 => 'studyfactor_id',
- ],
- 'studyfactorvalue_idx2' => [
- 0 => 'assay_id',
- ],
- ],
- 'foreign keys' => [
- 'assay' => [
- 'table' => 'assay',
- 'columns' => [
- 'assay_id' => 'assay_id',
- ],
- ],
- 'studyfactor' => [
- 'table' => 'studyfactor',
- 'columns' => [
- 'studyfactor_id' => 'studyfactor_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_studyprop()
- * Purpose: To describe the structure of 'studyprop' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyprop' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_studyprop() {
- $description = [
- 'table' => 'studyprop',
- 'fields' => [
- 'studyprop_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'study_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'value' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- ],
- 'primary key' => [
- 0 => 'studyprop_id',
- ],
- 'unique keys' => [
- 'study_id' => [
- 0 => 'study_id',
- 1 => 'type_id',
- 2 => 'rank',
- ],
- ],
- 'indexes' => [
- 'studyprop_idx1' => [
- 0 => 'study_id',
- ],
- 'studyprop_idx2' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'study' => [
- 'table' => 'study',
- 'columns' => [
- 'study_id' => 'study_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_studyprop_feature()
- * Purpose: To describe the structure of 'studyprop_feature' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'studyprop_feature' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_studyprop_feature() {
- $description = [
- 'table' => 'studyprop_feature',
- 'fields' => [
- 'studyprop_feature_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'studyprop_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'feature_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'studyprop_feature_id',
- ],
- 'unique keys' => [
- 'studyprop_id' => [
- 0 => 'studyprop_id',
- 1 => 'feature_id',
- ],
- ],
- 'indexes' => [
- 'studyprop_feature_idx1' => [
- 0 => 'studyprop_id',
- ],
- 'studyprop_feature_idx2' => [
- 0 => 'feature_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'feature' => [
- 'table' => 'feature',
- 'columns' => [
- 'feature_id' => 'feature_id',
- ],
- ],
- 'studyprop' => [
- 'table' => 'studyprop',
- 'columns' => [
- 'studyprop_id' => 'studyprop_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_synonym()
- * Purpose: To describe the structure of 'synonym' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'synonym' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_synonym() {
- $description = [
- 'table' => 'synonym',
- 'fields' => [
- 'synonym_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'synonym_sgml' => [
- 'type' => 'varchar',
- 'length' => '255',
- 'not NULL' => '1',
- ],
- ],
- 'primary key' => [
- 0 => 'synonym_id',
- ],
- 'unique keys' => [
- 'synonym_c1' => [
- 0 => 'name',
- 1 => 'type_id',
- ],
- ],
- 'indexes' => [
- 'synonym_idx1' => [
- 0 => 'type_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_tableinfo()
- * Purpose: To describe the structure of 'tableinfo' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'tableinfo' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_tableinfo() {
- $description = [
- 'table' => 'tableinfo',
- 'fields' => [
- 'tableinfo_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'name' => [
- 'type' => 'varchar',
- 'length' => '30',
- 'not NULL' => '1',
- ],
- 'primary_key_column' => [
- 'type' => 'varchar',
- 'length' => '30',
- 'not NULL' => '',
- ],
- 'is_view' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- 'view_on_table_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'superclass_table_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'is_updateable' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '1',
- ],
- 'modification_date' => [
- 'type' => 'date',
- 'not NULL' => '1',
- 'default' => 'ow(',
- ],
- ],
- 'primary key' => [
- 0 => 'tableinfo_id',
- ],
- 'unique keys' => [
- 'tableinfo_c1' => [
- 0 => 'name',
- ],
- ],
- 'indexes' => [
- ],
- 'foreign keys' => [
- ],
- ];
- return $description;
- }
- /**
- * Implements hook_chado_schema_v1_11_treatment()
- * Purpose: To describe the structure of 'treatment' to tripal
- *
- * @see chado_insert_record()
- * @see chado_update_record()
- * @see chado_select_record()
- *
- * @return
- * An array describing the 'treatment' table
- *
- * @ingroup tripal_chado_v1.11_schema_api
- *
- */
- function tripal_chado_chado_schema_v1_11_treatment() {
- $description = [
- 'table' => 'treatment',
- 'fields' => [
- 'treatment_id' => [
- 'type' => 'serial',
- 'not NULL' => '1',
- ],
- 'rank' => [
- 'type' => 'int',
- 'not NULL' => '1',
- 'default' => '0',
- ],
- 'biomaterial_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'type_id' => [
- 'type' => 'int',
- 'not NULL' => '1',
- ],
- 'protocol_id' => [
- 'type' => 'int',
- 'not NULL' => '',
- ],
- 'name' => [
- 'type' => 'text',
- 'not NULL' => '',
- ],
- ],
- 'primary key' => [
- 0 => 'treatment_id',
- ],
- 'unique keys' => [
- ],
- 'indexes' => [
- 'treatment_idx1' => [
- 0 => 'biomaterial_id',
- ],
- 'treatment_idx2' => [
- 0 => 'type_id',
- ],
- 'treatment_idx3' => [
- 0 => 'protocol_id',
- ],
- ],
- 'foreign keys' => [
- 'cvterm' => [
- 'table' => 'cvterm',
- 'columns' => [
- 'type_id' => 'cvterm_id',
- ],
- ],
- 'protocol' => [
- 'table' => 'protocol',
- 'columns' => [
- 'protocol_id' => 'protocol_id',
- ],
- ],
- 'biomaterial' => [
- 'table' => 'biomaterial',
- 'columns' => [
- 'biomaterial_id' => 'biomaterial_id',
- ],
- ],
- ],
- ];
- return $description;
- }
- /**
- * Lists the table names in the v1.11 chado schema
- *
- * @return
- * An array containing all of the table names
- *
- * @ingroup tripal_chado_v1.2_schema_api
- *
- */
- function tripal_chado_chado_get_v1_11_tables() {
- $tables = [
- 'acquisition',
- 'acquisition_relationship',
- 'acquisitionprop',
- 'analysis',
- 'analysisfeature',
- 'analysisfeatureprop',
- 'analysisprop',
- 'arraydesign',
- 'arraydesignprop',
- 'assay',
- 'assay_biomaterial',
- 'assay_project',
- 'assayprop',
- 'biomaterial',
- 'biomaterial_dbxref',
- 'biomaterial_relationship',
- 'biomaterial_treatment',
- 'biomaterialprop',
- 'cell_line',
- 'cell_line_cvterm',
- 'cell_line_cvtermprop',
- 'cell_line_dbxref',
- 'cell_line_feature',
- 'cell_line_library',
- 'cell_line_pub',
- 'cell_line_relationship',
- 'cell_line_synonym',
- 'cell_lineprop',
- 'cell_lineprop_pub',
- 'channel',
- 'contact',
- 'contact_relationship',
- 'control',
- 'cv',
- 'cvterm',
- 'cvterm_dbxref',
- 'cvterm_relationship',
- 'cvtermpath',
- 'cvtermprop',
- 'cvtermsynonym',
- 'db',
- 'dbxref',
- 'dbxrefprop',
- 'eimage',
- 'element',
- 'element_relationship',
- 'elementresult',
- 'elementresult_relationship',
- 'environment',
- 'environment_cvterm',
- 'expression',
- 'expression_cvterm',
- 'expression_cvtermprop',
- 'expression_image',
- 'expression_pub',
- 'expressionprop',
- 'feature',
- 'feature_cvterm',
- 'feature_cvterm_dbxref',
- 'feature_cvterm_pub',
- 'feature_cvtermprop',
- 'feature_dbxref',
- 'feature_expression',
- 'feature_expressionprop',
- 'feature_genotype',
- 'feature_phenotype',
- 'feature_pub',
- 'feature_pubprop',
- 'feature_relationship',
- 'feature_relationship_pub',
- 'feature_relationshipprop',
- 'feature_relationshipprop_pub',
- 'feature_synonym',
- 'featureloc',
- 'featureloc_pub',
- 'featuremap',
- 'featuremap_pub',
- 'featurepos',
- 'featureprop',
- 'featureprop_pub',
- 'featurerange',
- 'genotype',
- 'library',
- 'library_cvterm',
- 'library_dbxref',
- 'library_feature',
- 'library_pub',
- 'library_synonym',
- 'libraryprop',
- 'libraryprop_pub',
- 'magedocumentation',
- 'mageml',
- 'materialized_view',
- 'organism',
- 'organism_dbxref',
- 'organismprop',
- 'phendesc',
- 'phenotype',
- 'phenotype_comparison',
- 'phenotype_comparison_cvterm',
- 'phenotype_cvterm',
- 'phenstatement',
- 'phylonode',
- 'phylonode_dbxref',
- 'phylonode_organism',
- 'phylonode_pub',
- 'phylonode_relationship',
- 'phylonodeprop',
- 'phylotree',
- 'phylotree_pub',
- 'project',
- 'protocol',
- 'protocolparam',
- 'pub',
- 'pub_dbxref',
- 'pub_relationship',
- 'pubauthor',
- 'pubprop',
- 'quantification',
- 'quantification_relationship',
- 'quantificationprop',
- 'stock',
- 'stock_cvterm',
- 'stock_dbxref',
- 'stock_genotype',
- 'stock_pub',
- 'stock_relationship',
- 'stock_relationship_pub',
- 'stockcollection',
- 'stockcollection_stock',
- 'stockcollectionprop',
- 'stockprop',
- 'stockprop_pub',
- 'study',
- 'study_assay',
- 'studydesign',
- 'studydesignprop',
- 'studyfactor',
- 'studyfactorvalue',
- 'studyprop',
- 'studyprop_feature',
- 'synonym',
- 'tableinfo',
- 'treatment',
- ];
- return $tables;
- }
|